Wall clock time and date at job start Tue Mar 31 2020 19:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47385 * 2 1 4 4 C 1.34780 * 120.00135 * 270.89834 * 3 2 1 5 5 O 1.21729 * 120.00052 * 186.38707 * 4 3 2 6 6 C 1.46454 * 119.99557 * 6.38961 * 4 3 2 7 7 C 1.37466 * 125.80183 * 187.93300 * 6 4 3 8 8 C 1.40659 * 107.55522 * 180.02562 * 7 6 4 9 9 S 1.76027 * 142.39698 * 180.02562 * 8 7 6 10 10 C 1.75596 * 91.30931 * 180.02562 * 9 8 7 11 11 C 1.32769 * 110.47735 * 359.97438 * 10 9 8 12 12 C 1.38248 * 108.03369 * 0.02562 * 8 7 6 13 13 N 1.37922 * 125.81185 * 7.62306 * 6 4 3 14 14 H 0.97001 * 125.67944 * 359.97438 * 13 6 4 15 15 C 1.46493 * 120.00074 * 90.89627 * 3 2 1 16 16 H 1.09003 * 110.91991 * 10.66723 * 15 3 2 17 17 C 1.55157 * 111.00613 * 246.76751 * 15 3 2 18 18 C 1.54323 * 102.94151 * 277.42691 * 17 15 3 19 19 N 1.47024 * 107.27314 * 337.80694 * 18 17 15 20 20 C 1.36932 * 125.64763 * 178.90395 * 19 18 17 21 21 H 1.08003 * 119.99882 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00312 * 0.02815 * 20 19 18 23 23 N 1.31617 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99973 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46932 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47248 * 119.99731 * 24 22 20 27 27 H 1.48498 * 109.46589 * 239.99662 * 24 22 20 28 28 C 1.47429 * 108.70128 * 358.93781 * 19 18 17 29 29 H 1.08997 * 109.47194 * 300.00448 * 1 2 3 30 30 H 1.09002 * 109.47311 * 59.99933 * 1 2 3 31 31 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47502 * 239.99933 * 2 1 3 33 33 H 1.09002 * 109.47311 * 120.00067 * 2 1 3 34 34 H 1.07995 * 126.22257 * 359.97438 * 7 6 4 35 35 H 1.08001 * 124.75904 * 180.02562 * 10 9 8 36 36 H 1.07994 * 122.16410 * 179.97438 * 11 10 9 37 37 H 1.08997 * 110.72326 * 159.06558 * 17 15 3 38 38 H 1.08999 * 110.71942 * 35.79158 * 17 15 3 39 39 H 1.09001 * 109.88194 * 97.22621 * 18 17 15 40 40 H 1.09003 * 109.88271 * 218.23199 * 18 17 15 41 41 H 0.97000 * 119.99855 * 180.02562 * 23 22 20 42 42 H 1.09002 * 110.36203 * 142.96543 * 28 19 18 43 43 H 1.08992 * 110.36843 * 265.18383 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2258 2.0227 -1.1671 5 8 2.7402 3.1259 -1.1722 6 6 1.8321 1.3923 -2.4291 7 6 2.1226 1.8625 -3.6877 8 6 1.5630 0.9654 -4.6154 9 16 1.3817 0.6777 -6.3425 10 6 0.4669 -0.7908 -6.0428 11 6 0.3386 -1.0000 -4.7380 12 6 0.9353 -0.0441 -3.9094 13 7 1.1122 0.2229 -2.5569 14 1 0.7815 -0.3208 -1.8248 15 6 2.2813 2.0652 1.2685 16 1 2.2473 1.3645 2.1028 17 6 1.2871 3.2365 1.4853 18 6 1.9206 4.3830 0.6693 19 7 3.3507 4.0754 0.5218 20 6 4.2646 4.8358 -0.1576 21 1 5.2968 4.5222 -0.2085 22 6 3.8645 6.0098 -0.7809 23 7 2.6065 6.3918 -0.7192 24 14 5.1111 7.0468 -1.7083 25 1 6.4471 6.4032 -1.6289 26 1 4.6999 7.1609 -3.1307 27 1 5.1775 8.4007 -1.1020 28 6 3.6376 2.8123 1.2259 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.6787 2.7582 -3.9218 35 1 0.0656 -1.4341 -6.8119 36 1 -0.1927 -1.8527 -4.3419 37 1 1.2277 3.5016 2.5409 38 1 0.3017 2.9834 1.0941 39 1 1.4510 4.4426 -0.3126 40 1 1.7948 5.3278 1.1981 41 1 2.3268 7.2120 -1.1551 42 1 4.3747 2.2292 0.6736 43 1 3.9937 3.0135 2.2362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034007561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:13 Heat of formation + Delta-G solvation = 124.884340 kcal Electronic energy + Delta-G solvation = -27844.450708 eV Core-core repulsion = 24213.476714 eV Total energy + Delta-G solvation = -3630.973993 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.60799 -40.89351 -37.84539 -37.17019 -35.94062 -34.17429 -32.33406 -31.14128 -30.69323 -29.50754 -28.43845 -26.37611 -24.87450 -23.99568 -23.54559 -22.03521 -21.76619 -21.10955 -19.94170 -18.91554 -18.44084 -17.64373 -17.14028 -16.63068 -16.42957 -16.42174 -15.80304 -15.61865 -15.35748 -15.16016 -14.78162 -14.40484 -14.02304 -13.90292 -13.79680 -13.60075 -13.54075 -13.43288 -12.89375 -12.78956 -12.75965 -12.73667 -12.59473 -12.22457 -12.18284 -11.95885 -11.72761 -11.67585 -11.56766 -11.38642 -10.71650 -10.59001 -10.42568 -9.45890 -9.02575 -8.61941 -8.31308 -7.63454 -4.85651 -0.12272 0.61335 1.01529 1.20834 1.41102 1.44023 1.51744 1.82060 1.82716 2.19949 2.54055 2.60600 3.55648 3.59877 3.82420 3.83131 3.89902 3.96752 4.03930 4.19452 4.23129 4.35045 4.38615 4.45230 4.58715 4.68499 4.75739 4.78617 4.79378 4.91793 4.99510 5.03630 5.05899 5.10896 5.14600 5.27398 5.47492 5.55007 5.63009 5.81557 5.89086 6.01342 6.40235 6.41555 6.59101 7.33129 7.58155 8.04201 8.67253 9.48987 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004864 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.088985 B = 5754.999005 C = 7637.036203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.083 3.917 3 N -0.605 5.605 4 C 0.522 3.478 5 O -0.445 6.445 6 C 0.016 3.984 7 C -0.118 4.118 8 C -0.250 4.250 9 S 0.105 5.895 10 C -0.169 4.169 11 C -0.119 4.119 12 C 0.053 3.947 13 N -0.533 5.533 14 H 0.438 0.562 15 C 0.149 3.851 16 H 0.144 0.856 17 C -0.144 4.144 18 C 0.201 3.799 19 N -0.580 5.580 20 C -0.183 4.183 21 H 0.062 0.938 22 C -0.067 4.067 23 N -0.950 5.950 24 Si 0.954 3.046 25 H -0.272 1.272 26 H -0.305 1.305 27 H -0.294 1.294 28 C 0.122 3.878 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.212 0.788 36 H 0.178 0.822 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.007 0.993 40 H -0.014 1.014 41 H 0.232 0.768 42 H 0.024 0.976 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.867 -24.316 -2.133 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.039 4.039 3 N -0.341 5.341 4 C 0.307 3.693 5 O -0.313 6.313 6 C -0.099 4.099 7 C -0.148 4.148 8 C -0.369 4.369 9 S 0.363 5.637 10 C -0.305 4.305 11 C -0.152 4.152 12 C -0.066 4.066 13 N -0.148 5.148 14 H 0.291 0.709 15 C 0.045 3.955 16 H 0.161 0.839 17 C -0.184 4.184 18 C 0.076 3.924 19 N -0.304 5.304 20 C -0.314 4.314 21 H 0.080 0.920 22 C -0.259 4.259 23 N -0.603 5.603 24 Si 0.786 3.214 25 H -0.196 1.196 26 H -0.233 1.233 27 H -0.222 1.222 28 C -0.004 4.004 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.229 0.771 36 H 0.195 0.805 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.026 0.974 40 H 0.004 0.996 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.121 -22.885 -3.333 24.511 hybrid contribution 0.204 0.712 0.599 0.953 sum -7.917 -22.172 -2.734 23.702 Atomic orbital electron populations 1.22539 0.94917 1.04561 1.02907 1.22182 0.95123 0.81616 1.05019 1.47794 1.67489 1.14409 1.04450 1.17876 0.81716 0.86622 0.83111 1.91748 1.37474 1.17282 1.84751 1.20676 1.03841 0.90412 0.95007 1.20332 1.04498 0.99968 0.90030 1.22877 1.12203 1.03022 0.98810 1.83918 1.57107 1.23644 0.99002 1.25698 1.04458 1.00597 0.99748 1.19202 1.04247 1.00333 0.91382 1.19033 1.04628 0.98548 0.84431 1.43505 1.44937 1.20387 1.05986 0.70929 1.22330 0.93868 0.93752 0.85566 0.83896 1.23231 0.98317 0.96008 1.00811 1.20730 0.84219 0.92458 0.95026 1.44269 1.04890 1.22446 1.58807 1.19056 0.89322 0.99782 1.23207 0.92021 1.25211 0.97418 1.00176 1.03083 1.70193 1.15699 1.23986 1.50408 0.85315 0.79141 0.78947 0.77986 1.19629 1.23313 1.22194 1.22006 0.95689 0.87490 0.95203 0.90518 0.94183 0.87367 0.90577 0.85919 0.86301 0.77129 0.80481 0.89364 0.91329 0.97446 0.99576 0.95801 0.95722 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.93 71.98 0.64 -2.05 16 2 C 0.08 1.45 5.62 86.38 0.49 1.93 16 3 N -0.61 -18.14 2.56 -795.03 -2.03 -20.18 16 4 C 0.52 21.32 7.05 86.38 0.61 21.93 16 5 O -0.45 -23.76 8.89 -4.44 -0.04 -23.80 16 6 C 0.02 0.60 6.56 40.14 0.26 0.86 16 7 C -0.12 -4.73 10.61 22.68 0.24 -4.49 16 8 C -0.25 -8.14 7.26 22.86 0.17 -7.97 16 9 S 0.10 2.57 23.31 -56.49 -1.32 1.25 16 10 C -0.17 -2.75 11.13 66.64 0.74 -2.00 16 11 C -0.12 -2.10 10.16 21.49 0.22 -1.88 16 12 C 0.05 1.39 7.67 38.41 0.29 1.69 16 13 N -0.53 -14.00 4.34 -177.13 -0.77 -14.77 16 14 H 0.44 8.30 3.33 -92.71 -0.31 7.99 16 15 C 0.15 4.56 3.80 46.39 0.18 4.74 16 16 H 0.14 2.84 7.84 -2.39 -0.02 2.82 16 17 C -0.14 -5.21 6.53 31.78 0.21 -5.00 16 18 C 0.20 10.60 4.22 86.73 0.37 10.97 16 19 N -0.58 -31.36 1.73 -691.97 -1.20 -32.56 16 20 C -0.18 -11.21 8.68 84.03 0.73 -10.48 16 21 H 0.06 3.73 7.83 -2.91 -0.02 3.70 16 22 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 23 N -0.95 -63.09 10.31 21.65 0.22 -62.87 16 24 Si 0.95 51.38 29.55 68.60 2.03 53.41 16 25 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.30 -16.75 7.11 99.48 0.71 -16.04 16 27 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 28 C 0.12 5.04 6.14 86.86 0.53 5.57 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.77 6.47 -2.39 -0.02 0.76 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.34 5.22 -2.39 -0.01 1.33 16 33 H 0.12 1.33 7.88 -2.39 -0.02 1.31 16 34 H 0.12 5.44 8.06 -2.91 -0.02 5.42 16 35 H 0.21 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.01 0.46 5.94 -2.39 -0.01 0.45 16 40 H -0.01 -0.84 7.51 -2.39 -0.02 -0.86 16 41 H 0.23 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -87.26 345.21 3.77 -83.49 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.73 Total: 5.97 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.14 Total: 10.04 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -3.78 Total: -130.38 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.03 Total: 53.41 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.25 kcal Total: -87.26 3.77 -83.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034007561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.379 kcal (2) G-P(sol) polarization free energy of solvation -87.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds