Wall clock time and date at job start Tue Mar 31 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58821 * 2 1 4 4 C 1.53190 * 109.70508 * 120.35433 * 2 1 3 5 5 H 1.09005 * 109.49005 * 54.54402 * 4 2 1 6 6 N 1.46497 * 109.50400 * 294.47998 * 4 2 1 7 7 C 1.34767 * 120.00298 * 154.99394 * 6 4 2 8 8 O 1.21735 * 120.00162 * 0.02562 * 7 6 4 9 9 C 1.46411 * 119.99821 * 179.97438 * 7 6 4 10 10 C 1.35783 * 124.96077 * 179.72376 * 9 7 6 11 11 C 1.38867 * 115.19061 * 179.82821 * 10 9 7 12 12 N 1.39743 * 139.91634 * 180.08963 * 11 10 9 13 13 H 0.96996 * 125.63296 * 0.37160 * 12 11 10 14 14 C 1.36218 * 108.73478 * 180.34616 * 12 11 10 15 15 C 1.34513 * 109.29548 * 0.02562 * 14 12 11 16 16 C 1.38245 * 113.39078 * 0.45458 * 11 10 9 17 17 S 1.75623 * 124.96292 * 0.02700 * 9 7 6 18 18 C 1.53040 * 109.31492 * 174.49064 * 4 2 1 19 19 C 1.53038 * 109.53828 * 298.64023 * 18 4 2 20 20 C 1.52766 * 109.38434 * 61.23830 * 19 18 4 21 21 N 1.46922 * 109.58706 * 239.72026 * 2 1 3 22 22 C 1.36928 * 120.63248 * 6.43715 * 21 2 1 23 23 H 1.07999 * 120.00328 * 332.61721 * 22 21 2 24 24 C 1.38816 * 120.00401 * 152.61207 * 22 21 2 25 25 N 1.31615 * 119.99805 * 334.23142 * 24 22 21 26 26 Si 1.86802 * 120.00136 * 154.22361 * 24 22 21 27 27 H 1.48496 * 109.47168 * 180.02562 * 26 24 22 28 28 H 1.48498 * 109.47440 * 300.00692 * 26 24 22 29 29 H 1.48502 * 109.46594 * 60.00613 * 26 24 22 30 30 H 1.08994 * 109.47202 * 180.28067 * 1 2 3 31 31 H 1.09003 * 109.47062 * 300.28169 * 1 2 3 32 32 H 1.09000 * 109.47146 * 60.27907 * 1 2 3 33 33 H 0.97006 * 119.99219 * 334.99942 * 6 4 2 34 34 H 1.08006 * 122.40372 * 359.97438 * 10 9 7 35 35 H 1.07995 * 125.35102 * 179.97438 * 14 12 11 36 36 H 1.07999 * 126.07372 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.45827 * 58.66095 * 18 4 2 38 38 H 1.09000 * 109.46323 * 178.63644 * 18 4 2 39 39 H 1.09000 * 109.49787 * 181.31657 * 19 18 4 40 40 H 1.09000 * 109.50018 * 301.37948 * 19 18 4 41 41 H 1.08998 * 109.50941 * 185.70314 * 20 19 18 42 42 H 1.08997 * 109.42694 * 65.42523 * 20 19 18 43 43 H 0.96996 * 120.00069 * 354.52419 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7288 1.2445 5 1 1.6079 -1.7257 1.2904 6 7 1.6727 0.0255 2.4434 7 6 1.5520 -0.6072 3.6272 8 8 1.7540 -1.8054 3.7004 9 6 1.1790 0.1469 4.8255 10 6 1.0241 -0.3874 6.0642 11 6 0.6699 0.5161 7.0575 12 7 0.3931 0.5453 8.4270 13 1 0.4129 -0.2190 9.0239 14 6 0.0915 1.8245 8.7852 15 6 0.1627 2.6181 7.7014 16 6 0.5278 1.8114 6.5960 17 16 0.8591 1.8732 4.8693 18 6 3.5706 -0.8443 1.1674 19 6 3.9602 -1.6607 -0.0671 20 6 3.4647 -0.9473 -1.3238 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1132 -2.1685 23 1 0.1294 -1.3449 -1.9151 24 6 1.5882 -1.2363 -3.4811 25 7 2.6044 -0.5169 -3.9078 26 14 0.7313 -2.4231 -4.6415 27 1 1.3819 -2.3678 -5.9753 28 1 0.8293 -3.8024 -4.1002 29 1 -0.6983 -2.0427 -4.7715 30 1 -0.3633 -1.0276 0.0050 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.5120 0.9804 2.3851 34 1 1.1685 -1.4391 6.2631 35 1 -0.1653 2.1501 9.7823 36 1 -0.0242 3.6815 7.6786 37 1 4.0071 0.1519 1.0965 38 1 3.9430 -1.3411 2.0633 39 1 5.0446 -1.7624 -0.1086 40 1 3.5041 -2.6490 -0.0085 41 1 3.6510 -1.5744 -2.1957 42 1 3.9912 0.0007 -1.4338 43 1 2.9986 0.1558 -3.3309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994299629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:10 Heat of formation + Delta-G solvation = 31.994664 kcal Electronic energy + Delta-G solvation = -26032.365647 eV Core-core repulsion = 22397.363656 eV Total energy + Delta-G solvation = -3635.001992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13577 -41.17372 -39.44346 -36.32731 -35.92774 -34.40930 -33.53919 -31.87216 -31.10508 -29.20326 -27.88888 -26.81825 -25.24761 -23.64020 -22.64476 -22.45664 -21.65183 -21.36613 -20.58433 -19.45992 -18.90822 -17.90180 -17.34432 -16.52874 -16.45929 -16.28825 -15.96119 -15.58865 -15.47548 -15.44496 -15.05363 -14.98531 -14.87104 -14.38917 -14.27326 -13.68195 -13.54007 -13.06631 -13.00253 -12.97315 -12.79724 -12.58218 -12.53160 -12.08163 -11.98556 -11.93923 -11.91923 -11.82336 -11.72356 -11.29249 -11.04802 -10.68251 -10.46781 -10.17398 -9.15391 -8.91827 -8.63729 -8.20509 -5.34114 -0.52950 0.40362 0.94012 1.36158 1.59371 1.66689 1.72050 1.84066 1.85951 2.12527 2.25744 2.68278 3.23515 3.46047 3.66138 3.80234 3.91537 3.95316 4.06271 4.15752 4.20799 4.22072 4.35618 4.49104 4.55090 4.62507 4.69661 4.76039 4.80702 4.91500 4.96390 5.00134 5.04064 5.07831 5.13984 5.26079 5.29839 5.33974 5.51739 5.55106 5.78473 5.92992 6.37168 6.44491 6.60258 7.02155 7.08922 7.81139 8.24221 9.05789 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027669 B = 0.002573 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.714923 B =10881.291846 C =11111.641028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.166 3.834 3 H 0.034 0.966 4 C 0.148 3.852 5 H 0.061 0.939 6 N -0.703 5.703 7 C 0.592 3.408 8 O -0.573 6.573 9 C -0.268 4.268 10 C -0.023 4.023 11 C -0.006 4.006 12 N -0.546 5.546 13 H 0.435 0.565 14 C 0.092 3.908 15 C -0.199 4.199 16 C -0.196 4.196 17 S 0.175 5.825 18 C -0.111 4.111 19 C -0.124 4.124 20 C 0.153 3.847 21 N -0.606 5.606 22 C -0.347 4.347 23 H 0.059 0.941 24 C -0.074 4.074 25 N -0.942 5.942 26 Si 1.108 2.892 27 H -0.293 1.293 28 H -0.285 1.285 29 H -0.276 1.276 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.406 0.594 34 H 0.147 0.853 35 H 0.227 0.773 36 H 0.165 0.835 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.013 0.987 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 7.344 28.422 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.060 3.940 3 H 0.051 0.949 4 C 0.042 3.958 5 H 0.079 0.921 6 N -0.353 5.353 7 C 0.380 3.620 8 O -0.455 6.455 9 C -0.388 4.388 10 C -0.059 4.059 11 C -0.119 4.119 12 N -0.148 5.148 13 H 0.275 0.725 14 C -0.044 4.044 15 C -0.229 4.229 16 C -0.319 4.319 17 S 0.438 5.562 18 C -0.149 4.149 19 C -0.163 4.163 20 C 0.028 3.972 21 N -0.331 5.331 22 C -0.476 4.476 23 H 0.077 0.923 24 C -0.270 4.270 25 N -0.584 5.584 26 Si 0.934 3.066 27 H -0.219 1.219 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.242 0.758 34 H 0.164 0.836 35 H 0.244 0.756 36 H 0.183 0.817 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.205 6.845 25.862 27.081 hybrid contribution 0.101 -0.526 2.311 2.372 sum -4.105 6.319 28.173 29.163 Atomic orbital electron populations 1.21706 0.94477 1.01063 1.01085 1.20687 0.94354 0.93359 0.85641 0.94854 1.21358 0.95241 0.95561 0.83677 0.92055 1.45751 1.69891 1.12361 1.07329 1.17136 0.76217 0.86183 0.82466 1.90803 1.52963 1.15737 1.85998 1.23482 1.19126 0.99300 0.96884 1.19340 0.97212 1.00242 0.89127 1.17928 1.13357 0.93966 0.86655 1.42048 1.56699 1.10938 1.05159 0.72460 1.22711 0.99118 0.81310 1.01222 1.20572 1.12350 1.00777 0.89153 1.23626 1.11434 0.98268 0.98528 1.83586 1.70496 1.01002 1.01150 1.21706 0.94963 1.00591 0.97675 1.21851 1.00707 0.98740 0.95041 1.20797 0.83860 0.96343 0.96214 1.44323 1.02888 1.66338 1.19589 1.20155 0.95590 1.42753 0.89118 0.92300 1.27002 1.00537 1.02254 0.97250 1.70882 1.28129 1.21428 1.37986 0.82934 0.74975 0.74651 0.74090 1.21900 1.21163 1.20161 0.94079 0.90973 0.93226 0.75763 0.83572 0.75624 0.81735 0.91281 0.92234 0.90225 0.93466 0.93354 0.96951 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 7.82 71.98 0.56 -4.27 16 2 C 0.17 6.81 3.03 44.97 0.14 6.95 16 3 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 4 C 0.15 5.51 2.00 45.07 0.09 5.60 16 5 H 0.06 2.67 7.58 -2.38 -0.02 2.66 16 6 N -0.70 -21.83 4.58 -446.38 -2.05 -23.88 16 7 C 0.59 19.42 7.74 86.37 0.67 20.09 16 8 O -0.57 -22.96 16.43 -4.46 -0.07 -23.03 16 9 C -0.27 -7.17 6.38 23.83 0.15 -7.02 16 10 C -0.02 -0.54 9.88 21.85 0.22 -0.33 16 11 C -0.01 -0.12 7.67 38.03 0.29 0.17 16 12 N -0.55 -5.82 6.21 -188.39 -1.17 -6.99 16 13 H 0.43 1.92 8.96 -92.71 -0.83 1.09 16 14 C 0.09 0.67 11.85 83.16 0.99 1.65 16 15 C -0.20 -2.59 10.85 22.25 0.24 -2.35 16 16 C -0.20 -3.86 7.31 23.11 0.17 -3.69 16 17 S 0.17 3.73 22.29 -56.49 -1.26 2.47 16 18 C -0.11 -3.96 5.46 30.62 0.17 -3.80 16 19 C -0.12 -4.87 6.06 30.53 0.19 -4.69 16 20 C 0.15 7.30 4.68 86.22 0.40 7.71 16 21 N -0.61 -30.19 2.86 -676.07 -1.93 -32.12 16 22 C -0.35 -19.11 8.53 84.04 0.72 -18.39 16 23 H 0.06 3.24 6.23 -2.91 -0.02 3.22 16 24 C -0.07 -4.19 4.66 84.86 0.40 -3.80 16 25 N -0.94 -57.14 12.43 21.65 0.27 -56.87 16 26 Si 1.11 51.58 29.99 68.60 2.06 53.64 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 29 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.04 1.68 7.45 -2.39 -0.02 1.66 16 31 H 0.07 2.25 7.81 -2.39 -0.02 2.23 16 32 H 0.05 2.04 7.61 -2.39 -0.02 2.02 16 33 H 0.41 10.67 7.66 -92.70 -0.71 9.96 16 34 H 0.15 3.40 8.00 -2.91 -0.02 3.38 16 35 H 0.23 -0.63 8.06 -2.91 -0.02 -0.66 16 36 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 2.61 6.32 -2.39 -0.02 2.59 16 42 H 0.01 0.60 7.88 -2.39 -0.02 0.58 16 43 H 0.26 15.71 6.77 -92.71 -0.63 15.08 16 Total: -1.00 -74.67 359.14 0.89 -73.78 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.34 Total: 19.15 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.38 Total: -6.15 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -4.88 Total: -119.86 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.07 Total: -23.03 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.06 Total: 53.64 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.26 Total: 2.47 kcal Total: -74.67 0.89 -73.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.777 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds