Wall clock time and date at job start Tue Mar 31 2020 19:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46491 * 109.47079 * 2 1 4 4 C 1.34774 * 120.00472 * 82.48818 * 3 2 1 5 5 O 1.21722 * 120.00759 * 183.78493 * 4 3 2 6 6 C 1.46503 * 119.99623 * 3.78446 * 4 3 2 7 7 C 1.36109 * 125.71093 * 168.57906 * 6 4 3 8 8 C 1.42227 * 107.62756 * 179.97438 * 7 6 4 9 9 C 1.45588 * 140.78161 * 180.02562 * 8 7 6 10 10 C 1.31811 * 114.63442 * 180.02562 * 9 8 7 11 11 S 1.75357 * 111.24492 * 0.21207 * 10 9 8 12 12 C 1.38177 * 106.99139 * 0.02562 * 8 7 6 13 13 N 1.37458 * 108.16854 * 359.97438 * 12 8 7 14 14 H 0.97006 * 125.68321 * 180.02562 * 13 12 8 15 15 C 1.46510 * 120.00237 * 262.49068 * 3 2 1 16 16 H 1.09004 * 110.88237 * 9.64787 * 15 3 2 17 17 C 1.55156 * 111.00028 * 245.77409 * 15 3 2 18 18 C 1.54319 * 102.94360 * 277.42115 * 17 15 3 19 19 N 1.47017 * 107.27157 * 337.81316 * 18 17 15 20 20 C 1.36937 * 125.64845 * 178.98692 * 19 18 17 21 21 H 1.08003 * 120.00043 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00073 * 359.97198 * 20 19 18 23 23 N 1.31615 * 120.00197 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00128 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46949 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47420 * 119.99643 * 24 22 20 27 27 H 1.48500 * 109.47131 * 239.99878 * 24 22 20 28 28 C 1.47429 * 108.70641 * 358.93532 * 19 18 17 29 29 H 1.08993 * 109.47308 * 300.00441 * 1 2 3 30 30 H 1.09005 * 109.46580 * 60.00051 * 1 2 3 31 31 H 1.08994 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46762 * 239.99605 * 2 1 3 33 33 H 1.08996 * 109.46683 * 120.00079 * 2 1 3 34 34 H 1.07998 * 126.18820 * 359.96995 * 7 6 4 35 35 H 1.07998 * 122.68366 * 359.97438 * 9 8 7 36 36 H 1.07999 * 124.38205 * 180.02562 * 10 9 8 37 37 H 1.08998 * 110.72106 * 35.79402 * 17 15 3 38 38 H 1.09001 * 110.71594 * 159.05880 * 17 15 3 39 39 H 1.09003 * 109.87914 * 97.22676 * 18 17 15 40 40 H 1.08994 * 109.88366 * 218.23734 * 18 17 15 41 41 H 0.97003 * 120.00428 * 179.97438 * 23 22 20 42 42 H 1.08994 * 110.36848 * 265.29414 * 28 19 18 43 43 H 1.08999 * 110.36892 * 142.96700 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0992 2.0674 1.1571 5 8 2.4391 3.2362 1.1492 6 6 1.7779 1.4066 2.4246 7 6 2.0250 1.9066 3.6661 8 6 1.5596 0.9542 4.6144 9 6 1.4612 0.7497 6.0525 10 6 0.9038 -0.3904 6.4085 11 16 0.4451 -1.3385 5.0064 12 6 1.0390 -0.1070 3.8988 13 7 1.1734 0.1722 2.5595 14 1 0.8906 -0.4022 1.8307 15 6 2.4189 2.0166 -1.2579 16 1 2.1376 1.3999 -2.1115 17 6 3.9406 2.3194 -1.2680 18 6 4.0326 3.6535 -0.4978 19 7 2.7123 4.2953 -0.5771 20 6 2.3703 5.4907 -0.0034 21 1 1.3693 5.8791 -0.1206 22 6 3.3099 6.2033 0.7287 23 7 4.5295 5.7297 0.8720 24 14 2.8431 7.8337 1.5119 25 1 1.4232 8.1417 1.2051 26 1 3.0243 7.7461 2.9832 27 1 3.7109 8.9098 0.9695 28 6 1.8178 3.4392 -1.3774 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4903 2.8550 3.8907 35 1 1.8173 1.4739 6.7702 36 1 0.7521 -0.7020 7.4314 37 1 4.4932 1.5359 -0.7497 38 1 4.3034 2.4378 -2.2890 39 1 4.2903 3.4630 0.5440 40 1 4.7868 4.2942 -0.9549 41 1 5.1863 6.2278 1.3833 42 1 1.8138 3.7631 -2.4181 43 1 0.8074 3.4597 -0.9690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033914379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:01 Heat of formation + Delta-G solvation = 127.798652 kcal Electronic energy + Delta-G solvation = -27809.972095 eV Core-core repulsion = 24179.124476 eV Total energy + Delta-G solvation = -3630.847619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.60319 -40.85169 -37.79773 -37.24309 -35.96987 -34.15735 -32.09209 -31.09904 -30.47637 -29.66773 -28.59179 -26.37585 -24.90967 -23.90028 -23.66454 -21.85552 -21.61654 -20.87605 -20.29807 -19.04023 -18.50598 -17.78914 -17.10372 -16.52640 -16.47975 -16.20076 -15.70210 -15.61241 -15.50603 -15.32790 -14.73886 -14.54116 -14.08661 -13.79578 -13.63999 -13.61648 -13.51251 -13.38928 -12.91673 -12.79701 -12.77410 -12.73521 -12.67239 -12.26678 -12.12701 -11.95402 -11.78690 -11.69751 -11.60744 -11.37994 -10.62144 -10.43644 -10.38880 -9.46306 -9.20702 -8.56609 -8.30703 -7.62706 -4.85654 0.12656 0.38160 0.48791 1.06224 1.41767 1.44463 1.52190 1.94160 1.97212 2.29901 2.58065 2.60980 3.51589 3.56001 3.79351 3.82578 3.87747 3.94440 4.05640 4.16246 4.23780 4.34499 4.38337 4.49781 4.65233 4.66135 4.73678 4.76553 4.78783 4.90935 4.98949 5.04648 5.13207 5.16713 5.24216 5.27932 5.47561 5.55148 5.69384 5.82559 5.88993 6.04856 6.23640 6.42766 6.58039 7.33761 7.59011 8.04669 8.67713 9.49420 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.004598 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.682841 B = 6087.600733 C = 7661.721850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.083 3.917 3 N -0.605 5.605 4 C 0.521 3.479 5 O -0.443 6.443 6 C 0.004 3.996 7 C -0.116 4.116 8 C -0.184 4.184 9 C -0.095 4.095 10 C -0.209 4.209 11 S 0.173 5.827 12 C -0.038 4.038 13 N -0.518 5.518 14 H 0.437 0.563 15 C 0.148 3.852 16 H 0.143 0.857 17 C -0.146 4.146 18 C 0.201 3.799 19 N -0.581 5.581 20 C -0.189 4.189 21 H 0.061 0.939 22 C -0.064 4.064 23 N -0.948 5.948 24 Si 0.955 3.045 25 H -0.273 1.273 26 H -0.303 1.303 27 H -0.294 1.294 28 C 0.123 3.877 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.152 0.848 36 H 0.204 0.796 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.014 0.986 40 H -0.015 1.015 41 H 0.233 0.767 42 H 0.039 0.961 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 -22.976 2.653 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.040 4.040 3 N -0.342 5.342 4 C 0.306 3.694 5 O -0.310 6.310 6 C -0.110 4.110 7 C -0.144 4.144 8 C -0.196 4.196 9 C -0.125 4.125 10 C -0.343 4.343 11 S 0.425 5.575 12 C -0.266 4.266 13 N -0.135 5.135 14 H 0.290 0.710 15 C 0.045 3.955 16 H 0.160 0.840 17 C -0.186 4.186 18 C 0.076 3.924 19 N -0.305 5.305 20 C -0.319 4.319 21 H 0.079 0.921 22 C -0.256 4.256 23 N -0.600 5.600 24 Si 0.786 3.214 25 H -0.198 1.198 26 H -0.231 1.231 27 H -0.222 1.222 28 C -0.003 4.003 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.124 0.876 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.170 0.830 36 H 0.221 0.779 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.032 0.968 40 H 0.003 0.997 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.236 -23.585 2.392 25.821 hybrid contribution 0.775 2.837 0.736 3.032 sum -9.460 -20.748 3.128 23.016 Atomic orbital electron populations 1.22516 0.94941 1.04400 1.02835 1.22183 0.95021 0.81896 1.04866 1.47799 1.66448 1.14202 1.05709 1.17848 0.81046 0.87445 0.83061 1.91730 1.41003 1.13788 1.84504 1.20409 1.07304 0.87931 0.95380 1.20704 1.03820 0.99375 0.90473 1.19670 1.09482 0.96354 0.94116 1.20520 1.01219 0.98890 0.91915 1.25281 1.07589 0.98117 1.03300 1.83472 1.65727 1.16230 0.92030 1.24140 1.10233 1.03253 0.88938 1.43035 1.49390 1.16172 1.04869 0.70957 1.22342 0.93583 0.93662 0.85957 0.83974 1.23240 0.96584 0.97582 1.01157 1.20758 0.86253 0.89396 0.95955 1.44275 1.08349 1.20095 1.57827 1.19050 0.95158 0.94160 1.23577 0.92125 1.25209 0.96392 1.01576 1.02450 1.70194 1.03836 1.39034 1.46908 0.85318 0.77275 0.81122 0.77646 1.19773 1.23132 1.22190 1.21990 0.93363 0.90523 0.94416 0.94455 0.90648 0.87557 0.85612 0.90827 0.86006 0.83037 0.77868 0.91348 0.89368 0.96769 0.99688 0.95727 0.94346 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 8.90 71.99 0.64 -2.26 16 2 C 0.08 1.50 5.64 86.38 0.49 1.99 16 3 N -0.61 -18.36 2.58 -794.96 -2.05 -20.41 16 4 C 0.52 21.29 7.03 86.40 0.61 21.90 16 5 O -0.44 -23.54 8.79 -4.42 -0.04 -23.58 16 6 C 0.00 0.14 6.43 39.81 0.26 0.40 16 7 C -0.12 -4.58 10.60 22.77 0.24 -4.34 16 8 C -0.18 -5.89 6.80 -20.41 -0.14 -6.03 16 9 C -0.10 -2.34 10.42 23.39 0.24 -2.10 16 10 C -0.21 -3.76 11.03 67.05 0.74 -3.02 16 11 S 0.17 3.12 23.24 -56.49 -1.31 1.81 16 12 C -0.04 -1.01 8.41 83.80 0.70 -0.31 16 13 N -0.52 -14.01 4.30 -179.03 -0.77 -14.78 16 14 H 0.44 8.82 3.50 -92.70 -0.32 8.49 16 15 C 0.15 4.60 3.77 46.38 0.17 4.77 16 16 H 0.14 2.87 7.88 -2.39 -0.02 2.86 16 17 C -0.15 -5.33 6.52 31.78 0.21 -5.12 16 18 C 0.20 10.62 4.21 86.73 0.37 10.99 16 19 N -0.58 -31.38 1.74 -692.02 -1.20 -32.58 16 20 C -0.19 -11.54 8.78 84.03 0.74 -10.80 16 21 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 22 C -0.06 -4.03 5.48 84.86 0.47 -3.57 16 23 N -0.95 -62.42 10.31 21.65 0.22 -62.19 16 24 Si 0.95 50.99 29.55 68.60 2.03 53.02 16 25 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.30 -16.45 7.11 99.48 0.71 -15.74 16 27 H -0.29 -15.46 7.11 99.48 0.71 -14.76 16 28 C 0.12 5.09 6.21 86.85 0.54 5.63 16 29 H 0.04 0.78 6.59 -2.39 -0.02 0.76 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 1.41 7.89 -2.39 -0.02 1.39 16 33 H 0.07 1.35 4.98 -2.39 -0.01 1.33 16 34 H 0.12 5.47 8.06 -2.91 -0.02 5.44 16 35 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.20 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.01 0.88 5.76 -2.39 -0.01 0.87 16 40 H -0.01 -0.90 7.50 -2.39 -0.02 -0.92 16 41 H 0.23 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -84.95 345.38 3.87 -81.08 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.72 Total: 9.49 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.27 Total: 8.14 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -3.80 Total: -129.96 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.04 Total: -23.58 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.03 Total: 53.02 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -84.95 3.87 -81.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033914379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.880 kcal (2) G-P(sol) polarization free energy of solvation -84.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds