Wall clock time and date at job start Tue Mar 31 2020 19:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47006 * 2 1 4 4 C 1.34775 * 120.00426 * 277.21770 * 3 2 1 5 5 O 1.21731 * 120.00084 * 178.87532 * 4 3 2 6 6 C 1.46452 * 119.99726 * 358.87412 * 4 3 2 7 7 C 1.37465 * 125.80683 * 190.33906 * 6 4 3 8 8 C 1.40650 * 107.56098 * 179.97438 * 7 6 4 9 9 S 1.76029 * 142.39867 * 179.97438 * 8 7 6 10 10 C 1.75591 * 91.30820 * 179.97438 * 9 8 7 11 11 C 1.32767 * 110.47579 * 0.02562 * 10 9 8 12 12 C 1.38245 * 108.03367 * 359.97438 * 8 7 6 13 13 N 1.37924 * 125.80755 * 10.02586 * 6 4 3 14 14 H 0.96996 * 125.68298 * 0.02562 * 13 6 4 15 15 C 1.46503 * 119.99781 * 97.22184 * 3 2 1 16 16 H 1.09005 * 110.91428 * 2.44179 * 15 3 2 17 17 C 1.55149 * 111.00826 * 126.34994 * 15 3 2 18 18 C 1.54317 * 102.94691 * 153.57549 * 17 15 3 19 19 N 1.47024 * 107.26898 * 337.80789 * 18 17 15 20 20 C 1.36936 * 125.65095 * 178.90687 * 19 18 17 21 21 H 1.08002 * 120.00161 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99734 * 0.02562 * 20 19 18 23 23 N 1.31613 * 120.00226 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47399 * 60.00290 * 24 22 20 26 26 H 1.48501 * 109.47156 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47170 * 300.00042 * 24 22 20 28 28 C 1.47429 * 108.70407 * 358.93652 * 19 18 17 29 29 H 1.09007 * 109.47297 * 59.99628 * 1 2 3 30 30 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47008 * 299.99798 * 1 2 3 32 32 H 1.09004 * 109.47062 * 240.00708 * 2 1 3 33 33 H 1.08999 * 109.47580 * 120.00288 * 2 1 3 34 34 H 1.08005 * 126.21738 * 0.02562 * 7 6 4 35 35 H 1.08004 * 124.76097 * 180.02562 * 10 9 8 36 36 H 1.08002 * 122.16063 * 180.02562 * 11 10 9 37 37 H 1.09003 * 110.72395 * 35.20735 * 17 15 3 38 38 H 1.09002 * 110.71801 * 271.94058 * 17 15 3 39 39 H 1.08997 * 109.88799 * 218.39280 * 18 17 15 40 40 H 1.09003 * 109.88444 * 97.22059 * 18 17 15 41 41 H 0.96994 * 120.00254 * 180.02562 * 23 22 20 42 42 H 1.09004 * 110.36246 * 142.96764 * 28 19 18 43 43 H 1.08999 * 110.36908 * 265.29362 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1047 2.0655 -1.1579 5 8 2.4910 3.2199 -1.1553 6 6 1.7338 1.4202 -2.4192 7 6 1.9601 1.9248 -3.6777 8 6 1.4524 0.9967 -4.6046 9 16 1.2568 0.7144 -6.3311 10 6 0.4680 -0.8254 -6.0308 11 6 0.3844 -1.0578 -4.7263 12 6 0.9214 -0.0666 -3.8985 13 7 1.1034 0.2001 -2.5465 14 1 0.8308 -0.3750 -1.8146 15 6 2.4128 2.0187 1.2587 16 1 2.3248 1.3216 2.0922 17 6 3.8506 2.5939 1.1642 18 6 3.8328 3.7406 2.1967 19 7 2.4286 4.1295 2.3929 20 6 1.9815 5.1007 3.2484 21 1 0.9248 5.3121 3.3206 22 6 2.8864 5.8136 4.0230 23 7 4.1742 5.5563 3.9347 24 14 2.2765 7.1379 5.1906 25 1 1.3515 6.5348 6.1835 26 1 3.4327 7.7464 5.8964 27 1 1.5603 8.1859 4.4198 28 6 1.5815 3.3002 1.5165 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.4411 2.8630 -3.9121 35 1 0.1022 -1.4901 -6.7995 36 1 -0.0684 -1.9547 -4.3300 37 1 4.0470 2.9789 0.1635 38 1 4.5869 1.8387 1.4392 39 1 4.4030 4.5890 1.8183 40 1 4.2575 3.3969 3.1399 41 1 4.8064 6.0542 4.4761 42 1 0.6462 3.0512 2.0180 43 1 1.3836 3.8190 0.5785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034007562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:19 Heat of formation + Delta-G solvation = 105.494320 kcal Electronic energy + Delta-G solvation = -26620.708442 eV Core-core repulsion = 22988.893635 eV Total energy + Delta-G solvation = -3631.814808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.78881 -39.70602 -36.83757 -36.24608 -35.17443 -32.54137 -31.31510 -30.27330 -29.18913 -28.46652 -26.94608 -24.62402 -24.01213 -23.30663 -22.30956 -21.14393 -20.20732 -20.03691 -19.26773 -17.83358 -16.89616 -16.74411 -16.09005 -15.50047 -15.40349 -14.82302 -14.56025 -14.40996 -14.28974 -14.10107 -13.83086 -13.35764 -13.21911 -13.04544 -12.78658 -12.33684 -12.21231 -12.09476 -12.05465 -11.88456 -11.72431 -11.41376 -11.02895 -10.87750 -10.82879 -10.70090 -10.40972 -10.08129 -9.93597 -9.87723 -9.62135 -9.30524 -8.64476 -8.44314 -8.22905 -7.83503 -6.72841 -5.63497 -2.96482 0.59612 1.35345 1.85294 1.88676 2.55619 2.65141 3.00887 3.34044 3.45111 3.49321 3.50709 4.31726 4.45631 4.54836 4.56975 4.71601 4.78226 4.93215 5.11791 5.22685 5.31664 5.34687 5.43917 5.46795 5.55310 5.60933 5.75702 5.78022 5.79927 5.85681 5.86689 6.13637 6.30456 6.47190 6.48973 6.58688 6.67045 6.74560 7.09541 7.14384 7.44689 7.62982 7.74498 7.90446 8.23119 8.33876 9.29464 9.89711 10.56425 11.48144 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.002658 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.532083 B =10533.097872 C =10935.024314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.084 3.916 3 N -0.599 5.599 4 C 0.579 3.421 5 O -0.493 6.493 6 C 0.018 3.982 7 C -0.078 4.078 8 C -0.215 4.215 9 S 0.126 5.874 10 C -0.193 4.193 11 C -0.113 4.113 12 C 0.050 3.950 13 N -0.550 5.550 14 H 0.427 0.573 15 C 0.131 3.869 16 H 0.094 0.906 17 C -0.158 4.158 18 C 0.186 3.814 19 N -0.601 5.601 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.129 3.871 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -19.097 -17.521 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.040 4.040 3 N -0.332 5.332 4 C 0.367 3.633 5 O -0.367 6.367 6 C -0.097 4.097 7 C -0.108 4.108 8 C -0.335 4.335 9 S 0.386 5.614 10 C -0.329 4.329 11 C -0.146 4.146 12 C -0.068 4.068 13 N -0.164 5.164 14 H 0.277 0.723 15 C 0.028 3.972 16 H 0.112 0.888 17 C -0.197 4.197 18 C 0.060 3.940 19 N -0.328 5.328 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.002 3.998 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.574 -17.621 -18.447 26.344 hybrid contribution -0.878 -0.557 2.251 2.480 sum -7.452 -18.177 -16.196 25.461 Atomic orbital electron populations 1.22586 0.95703 1.02917 1.04412 1.21976 0.94501 0.83875 1.03682 1.47892 1.64855 1.13024 1.07467 1.16986 0.78960 0.85837 0.81553 1.90940 1.44909 1.15334 1.85489 1.20543 1.05943 0.87796 0.95405 1.20432 1.03018 0.99518 0.87835 1.22701 1.12350 1.01175 0.97318 1.83924 1.61097 1.16181 1.00239 1.25209 1.07180 1.01549 0.98962 1.18869 1.04588 0.99409 0.91766 1.18485 1.06363 0.97545 0.84388 1.43676 1.49195 1.17829 1.05719 0.72254 1.22517 0.96931 0.95138 0.82611 0.88788 1.23315 0.94027 0.99502 1.02851 1.21058 0.86131 0.92546 0.94220 1.44314 1.01657 1.40784 1.46056 1.18995 0.92346 1.09930 1.14086 0.90612 1.24791 0.95452 0.99985 1.00286 1.69953 1.00246 1.43460 1.43343 0.86194 0.77248 0.81652 0.80632 1.21267 1.21620 1.21199 1.21822 0.93019 0.89925 0.95013 0.91794 0.90811 0.90099 0.90573 0.88595 0.82579 0.81175 0.84338 0.90061 0.92622 0.93808 0.93748 0.93760 0.94952 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 8.85 37.16 0.33 -1.29 16 2 C 0.08 0.79 5.67 -4.04 -0.02 0.77 16 3 N -0.60 -8.65 2.58 -165.28 -0.43 -9.08 16 4 C 0.58 9.51 6.85 -12.95 -0.09 9.42 16 5 O -0.49 -10.17 12.91 5.16 0.07 -10.10 16 6 C 0.02 0.25 6.45 -82.10 -0.53 -0.28 16 7 C -0.08 -1.07 10.62 -38.95 -0.41 -1.48 16 8 C -0.22 -2.63 7.26 -38.67 -0.28 -2.91 16 9 S 0.13 1.19 23.31 -107.50 -2.51 -1.32 16 10 C -0.19 -1.45 11.13 28.86 0.32 -1.13 16 11 C -0.11 -0.94 10.16 -40.85 -0.42 -1.35 16 12 C 0.05 0.55 7.67 -84.00 -0.64 -0.09 16 13 N -0.55 -5.94 4.28 -7.34 -0.03 -5.97 16 14 H 0.43 3.58 3.41 -40.82 -0.14 3.44 16 15 C 0.13 2.33 3.55 -65.78 -0.23 2.10 16 16 H 0.09 1.52 7.78 -51.93 -0.40 1.12 16 17 C -0.16 -3.20 6.28 -24.90 -0.16 -3.35 16 18 C 0.19 4.75 5.37 -3.07 -0.02 4.74 16 19 N -0.60 -16.14 3.39 -170.07 -0.58 -16.72 16 20 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -27.92 10.31 55.49 0.57 -27.35 16 24 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.13 2.86 6.62 -2.52 -0.02 2.84 16 29 H 0.06 0.60 6.39 -51.93 -0.33 0.26 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.63 5.15 -51.93 -0.27 0.36 16 33 H 0.10 0.77 7.80 -51.93 -0.41 0.36 16 34 H 0.16 2.11 8.06 -52.48 -0.42 1.68 16 35 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.08 1.75 5.74 -51.93 -0.30 1.45 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.04 1.27 7.51 -51.93 -0.39 0.88 16 40 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.96 6.03 -51.93 -0.31 0.65 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -34.54 349.97 -10.51 -45.05 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.44 Total: 1.58 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.42 Total: 0.94 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.46 Total: -59.12 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.54 -10.51 -45.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034007562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.541 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds