Wall clock time and date at job start Tue Mar 31 2020 19:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46491 * 109.47079 * 2 1 4 4 C 1.34774 * 120.00472 * 82.48818 * 3 2 1 5 5 O 1.21722 * 120.00759 * 183.78493 * 4 3 2 6 6 C 1.46503 * 119.99623 * 3.78446 * 4 3 2 7 7 C 1.36109 * 125.71093 * 168.57906 * 6 4 3 8 8 C 1.42227 * 107.62756 * 179.97438 * 7 6 4 9 9 C 1.45588 * 140.78161 * 180.02562 * 8 7 6 10 10 C 1.31811 * 114.63442 * 180.02562 * 9 8 7 11 11 S 1.75357 * 111.24492 * 0.21207 * 10 9 8 12 12 C 1.38177 * 106.99139 * 0.02562 * 8 7 6 13 13 N 1.37458 * 108.16854 * 359.97438 * 12 8 7 14 14 H 0.97006 * 125.68321 * 180.02562 * 13 12 8 15 15 C 1.46510 * 120.00237 * 262.49068 * 3 2 1 16 16 H 1.09004 * 110.88237 * 9.64787 * 15 3 2 17 17 C 1.55156 * 111.00028 * 245.77409 * 15 3 2 18 18 C 1.54319 * 102.94360 * 277.42115 * 17 15 3 19 19 N 1.47017 * 107.27157 * 337.81316 * 18 17 15 20 20 C 1.36937 * 125.64845 * 178.98692 * 19 18 17 21 21 H 1.08003 * 120.00043 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00073 * 359.97198 * 20 19 18 23 23 N 1.31615 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00128 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46949 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47420 * 119.99643 * 24 22 20 27 27 H 1.48500 * 109.47131 * 239.99878 * 24 22 20 28 28 C 1.47429 * 108.70641 * 358.93532 * 19 18 17 29 29 H 1.08993 * 109.47308 * 300.00441 * 1 2 3 30 30 H 1.09005 * 109.46580 * 60.00051 * 1 2 3 31 31 H 1.08994 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46762 * 239.99605 * 2 1 3 33 33 H 1.08996 * 109.46683 * 120.00079 * 2 1 3 34 34 H 1.07998 * 126.18820 * 359.96995 * 7 6 4 35 35 H 1.07998 * 122.68366 * 359.97438 * 9 8 7 36 36 H 1.07999 * 124.38205 * 180.02562 * 10 9 8 37 37 H 1.08998 * 110.72106 * 35.79402 * 17 15 3 38 38 H 1.09001 * 110.71594 * 159.05880 * 17 15 3 39 39 H 1.09003 * 109.87914 * 97.22676 * 18 17 15 40 40 H 1.08994 * 109.88366 * 218.23734 * 18 17 15 41 41 H 0.97003 * 120.00428 * 179.97438 * 23 22 20 42 42 H 1.08994 * 110.36848 * 265.29414 * 28 19 18 43 43 H 1.08999 * 110.36892 * 142.96700 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0992 2.0674 1.1571 5 8 2.4391 3.2362 1.1492 6 6 1.7779 1.4066 2.4246 7 6 2.0250 1.9066 3.6661 8 6 1.5596 0.9542 4.6144 9 6 1.4612 0.7497 6.0525 10 6 0.9038 -0.3904 6.4085 11 16 0.4451 -1.3385 5.0064 12 6 1.0390 -0.1070 3.8988 13 7 1.1734 0.1722 2.5595 14 1 0.8906 -0.4022 1.8307 15 6 2.4189 2.0166 -1.2579 16 1 2.1376 1.3999 -2.1115 17 6 3.9406 2.3194 -1.2680 18 6 4.0326 3.6535 -0.4978 19 7 2.7123 4.2953 -0.5771 20 6 2.3703 5.4907 -0.0034 21 1 1.3693 5.8791 -0.1206 22 6 3.3099 6.2033 0.7287 23 7 4.5295 5.7297 0.8720 24 14 2.8431 7.8337 1.5119 25 1 1.4232 8.1417 1.2051 26 1 3.0243 7.7461 2.9832 27 1 3.7109 8.9098 0.9695 28 6 1.8178 3.4392 -1.3774 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4903 2.8550 3.8907 35 1 1.8173 1.4739 6.7702 36 1 0.7521 -0.7020 7.4314 37 1 4.4932 1.5359 -0.7497 38 1 4.3034 2.4378 -2.2890 39 1 4.2903 3.4630 0.5440 40 1 4.7868 4.2942 -0.9549 41 1 5.1863 6.2278 1.3833 42 1 1.8138 3.7631 -2.4181 43 1 0.8074 3.4597 -0.9690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033914379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:03 Heat of formation + Delta-G solvation = 148.892569 kcal Electronic energy + Delta-G solvation = -27809.057395 eV Core-core repulsion = 24179.124476 eV Total energy + Delta-G solvation = -3629.932918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.37239 -39.41813 -36.21407 -35.92057 -34.78625 -32.29209 -30.67614 -29.70923 -28.89235 -28.35364 -27.00174 -24.42323 -23.66457 -22.89220 -22.49140 -20.33204 -19.84115 -19.58882 -19.19592 -17.66949 -16.69086 -16.39574 -15.67255 -15.31563 -15.05425 -14.61620 -14.38073 -14.22493 -13.98876 -13.74228 -13.56199 -13.30646 -12.86838 -12.61634 -12.44531 -11.99146 -11.96767 -11.75791 -11.73844 -11.66917 -11.56759 -11.16932 -10.82228 -10.72076 -10.69076 -10.68039 -10.02696 -9.91177 -9.68947 -9.40075 -9.28039 -8.82837 -8.43427 -8.14145 -7.88390 -7.51692 -6.24533 -5.38513 -2.63803 1.14690 1.40793 1.78458 1.99962 3.12453 3.21753 3.43424 3.56585 3.61860 3.63784 3.99578 4.58312 4.70278 4.75329 4.89934 4.95114 5.08406 5.19113 5.41791 5.42918 5.50772 5.53804 5.56059 5.70163 5.76925 5.90423 5.92366 5.99105 6.03478 6.20620 6.23165 6.39894 6.50179 6.57568 6.63119 6.67525 6.76247 6.95542 7.19720 7.34531 7.79940 7.90712 7.91604 8.13824 8.57361 9.04226 9.53568 10.15597 10.81042 11.74789 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.004598 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.682841 B = 6087.600733 C = 7661.721850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.090 3.910 3 N -0.611 5.611 4 C 0.524 3.476 5 O -0.374 6.374 6 C 0.016 3.984 7 C -0.083 4.083 8 C -0.161 4.161 9 C -0.064 4.064 10 C -0.228 4.228 11 S 0.108 5.892 12 C -0.029 4.029 13 N -0.537 5.537 14 H 0.424 0.576 15 C 0.134 3.866 16 H 0.083 0.917 17 C -0.161 4.161 18 C 0.190 3.810 19 N -0.567 5.567 20 C -0.192 4.192 21 H 0.067 0.933 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.899 3.101 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.296 1.296 28 C 0.130 3.870 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.244 0.756 42 H 0.023 0.977 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 -18.654 3.193 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.035 4.035 3 N -0.349 5.349 4 C 0.308 3.692 5 O -0.237 6.237 6 C -0.098 4.098 7 C -0.110 4.110 8 C -0.173 4.173 9 C -0.095 4.095 10 C -0.362 4.362 11 S 0.361 5.639 12 C -0.257 4.257 13 N -0.152 5.152 14 H 0.274 0.726 15 C 0.030 3.970 16 H 0.101 0.899 17 C -0.200 4.200 18 C 0.065 3.935 19 N -0.292 5.292 20 C -0.321 4.321 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.570 5.570 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.224 1.224 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.894 -19.174 2.988 20.950 hybrid contribution 0.181 1.655 0.479 1.733 sum -7.714 -17.519 3.467 19.453 Atomic orbital electron populations 1.22554 0.96366 1.02257 1.04038 1.21806 0.93971 0.84903 1.02829 1.47748 1.67594 1.12409 1.07146 1.17490 0.82248 0.87866 0.81643 1.91763 1.37772 1.10936 1.83215 1.20832 1.06003 0.86363 0.96559 1.20782 1.02224 0.99475 0.88525 1.19402 1.09015 0.96484 0.92425 1.20389 0.98826 0.97109 0.93157 1.24738 1.10636 0.99493 1.01341 1.83605 1.67397 1.18805 0.94127 1.23571 1.10959 1.02175 0.88973 1.43252 1.50230 1.17433 1.04247 0.72580 1.22349 0.95856 0.94916 0.83884 0.89919 1.23402 0.94482 1.01292 1.00858 1.21120 0.87507 0.87007 0.97827 1.44141 1.06985 1.20260 1.57830 1.18821 0.95763 0.93021 1.24476 0.91500 1.24547 0.96136 0.98382 1.00983 1.69949 1.03093 1.38107 1.45832 0.86223 0.77081 0.84381 0.79200 1.21025 1.22186 1.22381 1.21761 0.94535 0.88543 0.94902 0.91953 0.90681 0.91442 0.89523 0.91072 0.82642 0.83976 0.81635 0.92426 0.91876 0.92337 0.95076 0.94566 0.95920 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.90 37.16 0.33 -1.54 16 2 C 0.09 0.99 5.64 -4.04 -0.02 0.97 16 3 N -0.61 -9.76 2.58 -165.26 -0.43 -10.19 16 4 C 0.52 10.33 7.03 -12.93 -0.09 10.24 16 5 O -0.37 -9.29 8.79 5.17 0.05 -9.25 16 6 C 0.02 0.27 6.43 -82.47 -0.53 -0.26 16 7 C -0.08 -1.51 10.60 -38.82 -0.41 -1.92 16 8 C -0.16 -2.52 6.80 -105.46 -0.72 -3.24 16 9 C -0.06 -0.82 10.42 -38.55 -0.40 -1.22 16 10 C -0.23 -2.43 11.03 28.84 0.32 -2.11 16 11 S 0.11 1.18 23.24 -107.50 -2.50 -1.32 16 12 C -0.03 -0.41 8.41 -15.05 -0.13 -0.54 16 13 N -0.54 -7.54 4.30 -7.94 -0.03 -7.57 16 14 H 0.42 4.83 3.50 -40.82 -0.14 4.68 16 15 C 0.13 2.25 3.77 -65.78 -0.25 2.00 16 16 H 0.08 1.09 7.88 -51.93 -0.41 0.69 16 17 C -0.16 -3.02 6.52 -24.90 -0.16 -3.19 16 18 C 0.19 4.75 4.21 -3.07 -0.01 4.74 16 19 N -0.57 -14.69 1.74 -170.08 -0.30 -14.99 16 20 C -0.19 -5.56 8.78 -15.06 -0.13 -5.69 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 23 N -0.92 -28.22 10.31 55.49 0.57 -27.65 16 24 Si 0.90 23.48 29.55 -169.99 -5.02 18.45 16 25 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 27 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 28 C 0.13 2.72 6.21 -2.53 -0.02 2.70 16 29 H 0.06 0.73 6.59 -51.93 -0.34 0.38 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.07 0.77 4.98 -51.93 -0.26 0.52 16 34 H 0.16 3.01 8.06 -52.49 -0.42 2.59 16 35 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.67 5.76 -51.93 -0.30 1.37 16 40 H 0.03 0.88 7.50 -51.93 -0.39 0.49 16 41 H 0.24 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -34.30 345.38 -10.38 -44.68 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.60 Total: 1.94 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.32 Total: 0.69 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.18 Total: -60.40 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.05 Total: -9.25 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.45 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.50 Total: -1.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.30 -10.38 -44.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033914379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.569 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds