Wall clock time and date at job start Tue Mar 31 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58821 * 2 1 4 4 C 1.53190 * 109.70508 * 120.35433 * 2 1 3 5 5 H 1.09005 * 109.49005 * 54.54402 * 4 2 1 6 6 N 1.46497 * 109.50400 * 294.47998 * 4 2 1 7 7 C 1.34767 * 120.00298 * 154.99394 * 6 4 2 8 8 O 1.21735 * 120.00162 * 0.02562 * 7 6 4 9 9 C 1.46411 * 119.99821 * 179.97438 * 7 6 4 10 10 C 1.35783 * 124.96077 * 179.72376 * 9 7 6 11 11 C 1.38867 * 115.19061 * 179.82821 * 10 9 7 12 12 N 1.39743 * 139.91634 * 180.08963 * 11 10 9 13 13 H 0.96996 * 125.63296 * 0.37160 * 12 11 10 14 14 C 1.36218 * 108.73478 * 180.34616 * 12 11 10 15 15 C 1.34513 * 109.29548 * 0.02562 * 14 12 11 16 16 C 1.38245 * 113.39078 * 0.45458 * 11 10 9 17 17 S 1.75623 * 124.96292 * 0.02700 * 9 7 6 18 18 C 1.53040 * 109.31492 * 174.49064 * 4 2 1 19 19 C 1.53038 * 109.53828 * 298.64023 * 18 4 2 20 20 C 1.52766 * 109.38434 * 61.23830 * 19 18 4 21 21 N 1.46922 * 109.58706 * 239.72026 * 2 1 3 22 22 C 1.36928 * 120.63248 * 6.43715 * 21 2 1 23 23 H 1.07999 * 120.00328 * 332.61721 * 22 21 2 24 24 C 1.38816 * 120.00401 * 152.61207 * 22 21 2 25 25 N 1.31615 * 119.99805 * 334.23142 * 24 22 21 26 26 Si 1.86802 * 120.00136 * 154.22361 * 24 22 21 27 27 H 1.48496 * 109.47168 * 180.02562 * 26 24 22 28 28 H 1.48498 * 109.47440 * 300.00692 * 26 24 22 29 29 H 1.48502 * 109.46594 * 60.00613 * 26 24 22 30 30 H 1.08994 * 109.47202 * 180.28067 * 1 2 3 31 31 H 1.09003 * 109.47062 * 300.28169 * 1 2 3 32 32 H 1.09000 * 109.47146 * 60.27907 * 1 2 3 33 33 H 0.97006 * 119.99219 * 334.99942 * 6 4 2 34 34 H 1.08006 * 122.40372 * 359.97438 * 10 9 7 35 35 H 1.07995 * 125.35102 * 179.97438 * 14 12 11 36 36 H 1.07999 * 126.07372 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.45827 * 58.66095 * 18 4 2 38 38 H 1.09000 * 109.46323 * 178.63644 * 18 4 2 39 39 H 1.09000 * 109.49787 * 181.31657 * 19 18 4 40 40 H 1.09000 * 109.50018 * 301.37948 * 19 18 4 41 41 H 1.08998 * 109.50941 * 185.70314 * 20 19 18 42 42 H 1.08997 * 109.42694 * 65.42523 * 20 19 18 43 43 H 0.96996 * 120.00069 * 354.52419 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.6079 -1.7257 1.2904 6 7 1.6727 0.0255 2.4434 7 6 1.5520 -0.6072 3.6272 8 8 1.7540 -1.8054 3.7004 9 6 1.1790 0.1469 4.8255 10 6 1.0241 -0.3874 6.0642 11 6 0.6699 0.5161 7.0575 12 7 0.3931 0.5453 8.4270 13 1 0.4129 -0.2190 9.0239 14 6 0.0915 1.8245 8.7852 15 6 0.1627 2.6181 7.7014 16 6 0.5278 1.8114 6.5960 17 16 0.8591 1.8732 4.8693 18 6 3.5706 -0.8443 1.1674 19 6 3.9602 -1.6607 -0.0671 20 6 3.4647 -0.9473 -1.3238 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1132 -2.1685 23 1 0.1294 -1.3449 -1.9151 24 6 1.5882 -1.2363 -3.4811 25 7 2.6044 -0.5169 -3.9078 26 14 0.7313 -2.4231 -4.6415 27 1 1.3819 -2.3678 -5.9753 28 1 0.8293 -3.8024 -4.1002 29 1 -0.6983 -2.0427 -4.7715 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.5120 0.9804 2.3851 34 1 1.1685 -1.4391 6.2631 35 1 -0.1653 2.1501 9.7823 36 1 -0.0242 3.6815 7.6786 37 1 4.0071 0.1519 1.0965 38 1 3.9430 -1.3411 2.0633 39 1 5.0446 -1.7624 -0.1086 40 1 3.5041 -2.6490 -0.0085 41 1 3.6510 -1.5744 -2.1957 42 1 3.9912 0.0007 -1.4338 43 1 2.9986 0.1558 -3.3309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994299629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:11 Heat of formation + Delta-G solvation = 53.151517 kcal Electronic energy + Delta-G solvation = -26031.448217 eV Core-core repulsion = 22397.363656 eV Total energy + Delta-G solvation = -3634.084562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45883 -39.79627 -37.83973 -35.26216 -34.46940 -32.70516 -31.79695 -31.21800 -29.47858 -28.14782 -26.28915 -24.98327 -24.11369 -22.31489 -21.46036 -20.94003 -20.81160 -20.00613 -19.12640 -18.63704 -17.08097 -16.76179 -15.91412 -15.68521 -15.20197 -14.72819 -14.59613 -14.57024 -14.19173 -13.79013 -13.72896 -13.61767 -13.38569 -13.21223 -13.00722 -12.54698 -12.20435 -11.92091 -11.69344 -11.32781 -11.24209 -11.12580 -11.05545 -10.72818 -10.39359 -10.31400 -10.15391 -10.02250 -9.98063 -9.95052 -9.79052 -9.19110 -8.81049 -8.38279 -8.31675 -7.90273 -6.89481 -6.05038 -3.20742 0.36594 1.23645 1.77944 2.17541 2.36729 2.66870 3.27672 3.31233 3.51637 3.55918 3.73006 4.55987 4.59376 4.62725 4.74592 5.04307 5.17748 5.18953 5.31489 5.44573 5.50829 5.56743 5.66033 5.69632 5.77049 5.85679 5.97776 6.12692 6.20079 6.27138 6.35784 6.41978 6.43599 6.49466 6.59863 6.62677 6.70310 6.90979 6.98926 7.07447 7.13879 7.22738 7.62718 8.03634 8.28925 8.59212 9.11430 9.86324 10.28915 11.23532 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.002573 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.714923 B =10881.291846 C =11111.641028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 H 0.026 0.974 4 C 0.132 3.868 5 H 0.090 0.910 6 N -0.711 5.711 7 C 0.589 3.411 8 O -0.532 6.532 9 C -0.229 4.229 10 C -0.036 4.036 11 C 0.025 3.975 12 N -0.557 5.557 13 H 0.420 0.580 14 C 0.056 3.944 15 C -0.171 4.171 16 C -0.189 4.189 17 S 0.165 5.835 18 C -0.118 4.118 19 C -0.134 4.134 20 C 0.148 3.852 21 N -0.588 5.588 22 C -0.349 4.349 23 H 0.063 0.937 24 C -0.022 4.022 25 N -0.915 5.915 26 Si 1.062 2.938 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.394 0.606 34 H 0.149 0.851 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.017 0.983 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 6.167 24.954 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.062 3.938 3 H 0.044 0.956 4 C 0.027 3.973 5 H 0.108 0.892 6 N -0.361 5.361 7 C 0.374 3.626 8 O -0.410 6.410 9 C -0.350 4.350 10 C -0.072 4.072 11 C -0.089 4.089 12 N -0.159 5.159 13 H 0.257 0.743 14 C -0.078 4.078 15 C -0.201 4.201 16 C -0.311 4.311 17 S 0.428 5.572 18 C -0.157 4.157 19 C -0.174 4.174 20 C 0.022 3.978 21 N -0.313 5.313 22 C -0.478 4.478 23 H 0.080 0.920 24 C -0.225 4.225 25 N -0.555 5.555 26 Si 0.892 3.108 27 H -0.212 1.212 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.228 0.772 34 H 0.167 0.833 35 H 0.195 0.805 36 H 0.165 0.835 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.228 5.659 22.356 23.286 hybrid contribution -0.136 -0.261 3.111 3.125 sum -3.364 5.398 25.467 26.249 Atomic orbital electron populations 1.21802 0.95333 1.01837 1.00273 1.20539 0.93580 0.93301 0.86407 0.95631 1.21828 0.95145 0.96994 0.83372 0.89222 1.45982 1.69860 1.11997 1.08217 1.16822 0.77333 0.86571 0.81871 1.90836 1.50984 1.13919 1.85310 1.23863 1.15478 0.97933 0.97689 1.19232 0.98990 1.00029 0.88925 1.17999 1.11405 0.94409 0.85092 1.41902 1.57951 1.09653 1.06348 0.74293 1.21867 1.03435 0.82606 0.99878 1.20139 1.11011 0.99487 0.89466 1.23206 1.12097 0.97395 0.98426 1.83792 1.70310 1.02948 1.00158 1.21775 0.95336 1.00141 0.98427 1.21986 0.99399 0.99817 0.96182 1.20932 0.84103 0.96921 0.95819 1.44103 1.02678 1.65543 1.18950 1.19950 0.95317 1.43983 0.88535 0.91958 1.25800 1.00095 1.01189 0.95376 1.70774 1.26476 1.20274 1.37938 0.83570 0.75050 0.76071 0.76147 1.21169 1.22060 1.22009 0.92540 0.94266 0.91679 0.77179 0.83348 0.80516 0.83519 0.92632 0.92776 0.92681 0.92112 0.90042 0.96463 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 7.82 37.16 0.29 -2.30 16 2 C 0.17 3.45 3.03 -67.60 -0.20 3.25 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.13 2.45 2.00 -67.81 -0.14 2.31 16 5 H 0.09 1.91 7.58 -51.93 -0.39 1.51 16 6 N -0.71 -11.13 4.58 -55.08 -0.25 -11.38 16 7 C 0.59 9.58 7.74 -12.98 -0.10 9.48 16 8 O -0.53 -10.39 16.43 5.16 0.08 -10.31 16 9 C -0.23 -3.09 6.38 -37.17 -0.24 -3.33 16 10 C -0.04 -0.44 9.88 -40.23 -0.40 -0.84 16 11 C 0.02 0.26 7.67 -84.02 -0.64 -0.38 16 12 N -0.56 -3.97 6.21 -10.90 -0.07 -4.04 16 13 H 0.42 1.69 8.96 -40.82 -0.37 1.33 16 14 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 15 C -0.17 -1.43 10.85 -39.60 -0.43 -1.86 16 16 C -0.19 -2.07 7.31 -38.28 -0.28 -2.35 16 17 S 0.17 1.85 22.29 -107.50 -2.40 -0.54 16 18 C -0.12 -2.14 5.46 -26.69 -0.15 -2.29 16 19 C -0.13 -2.63 6.06 -26.83 -0.16 -2.79 16 20 C 0.15 3.43 4.68 -3.93 -0.02 3.41 16 21 N -0.59 -14.32 2.86 -165.04 -0.47 -14.79 16 22 C -0.35 -9.42 8.53 -15.06 -0.13 -9.54 16 23 H 0.06 1.68 6.23 -52.49 -0.33 1.35 16 24 C -0.02 -0.62 4.66 -17.43 -0.08 -0.71 16 25 N -0.91 -26.95 12.43 55.49 0.69 -26.26 16 26 Si 1.06 25.13 29.99 -169.99 -5.10 20.03 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 30 H 0.06 1.15 7.45 -51.93 -0.39 0.76 16 31 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 32 H 0.06 1.33 7.61 -51.93 -0.39 0.94 16 33 H 0.39 5.34 7.66 -40.82 -0.31 5.03 16 34 H 0.15 1.72 8.00 -52.48 -0.42 1.30 16 35 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 36 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 2.12 6.32 -51.93 -0.33 1.79 16 42 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 43 H 0.27 7.97 6.77 -40.82 -0.28 7.69 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -33.12 359.14 -10.75 -43.87 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.78 Total: 5.80 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.88 Total: -7.79 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.10 Total: -56.48 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.10 Total: 20.03 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.40 Total: -0.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.12 -10.75 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.024 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds