Wall clock time and date at job start Tue Mar 31 2020 19:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47250 * 2 1 4 4 C 1.34773 * 120.00169 * 271.11775 * 3 2 1 5 5 O 1.21728 * 120.00316 * 186.00153 * 4 3 2 6 6 C 1.46500 * 119.99990 * 6.00104 * 4 3 2 7 7 C 1.36115 * 125.70819 * 187.78678 * 6 4 3 8 8 C 1.42230 * 107.62114 * 179.85069 * 7 6 4 9 9 C 1.45593 * 140.77594 * 180.08984 * 8 7 6 10 10 C 1.31812 * 114.62930 * 180.32600 * 9 8 7 11 11 S 1.75353 * 111.24699 * 0.03349 * 10 9 8 12 12 C 1.38173 * 106.99682 * 0.40664 * 8 7 6 13 13 N 1.37462 * 108.16610 * 359.75050 * 12 8 7 14 14 H 0.97002 * 125.68351 * 179.97438 * 13 12 8 15 15 C 1.46498 * 119.99720 * 91.12012 * 3 2 1 16 16 H 1.08994 * 110.92018 * 2.44636 * 15 3 2 17 17 C 1.55151 * 111.00656 * 126.35261 * 15 3 2 18 18 C 1.54326 * 102.94668 * 153.57409 * 17 15 3 19 19 N 1.47022 * 107.26679 * 337.80470 * 18 17 15 20 20 C 1.36932 * 125.64615 * 178.90665 * 19 18 17 21 21 H 1.08006 * 120.00422 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00182 * 0.02562 * 20 19 18 23 23 N 1.31618 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00269 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47226 * 119.99930 * 24 22 20 27 27 H 1.48494 * 109.47442 * 240.00374 * 24 22 20 28 28 C 1.47427 * 108.70406 * 358.94159 * 19 18 17 29 29 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46508 * 299.99721 * 1 2 3 31 31 H 1.09000 * 109.47418 * 59.99565 * 1 2 3 32 32 H 1.09001 * 109.46508 * 240.00279 * 2 1 3 33 33 H 1.09000 * 109.47418 * 120.00435 * 2 1 3 34 34 H 1.07996 * 126.19175 * 359.97438 * 7 6 4 35 35 H 1.07997 * 122.68486 * 0.35087 * 9 8 7 36 36 H 1.07999 * 124.37528 * 179.97438 * 10 9 8 37 37 H 1.09000 * 110.72438 * 35.20543 * 17 15 3 38 38 H 1.09001 * 110.71694 * 271.93982 * 17 15 3 39 39 H 1.08997 * 109.88059 * 218.38966 * 18 17 15 40 40 H 1.08996 * 109.88196 * 97.21736 * 18 17 15 41 41 H 0.97000 * 119.99920 * 180.02562 * 23 22 20 42 42 H 1.09000 * 110.36587 * 142.96561 * 28 19 18 43 43 H 1.08997 * 110.36527 * 265.17857 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2215 2.0242 -1.1669 5 8 2.7295 3.1304 -1.1720 6 6 1.8311 1.3917 -2.4294 7 6 2.1142 1.8625 -3.6747 8 6 1.5592 0.9519 -4.6158 9 6 1.4353 0.7504 -6.0524 10 6 0.7682 -0.3321 -6.3997 11 16 0.2195 -1.2199 -4.9906 12 6 0.9414 -0.0501 -3.8922 13 7 1.1091 0.2210 -2.5551 14 1 0.7755 -0.3195 -1.8220 15 6 2.2859 2.0635 1.2685 16 1 2.1137 1.3964 2.1131 17 6 3.7270 2.6375 1.2981 18 6 3.6079 3.8202 2.2824 19 7 2.1918 4.2133 2.3230 20 6 1.6631 5.2134 3.0944 21 1 0.6048 5.4255 3.0529 22 6 2.4871 5.9549 3.9300 23 7 3.7767 5.6968 3.9804 24 14 1.7656 7.3187 4.9830 25 1 0.3024 7.4065 4.7450 26 1 2.0166 7.0228 6.4164 27 1 2.4041 8.6108 4.6252 28 6 1.4353 3.3519 1.3961 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.6629 2.7634 -3.9064 35 1 1.8566 1.4329 -6.7755 36 1 0.5826 -0.6328 -7.4203 37 1 4.0233 2.9872 0.3092 38 1 4.4307 1.8938 1.6721 39 1 4.2147 4.6556 1.9332 40 1 3.9353 3.5108 3.2749 41 1 4.3525 6.2147 4.5645 42 1 0.4541 3.1192 1.8099 43 1 1.3316 3.8376 0.4259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033914381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:09 Heat of formation + Delta-G solvation = 105.291715 kcal Electronic energy + Delta-G solvation = -26606.327435 eV Core-core repulsion = 22974.503842 eV Total energy + Delta-G solvation = -3631.823593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.76402 -39.64698 -36.81960 -36.31984 -35.13144 -32.47366 -31.12652 -30.12576 -29.21742 -28.59642 -27.02793 -24.62952 -23.95556 -23.22567 -22.41384 -20.74341 -20.12215 -20.03763 -19.44544 -18.16915 -16.94492 -16.75798 -15.78914 -15.51811 -15.42160 -14.85094 -14.59060 -14.43389 -14.37926 -14.07439 -13.82591 -13.35836 -13.21120 -12.95375 -12.78432 -12.33457 -12.19831 -12.09525 -12.03622 -11.93750 -11.73618 -11.42902 -11.06418 -10.87640 -10.86056 -10.72182 -10.45732 -10.03040 -9.92101 -9.65096 -9.63069 -9.24764 -8.63640 -8.45726 -8.43202 -7.84980 -6.74229 -5.64487 -2.97692 0.86200 1.12938 1.29219 1.75177 2.73146 2.83643 3.07341 3.40206 3.43752 3.49035 3.51629 4.24517 4.42087 4.55877 4.58697 4.71666 4.80826 4.93818 5.20624 5.25004 5.33509 5.37069 5.45464 5.49733 5.56881 5.61168 5.78726 5.82723 5.85744 5.91233 6.00308 6.17145 6.28165 6.50131 6.54843 6.57688 6.65522 6.77135 6.96275 7.12736 7.45274 7.63183 7.75597 7.90699 8.23930 8.32852 9.28534 9.88661 10.55257 11.47117 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.002664 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.893366 B =10507.569796 C =10790.111369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.084 3.916 3 N -0.601 5.601 4 C 0.582 3.418 5 O -0.495 6.495 6 C -0.001 4.001 7 C -0.073 4.073 8 C -0.162 4.162 9 C -0.067 4.067 10 C -0.224 4.224 11 S 0.123 5.877 12 C -0.020 4.020 13 N -0.534 5.534 14 H 0.428 0.572 15 C 0.132 3.868 16 H 0.094 0.906 17 C -0.161 4.161 18 C 0.185 3.815 19 N -0.601 5.601 20 C -0.224 4.224 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.132 3.868 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.033 0.967 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 -18.967 -17.719 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.040 4.040 3 N -0.334 5.334 4 C 0.369 3.631 5 O -0.368 6.368 6 C -0.114 4.114 7 C -0.101 4.101 8 C -0.175 4.175 9 C -0.098 4.098 10 C -0.358 4.358 11 S 0.376 5.624 12 C -0.248 4.248 13 N -0.149 5.149 14 H 0.279 0.721 15 C 0.029 3.971 16 H 0.112 0.888 17 C -0.200 4.200 18 C 0.060 3.940 19 N -0.328 5.328 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.004 3.996 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.162 0.838 36 H 0.186 0.814 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.705 -19.551 -17.173 26.872 hybrid contribution 0.203 1.597 0.704 1.757 sum -6.502 -17.953 -16.468 25.215 Atomic orbital electron populations 1.22583 0.95871 1.02927 1.04360 1.21953 0.94413 0.83858 1.03754 1.47864 1.65863 1.13181 1.06489 1.17008 0.79315 0.85189 0.81550 1.90914 1.41698 1.18492 1.85745 1.20269 1.05284 0.90097 0.95726 1.20766 1.01347 0.99506 0.88438 1.19405 1.07505 0.98002 0.92595 1.20363 0.98968 0.97457 0.92969 1.24826 1.08535 1.00872 1.01587 1.83814 1.59860 1.24951 0.93800 1.23661 1.08994 1.03443 0.88725 1.43131 1.45471 1.21529 1.04739 0.72140 1.22488 0.97954 0.94290 0.82414 0.88820 1.23393 0.94164 0.99387 1.03090 1.21065 0.85733 0.92122 0.95081 1.44335 1.03492 1.37719 1.47253 1.19083 0.92855 1.07631 1.15710 0.90512 1.24800 0.95673 0.99846 1.00240 1.69984 1.02840 1.42399 1.41666 0.86041 0.77989 0.81789 0.79931 1.20569 1.21830 1.21750 1.21765 0.93581 0.89528 0.94689 0.90774 0.89929 0.91886 0.90515 0.88692 0.82516 0.83768 0.81355 0.89394 0.92739 0.93804 0.93782 0.93859 0.94879 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 8.92 37.16 0.33 -1.34 16 2 C 0.08 0.82 5.60 -4.04 -0.02 0.80 16 3 N -0.60 -8.75 2.56 -165.27 -0.42 -9.18 16 4 C 0.58 9.58 6.88 -12.93 -0.09 9.49 16 5 O -0.49 -10.16 12.93 5.16 0.07 -10.09 16 6 C 0.00 -0.01 6.51 -82.47 -0.54 -0.55 16 7 C -0.07 -0.99 10.59 -38.81 -0.41 -1.40 16 8 C -0.16 -1.95 6.80 -105.46 -0.72 -2.67 16 9 C -0.07 -0.63 10.42 -38.54 -0.40 -1.03 16 10 C -0.22 -1.76 11.03 28.84 0.32 -1.44 16 11 S 0.12 1.03 23.24 -107.50 -2.50 -1.47 16 12 C -0.02 -0.22 8.41 -15.05 -0.13 -0.35 16 13 N -0.53 -5.95 4.28 -7.94 -0.03 -5.99 16 14 H 0.43 3.84 3.32 -40.82 -0.14 3.70 16 15 C 0.13 2.35 3.55 -65.79 -0.23 2.12 16 16 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 17 C -0.16 -3.29 6.28 -24.90 -0.16 -3.45 16 18 C 0.18 4.75 5.37 -3.06 -0.02 4.73 16 19 N -0.60 -16.12 3.39 -170.07 -0.58 -16.70 16 20 C -0.22 -6.49 10.28 -15.06 -0.15 -6.65 16 21 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -27.88 10.31 55.49 0.57 -27.31 16 24 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 C 0.13 2.90 6.63 -2.53 -0.02 2.89 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 32 H 0.08 0.67 5.22 -51.93 -0.27 0.40 16 33 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.16 2.04 8.06 -52.49 -0.42 1.61 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.09 1.91 5.49 -51.93 -0.29 1.62 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.04 1.27 7.51 -51.93 -0.39 0.88 16 40 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.03 0.82 6.29 -51.93 -0.33 0.49 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -34.40 350.69 -10.41 -44.81 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.45 Total: 2.16 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.33 Total: 0.80 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.46 Total: -59.18 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.40 -10.41 -44.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033914381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.106 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds