Wall clock time and date at job start Tue Mar 31 2020 19:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.34780 * 120.00135 * 270.89834 * 3 2 1 5 5 O 1.21729 * 120.00052 * 186.38707 * 4 3 2 6 6 C 1.46454 * 119.99557 * 6.38961 * 4 3 2 7 7 C 1.37466 * 125.80183 * 187.93300 * 6 4 3 8 8 C 1.40659 * 107.55522 * 180.02562 * 7 6 4 9 9 S 1.76027 * 142.39698 * 180.02562 * 8 7 6 10 10 C 1.75596 * 91.30931 * 180.02562 * 9 8 7 11 11 C 1.32769 * 110.47735 * 359.97438 * 10 9 8 12 12 C 1.38248 * 108.03369 * 0.02562 * 8 7 6 13 13 N 1.37922 * 125.81185 * 7.62306 * 6 4 3 14 14 H 0.97001 * 125.67944 * 359.97438 * 13 6 4 15 15 C 1.46493 * 120.00074 * 90.89627 * 3 2 1 16 16 H 1.09003 * 110.91991 * 10.66723 * 15 3 2 17 17 C 1.55157 * 111.00613 * 246.76751 * 15 3 2 18 18 C 1.54323 * 102.94151 * 277.42691 * 17 15 3 19 19 N 1.47024 * 107.27314 * 337.80694 * 18 17 15 20 20 C 1.36932 * 125.64763 * 178.90395 * 19 18 17 21 21 H 1.08003 * 119.99882 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00312 * 0.02815 * 20 19 18 23 23 N 1.31617 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99973 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46932 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47248 * 119.99731 * 24 22 20 27 27 H 1.48498 * 109.46589 * 239.99662 * 24 22 20 28 28 C 1.47429 * 108.70128 * 358.93781 * 19 18 17 29 29 H 1.08997 * 109.47194 * 300.00448 * 1 2 3 30 30 H 1.09002 * 109.47311 * 59.99933 * 1 2 3 31 31 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47502 * 239.99933 * 2 1 3 33 33 H 1.09002 * 109.47311 * 120.00067 * 2 1 3 34 34 H 1.07995 * 126.22257 * 359.97438 * 7 6 4 35 35 H 1.08001 * 124.75904 * 180.02562 * 10 9 8 36 36 H 1.07994 * 122.16410 * 179.97438 * 11 10 9 37 37 H 1.08997 * 110.72326 * 159.06558 * 17 15 3 38 38 H 1.08999 * 110.71942 * 35.79158 * 17 15 3 39 39 H 1.09001 * 109.88194 * 97.22621 * 18 17 15 40 40 H 1.09003 * 109.88271 * 218.23199 * 18 17 15 41 41 H 0.97000 * 119.99855 * 180.02562 * 23 22 20 42 42 H 1.09002 * 110.36203 * 142.96543 * 28 19 18 43 43 H 1.08992 * 110.36843 * 265.18383 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2258 2.0227 -1.1671 5 8 2.7402 3.1259 -1.1722 6 6 1.8321 1.3923 -2.4291 7 6 2.1226 1.8625 -3.6877 8 6 1.5630 0.9654 -4.6154 9 16 1.3817 0.6777 -6.3425 10 6 0.4669 -0.7908 -6.0428 11 6 0.3386 -1.0000 -4.7380 12 6 0.9353 -0.0441 -3.9094 13 7 1.1122 0.2229 -2.5569 14 1 0.7815 -0.3208 -1.8248 15 6 2.2813 2.0652 1.2685 16 1 2.2473 1.3645 2.1028 17 6 1.2871 3.2365 1.4853 18 6 1.9206 4.3830 0.6693 19 7 3.3507 4.0754 0.5218 20 6 4.2646 4.8358 -0.1576 21 1 5.2968 4.5222 -0.2085 22 6 3.8645 6.0098 -0.7809 23 7 2.6065 6.3918 -0.7192 24 14 5.1111 7.0468 -1.7083 25 1 6.4471 6.4032 -1.6289 26 1 4.6999 7.1609 -3.1307 27 1 5.1775 8.4007 -1.1020 28 6 3.6376 2.8123 1.2259 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.6787 2.7582 -3.9218 35 1 0.0656 -1.4341 -6.8119 36 1 -0.1927 -1.8527 -4.3419 37 1 1.2277 3.5016 2.5409 38 1 0.3017 2.9834 1.0941 39 1 1.4510 4.4426 -0.3126 40 1 1.7948 5.3278 1.1981 41 1 2.3268 7.2120 -1.1551 42 1 4.3747 2.2292 0.6736 43 1 3.9937 3.0135 2.2362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034007561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:14 Heat of formation + Delta-G solvation = 146.553981 kcal Electronic energy + Delta-G solvation = -27843.511041 eV Core-core repulsion = 24213.476714 eV Total energy + Delta-G solvation = -3630.034327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.39273 -39.47222 -36.24636 -35.88080 -34.78528 -32.32194 -30.90998 -29.91344 -28.95753 -28.15142 -26.90634 -24.38675 -23.71488 -23.02563 -22.31951 -20.74123 -19.89060 -19.79731 -18.72750 -17.49611 -16.60334 -16.38694 -15.89068 -15.34898 -15.07798 -14.57722 -14.34455 -14.25369 -13.94834 -13.79690 -13.55026 -13.15991 -12.81603 -12.79758 -12.53157 -12.11612 -11.92262 -11.75930 -11.72188 -11.61908 -11.52575 -11.19434 -10.76503 -10.71450 -10.68394 -10.68056 -9.97940 -9.90960 -9.70026 -9.54439 -9.39725 -8.90572 -8.38618 -7.95063 -7.87844 -7.51239 -6.24196 -5.38274 -2.63081 0.93516 1.63973 2.16831 2.31907 2.85712 3.02751 3.38390 3.57299 3.62534 3.64673 3.96979 4.61428 4.76036 4.78712 4.83400 4.94256 5.07998 5.14684 5.36727 5.41553 5.44702 5.51177 5.54136 5.67483 5.70592 5.84885 5.90605 5.97280 6.01827 6.11550 6.18426 6.22457 6.49971 6.56765 6.63480 6.68515 6.75227 6.90129 7.21568 7.46442 7.79702 7.88809 7.90375 8.12127 8.57183 9.01812 9.53699 10.15859 10.81364 11.75255 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004864 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.088985 B = 5754.999005 C = 7637.036203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.090 3.910 3 N -0.611 5.611 4 C 0.525 3.475 5 O -0.374 6.374 6 C 0.034 3.966 7 C -0.088 4.088 8 C -0.208 4.208 9 S 0.118 5.882 10 C -0.202 4.202 11 C -0.109 4.109 12 C 0.036 3.964 13 N -0.554 5.554 14 H 0.423 0.577 15 C 0.134 3.866 16 H 0.083 0.917 17 C -0.160 4.160 18 C 0.189 3.811 19 N -0.566 5.566 20 C -0.189 4.189 21 H 0.068 0.932 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.899 3.101 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.296 1.296 28 C 0.130 3.870 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.135 0.865 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.244 0.756 42 H 0.036 0.964 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 -19.211 -2.879 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.034 4.034 3 N -0.349 5.349 4 C 0.308 3.692 5 O -0.237 6.237 6 C -0.081 4.081 7 C -0.117 4.117 8 C -0.329 4.329 9 S 0.377 5.623 10 C -0.338 4.338 11 C -0.142 4.142 12 C -0.081 4.081 13 N -0.168 5.168 14 H 0.273 0.727 15 C 0.030 3.970 16 H 0.101 0.899 17 C -0.200 4.200 18 C 0.064 3.936 19 N -0.291 5.291 20 C -0.317 4.317 21 H 0.086 0.914 22 C -0.202 4.202 23 N -0.572 5.572 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.224 1.224 28 C 0.003 3.997 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.533 -17.679 -4.148 19.298 hybrid contribution -0.269 -0.697 0.945 1.205 sum -6.802 -18.376 -3.203 19.854 Atomic orbital electron populations 1.22579 0.96589 1.02277 1.03997 1.21797 0.93874 0.84737 1.03041 1.47747 1.68609 1.12597 1.05948 1.17529 0.82740 0.87285 0.81652 1.91789 1.34035 1.14403 1.83431 1.21144 1.02006 0.88690 0.96258 1.20464 1.03285 1.00009 0.87978 1.22680 1.10772 1.02503 0.96904 1.83856 1.56108 1.21446 1.00868 1.25124 1.07248 1.02525 0.98873 1.18829 1.03865 0.99756 0.91793 1.18451 1.06212 0.98836 0.84628 1.43692 1.46068 1.21728 1.05320 0.72726 1.22339 0.97740 0.93334 0.83597 0.89901 1.23402 0.97967 0.97923 1.00685 1.21096 0.84081 0.91543 0.96869 1.44129 1.04980 1.20870 1.59154 1.18823 0.88919 0.99839 1.24156 0.91424 1.24555 0.95884 0.98496 1.01257 1.69947 1.14096 1.24056 1.49056 0.86216 0.80471 0.80317 0.79861 1.20976 1.22201 1.22400 1.21763 0.93195 0.89161 0.95623 0.90626 0.91838 0.91412 0.90763 0.89711 0.82698 0.81489 0.84713 0.91876 0.92500 0.92780 0.94975 0.94570 0.94604 0.95841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 8.93 37.16 0.33 -1.49 16 2 C 0.09 0.98 5.62 -4.04 -0.02 0.95 16 3 N -0.61 -9.68 2.56 -165.28 -0.42 -10.11 16 4 C 0.52 10.33 7.05 -12.95 -0.09 10.24 16 5 O -0.37 -9.30 8.89 5.16 0.05 -9.26 16 6 C 0.03 0.60 6.56 -82.10 -0.54 0.07 16 7 C -0.09 -1.61 10.61 -38.95 -0.41 -2.03 16 8 C -0.21 -3.32 7.26 -38.66 -0.28 -3.60 16 9 S 0.12 1.50 23.31 -107.50 -2.51 -1.01 16 10 C -0.20 -2.07 11.13 28.86 0.32 -1.75 16 11 C -0.11 -1.20 10.16 -40.84 -0.42 -1.62 16 12 C 0.04 0.51 7.67 -84.00 -0.64 -0.14 16 13 N -0.55 -7.68 4.34 -7.34 -0.03 -7.71 16 14 H 0.42 4.67 3.33 -40.82 -0.14 4.53 16 15 C 0.13 2.24 3.80 -65.78 -0.25 1.99 16 16 H 0.08 1.09 7.84 -51.93 -0.41 0.68 16 17 C -0.16 -2.99 6.53 -24.90 -0.16 -3.15 16 18 C 0.19 4.72 4.22 -3.06 -0.01 4.71 16 19 N -0.57 -14.66 1.73 -170.07 -0.29 -14.96 16 20 C -0.19 -5.46 8.68 -15.06 -0.13 -5.59 16 21 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -28.43 10.31 55.49 0.57 -27.86 16 24 Si 0.90 23.55 29.55 -169.99 -5.02 18.53 16 25 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.84 7.11 56.52 0.40 -7.43 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 C 0.13 2.71 6.14 -2.52 -0.02 2.70 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.71 6.47 -51.93 -0.34 0.37 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.79 5.22 -51.93 -0.27 0.52 16 33 H 0.08 0.74 7.88 -51.93 -0.41 0.33 16 34 H 0.16 3.05 8.06 -52.49 -0.42 2.62 16 35 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.55 5.94 -51.93 -0.31 1.24 16 40 H 0.03 0.90 7.51 -51.93 -0.39 0.51 16 41 H 0.24 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -34.57 345.21 -10.49 -45.06 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.61 Total: 1.11 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.42 Total: 1.00 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.18 Total: -60.63 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.05 Total: -9.26 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.51 Total: -1.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.57 -10.49 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034007561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.610 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds