Wall clock time and date at job start Tue Mar 31 2020 19:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47250 * 2 1 4 4 C 1.34773 * 120.00169 * 271.11775 * 3 2 1 5 5 O 1.21728 * 120.00316 * 186.00153 * 4 3 2 6 6 C 1.46500 * 119.99990 * 6.00104 * 4 3 2 7 7 C 1.36115 * 125.70819 * 187.78678 * 6 4 3 8 8 C 1.42230 * 107.62114 * 179.85069 * 7 6 4 9 9 C 1.45593 * 140.77594 * 180.08984 * 8 7 6 10 10 C 1.31812 * 114.62930 * 180.32600 * 9 8 7 11 11 S 1.75353 * 111.24699 * 0.03349 * 10 9 8 12 12 C 1.38173 * 106.99682 * 0.40664 * 8 7 6 13 13 N 1.37462 * 108.16610 * 359.75050 * 12 8 7 14 14 H 0.97002 * 125.68351 * 179.97438 * 13 12 8 15 15 C 1.46498 * 119.99720 * 91.12012 * 3 2 1 16 16 H 1.08994 * 110.92018 * 2.44636 * 15 3 2 17 17 C 1.55151 * 111.00656 * 126.35261 * 15 3 2 18 18 C 1.54326 * 102.94668 * 153.57409 * 17 15 3 19 19 N 1.47022 * 107.26679 * 337.80470 * 18 17 15 20 20 C 1.36932 * 125.64615 * 178.90665 * 19 18 17 21 21 H 1.08006 * 120.00422 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00182 * 0.02562 * 20 19 18 23 23 N 1.31618 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00269 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47226 * 119.99930 * 24 22 20 27 27 H 1.48494 * 109.47442 * 240.00374 * 24 22 20 28 28 C 1.47427 * 108.70406 * 358.94159 * 19 18 17 29 29 H 1.09000 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46508 * 299.99721 * 1 2 3 31 31 H 1.09000 * 109.47418 * 59.99565 * 1 2 3 32 32 H 1.09001 * 109.46508 * 240.00279 * 2 1 3 33 33 H 1.09000 * 109.47418 * 120.00435 * 2 1 3 34 34 H 1.07996 * 126.19175 * 359.97438 * 7 6 4 35 35 H 1.07997 * 122.68486 * 0.35087 * 9 8 7 36 36 H 1.07999 * 124.37528 * 179.97438 * 10 9 8 37 37 H 1.09000 * 110.72438 * 35.20543 * 17 15 3 38 38 H 1.09001 * 110.71694 * 271.93982 * 17 15 3 39 39 H 1.08997 * 109.88059 * 218.38966 * 18 17 15 40 40 H 1.08996 * 109.88196 * 97.21736 * 18 17 15 41 41 H 0.97000 * 119.99920 * 180.02562 * 23 22 20 42 42 H 1.09000 * 110.36587 * 142.96561 * 28 19 18 43 43 H 1.08997 * 110.36527 * 265.17857 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2215 2.0242 -1.1669 5 8 2.7295 3.1304 -1.1720 6 6 1.8311 1.3917 -2.4294 7 6 2.1142 1.8625 -3.6747 8 6 1.5592 0.9519 -4.6158 9 6 1.4353 0.7504 -6.0524 10 6 0.7682 -0.3321 -6.3997 11 16 0.2195 -1.2199 -4.9906 12 6 0.9414 -0.0501 -3.8922 13 7 1.1091 0.2210 -2.5551 14 1 0.7755 -0.3195 -1.8220 15 6 2.2859 2.0635 1.2685 16 1 2.1137 1.3964 2.1131 17 6 3.7270 2.6375 1.2981 18 6 3.6079 3.8202 2.2824 19 7 2.1918 4.2133 2.3230 20 6 1.6631 5.2134 3.0944 21 1 0.6048 5.4255 3.0529 22 6 2.4871 5.9549 3.9300 23 7 3.7767 5.6968 3.9804 24 14 1.7656 7.3187 4.9830 25 1 0.3024 7.4065 4.7450 26 1 2.0166 7.0228 6.4164 27 1 2.4041 8.6108 4.6252 28 6 1.4353 3.3519 1.3961 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.6629 2.7634 -3.9064 35 1 1.8566 1.4329 -6.7755 36 1 0.5826 -0.6328 -7.4203 37 1 4.0233 2.9872 0.3092 38 1 4.4307 1.8938 1.6721 39 1 4.2147 4.6556 1.9332 40 1 3.9353 3.5108 3.2749 41 1 4.3525 6.2147 4.5645 42 1 0.4541 3.1192 1.8099 43 1 1.3316 3.8376 0.4259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033914381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:08 Heat of formation + Delta-G solvation = 84.095440 kcal Electronic energy + Delta-G solvation = -26607.246575 eV Core-core repulsion = 22974.503842 eV Total energy + Delta-G solvation = -3632.742733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.74688 -40.90437 -38.50537 -37.42647 -36.09503 -34.35540 -32.32854 -31.39607 -30.65132 -29.88200 -28.60196 -26.52548 -25.02857 -23.98422 -23.53373 -22.06812 -22.02772 -21.14301 -20.30335 -19.32417 -18.83761 -17.92913 -17.12298 -16.71881 -16.53055 -16.37644 -15.91270 -15.61853 -15.43425 -15.37238 -14.87378 -14.79641 -14.38703 -14.21851 -13.97455 -13.75030 -13.66897 -13.54509 -13.09544 -12.92113 -12.80677 -12.77080 -12.70785 -12.36246 -12.22865 -12.14743 -11.99328 -11.86757 -11.75708 -11.62693 -10.83106 -10.68654 -10.53306 -9.84960 -9.26176 -8.91473 -8.62262 -7.86528 -5.23406 0.09825 0.19770 0.43480 1.07687 1.43358 1.45917 1.55932 1.67861 1.80963 2.16815 2.30865 2.48599 3.25852 3.32930 3.63661 3.69903 3.80105 3.83610 3.94919 4.02706 4.10146 4.19371 4.26096 4.41134 4.50643 4.63491 4.64181 4.69762 4.72739 4.77673 4.88211 4.95083 5.02821 5.16277 5.19488 5.24183 5.40870 5.43995 5.54646 5.65438 5.66475 5.72696 6.12027 6.16533 6.28830 6.99586 7.07133 7.73394 8.39106 9.24093 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026562 B = 0.002664 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.893366 B =10507.569796 C =10790.111369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.077 3.923 3 N -0.595 5.595 4 C 0.579 3.421 5 O -0.549 6.549 6 C -0.016 4.016 7 C -0.088 4.088 8 C -0.182 4.182 9 C -0.089 4.089 10 C -0.211 4.211 11 S 0.166 5.834 12 C -0.028 4.028 13 N -0.522 5.522 14 H 0.437 0.563 15 C 0.153 3.847 16 H 0.123 0.877 17 C -0.149 4.149 18 C 0.196 3.804 19 N -0.622 5.622 20 C -0.244 4.244 21 H 0.081 0.919 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.983 3.017 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.294 1.294 28 C 0.130 3.870 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.203 0.797 37 H 0.072 0.928 38 H 0.083 0.917 39 H -0.005 1.005 40 H 0.021 0.979 41 H 0.247 0.753 42 H 0.045 0.955 43 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 -22.178 -18.869 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.045 4.045 3 N -0.327 5.327 4 C 0.369 3.631 5 O -0.427 6.427 6 C -0.130 4.130 7 C -0.116 4.116 8 C -0.195 4.195 9 C -0.119 4.119 10 C -0.345 4.345 11 S 0.419 5.581 12 C -0.257 4.257 13 N -0.138 5.138 14 H 0.290 0.710 15 C 0.049 3.951 16 H 0.141 0.859 17 C -0.188 4.188 18 C 0.070 3.930 19 N -0.349 5.349 20 C -0.372 4.372 21 H 0.099 0.901 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.189 1.189 26 H -0.213 1.213 27 H -0.221 1.221 28 C 0.004 3.996 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.220 0.780 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.013 0.987 40 H 0.039 0.961 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -8.823 -22.840 -18.335 30.589 hybrid contribution 0.790 2.526 0.896 2.794 sum -8.033 -20.314 -17.439 27.952 Atomic orbital electron populations 1.22563 0.94508 1.05074 1.03192 1.22342 0.95481 0.80935 1.05742 1.47843 1.65361 1.14853 1.04622 1.17379 0.78406 0.84620 0.82728 1.90885 1.44279 1.20916 1.86650 1.19788 1.07146 0.91618 0.94407 1.20888 1.01623 0.99783 0.89302 1.19709 1.07753 0.97902 0.94109 1.20544 1.00525 0.98899 0.91949 1.25316 1.06409 0.99650 1.03091 1.83763 1.58571 1.23242 0.92534 1.24172 1.08657 1.04249 0.88660 1.42960 1.44924 1.20641 1.05290 0.70981 1.22131 0.94705 0.93302 0.84929 0.85932 1.23183 0.96843 0.98024 1.00719 1.20769 0.84833 0.92431 0.94931 1.44640 1.04438 1.38224 1.47551 1.19485 0.93273 1.08526 1.15962 0.90095 1.25722 0.96102 1.02416 1.01809 1.70214 1.04115 1.43395 1.42327 0.84944 0.77906 0.78131 0.77929 1.18947 1.21277 1.22112 1.21843 0.94546 0.90741 0.92498 0.86928 0.90998 0.93169 0.89111 0.86128 0.83440 0.82215 0.78027 0.90914 0.89881 0.98665 0.96121 0.94321 0.93629 0.97117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 8.92 71.98 0.64 -2.03 16 2 C 0.08 1.27 5.60 86.38 0.48 1.76 16 3 N -0.60 -16.81 2.56 -794.99 -2.04 -18.85 16 4 C 0.58 19.54 6.88 86.40 0.59 20.13 16 5 O -0.55 -24.00 12.93 -4.44 -0.06 -24.05 16 6 C -0.02 -0.46 6.51 39.81 0.26 -0.20 16 7 C -0.09 -2.45 10.59 22.77 0.24 -2.21 16 8 C -0.18 -4.22 6.80 -20.40 -0.14 -4.36 16 9 C -0.09 -1.48 10.42 23.39 0.24 -1.24 16 10 C -0.21 -2.55 11.03 67.04 0.74 -1.81 16 11 S 0.17 2.20 23.24 -56.49 -1.31 0.88 16 12 C -0.03 -0.58 8.41 83.79 0.70 0.13 16 13 N -0.52 -10.82 4.28 -179.04 -0.77 -11.58 16 14 H 0.44 6.72 3.32 -92.71 -0.31 6.41 16 15 C 0.15 5.40 3.55 46.38 0.16 5.57 16 16 H 0.12 3.68 7.86 -2.39 -0.02 3.66 16 17 C -0.15 -6.20 6.28 31.78 0.20 -6.00 16 18 C 0.20 10.58 5.37 86.73 0.47 11.04 16 19 N -0.62 -34.58 3.39 -691.99 -2.35 -36.93 16 20 C -0.24 -14.48 10.28 84.03 0.86 -13.62 16 21 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 23 N -0.95 -59.99 10.31 21.65 0.22 -59.77 16 24 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 28 C 0.13 5.86 6.63 86.85 0.58 6.44 16 29 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 0.84 6.46 -2.39 -0.02 0.82 16 32 H 0.09 1.30 5.22 -2.39 -0.01 1.29 16 33 H 0.12 1.46 7.92 -2.39 -0.02 1.44 16 34 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.07 3.31 5.49 -2.39 -0.01 3.30 16 38 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.00 -0.31 7.51 -2.39 -0.02 -0.33 16 40 H 0.02 1.19 7.38 -2.39 -0.02 1.17 16 41 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.01 0.55 6.29 -2.39 -0.02 0.54 16 Total: -1.00 -80.37 350.69 2.98 -77.39 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.74 Total: 13.23 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.51 Total: 10.02 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -4.93 Total: -127.13 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.31 Total: 0.88 kcal Total: -80.37 2.98 -77.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033914381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.486 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds