Wall clock time and date at job start Tue Mar 31 2020 19:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47006 * 2 1 4 4 C 1.34775 * 120.00426 * 277.21770 * 3 2 1 5 5 O 1.21731 * 120.00084 * 178.87532 * 4 3 2 6 6 C 1.46452 * 119.99726 * 358.87412 * 4 3 2 7 7 C 1.37465 * 125.80683 * 190.33906 * 6 4 3 8 8 C 1.40650 * 107.56098 * 179.97438 * 7 6 4 9 9 S 1.76029 * 142.39867 * 179.97438 * 8 7 6 10 10 C 1.75591 * 91.30820 * 179.97438 * 9 8 7 11 11 C 1.32767 * 110.47579 * 0.02562 * 10 9 8 12 12 C 1.38245 * 108.03367 * 359.97438 * 8 7 6 13 13 N 1.37924 * 125.80755 * 10.02586 * 6 4 3 14 14 H 0.96996 * 125.68298 * 0.02562 * 13 6 4 15 15 C 1.46503 * 119.99781 * 97.22184 * 3 2 1 16 16 H 1.09005 * 110.91428 * 2.44179 * 15 3 2 17 17 C 1.55149 * 111.00826 * 126.34994 * 15 3 2 18 18 C 1.54317 * 102.94691 * 153.57549 * 17 15 3 19 19 N 1.47024 * 107.26898 * 337.80789 * 18 17 15 20 20 C 1.36936 * 125.65095 * 178.90687 * 19 18 17 21 21 H 1.08002 * 120.00161 * 180.02562 * 20 19 18 22 22 C 1.38818 * 119.99734 * 0.02562 * 20 19 18 23 23 N 1.31613 * 120.00226 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47399 * 60.00290 * 24 22 20 26 26 H 1.48501 * 109.47156 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47170 * 300.00042 * 24 22 20 28 28 C 1.47429 * 108.70407 * 358.93652 * 19 18 17 29 29 H 1.09007 * 109.47297 * 59.99628 * 1 2 3 30 30 H 1.09002 * 109.47203 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47008 * 299.99798 * 1 2 3 32 32 H 1.09004 * 109.47062 * 240.00708 * 2 1 3 33 33 H 1.08999 * 109.47580 * 120.00288 * 2 1 3 34 34 H 1.08005 * 126.21738 * 0.02562 * 7 6 4 35 35 H 1.08004 * 124.76097 * 180.02562 * 10 9 8 36 36 H 1.08002 * 122.16063 * 180.02562 * 11 10 9 37 37 H 1.09003 * 110.72395 * 35.20735 * 17 15 3 38 38 H 1.09002 * 110.71801 * 271.94058 * 17 15 3 39 39 H 1.08997 * 109.88799 * 218.39280 * 18 17 15 40 40 H 1.09003 * 109.88444 * 97.22059 * 18 17 15 41 41 H 0.96994 * 120.00254 * 180.02562 * 23 22 20 42 42 H 1.09004 * 110.36246 * 142.96764 * 28 19 18 43 43 H 1.08999 * 110.36908 * 265.29362 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1047 2.0655 -1.1579 5 8 2.4910 3.2199 -1.1553 6 6 1.7338 1.4202 -2.4192 7 6 1.9601 1.9248 -3.6777 8 6 1.4524 0.9967 -4.6046 9 16 1.2568 0.7144 -6.3311 10 6 0.4680 -0.8254 -6.0308 11 6 0.3844 -1.0578 -4.7263 12 6 0.9214 -0.0666 -3.8985 13 7 1.1034 0.2001 -2.5465 14 1 0.8308 -0.3750 -1.8146 15 6 2.4128 2.0187 1.2587 16 1 2.3248 1.3216 2.0922 17 6 3.8506 2.5939 1.1642 18 6 3.8328 3.7406 2.1967 19 7 2.4286 4.1295 2.3929 20 6 1.9815 5.1007 3.2484 21 1 0.9248 5.3121 3.3206 22 6 2.8864 5.8136 4.0230 23 7 4.1742 5.5563 3.9347 24 14 2.2765 7.1379 5.1906 25 1 1.3515 6.5348 6.1835 26 1 3.4327 7.7464 5.8964 27 1 1.5603 8.1859 4.4198 28 6 1.5815 3.3002 1.5165 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.4411 2.8630 -3.9121 35 1 0.1022 -1.4901 -6.7995 36 1 -0.0684 -1.9547 -4.3300 37 1 4.0470 2.9789 0.1635 38 1 4.5869 1.8387 1.4392 39 1 4.4030 4.5890 1.8183 40 1 4.2575 3.3969 3.1399 41 1 4.8064 6.0542 4.4761 42 1 0.6462 3.0512 2.0180 43 1 1.3836 3.8190 0.5785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034007562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:18 Heat of formation + Delta-G solvation = 83.852670 kcal Electronic energy + Delta-G solvation = -26621.646895 eV Core-core repulsion = 22988.893635 eV Total energy + Delta-G solvation = -3632.753260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.75391 -40.95056 -38.51864 -37.36317 -36.09666 -34.38736 -32.55290 -31.41244 -30.77476 -29.78780 -28.45387 -26.49409 -25.06733 -24.06510 -23.43541 -22.20974 -22.06850 -21.38807 -20.21891 -19.10543 -18.64773 -17.84937 -17.18958 -16.73433 -16.52007 -16.51057 -16.03361 -15.55308 -15.39353 -15.19974 -14.83541 -14.82467 -14.37881 -14.21202 -13.99159 -13.81101 -13.68709 -13.52859 -13.07811 -12.91626 -12.80595 -12.73183 -12.66255 -12.38811 -12.16582 -12.11739 -12.08335 -11.84320 -11.71834 -11.60651 -10.82851 -10.75168 -10.70298 -9.86420 -9.08887 -8.89925 -8.63545 -7.85863 -5.22444 -0.23450 0.60277 0.85790 1.19273 1.43176 1.48132 1.54015 1.60980 1.80536 1.98903 2.18457 2.49336 3.29589 3.36206 3.66252 3.71457 3.83281 3.84559 3.98111 4.00965 4.11409 4.18647 4.29067 4.38773 4.49473 4.54730 4.66606 4.70267 4.74832 4.77543 4.88434 4.95435 4.99427 5.06592 5.11030 5.20603 5.40649 5.42639 5.53173 5.61768 5.64891 5.72071 6.17094 6.23700 6.35565 7.00128 7.07755 7.74338 8.40110 9.24499 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.002658 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.532083 B =10533.097872 C =10935.024314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 N -0.594 5.594 4 C 0.577 3.423 5 O -0.551 6.551 6 C -0.001 4.001 7 C -0.092 4.092 8 C -0.252 4.252 9 S 0.120 5.880 10 C -0.167 4.167 11 C -0.125 4.125 12 C 0.064 3.936 13 N -0.535 5.535 14 H 0.438 0.562 15 C 0.153 3.847 16 H 0.124 0.876 17 C -0.145 4.145 18 C 0.196 3.804 19 N -0.622 5.622 20 C -0.246 4.246 21 H 0.081 0.919 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.983 3.017 25 H -0.271 1.271 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.127 3.873 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.209 0.791 36 H 0.175 0.825 37 H 0.065 0.935 38 H 0.085 0.915 39 H -0.005 1.005 40 H 0.022 0.978 41 H 0.248 0.752 42 H 0.044 0.956 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.403 -22.959 -18.345 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.046 4.046 3 N -0.325 5.325 4 C 0.367 3.633 5 O -0.429 6.429 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.371 4.371 9 S 0.379 5.621 10 C -0.303 4.303 11 C -0.158 4.158 12 C -0.056 4.056 13 N -0.150 5.150 14 H 0.291 0.709 15 C 0.049 3.951 16 H 0.142 0.858 17 C -0.184 4.184 18 C 0.071 3.929 19 N -0.349 5.349 20 C -0.375 4.375 21 H 0.098 0.902 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.196 1.196 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.001 3.999 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.226 0.774 36 H 0.192 0.808 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.013 0.987 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -8.803 -21.556 -19.268 30.223 hybrid contribution -0.257 0.592 2.317 2.405 sum -9.060 -20.964 -16.951 28.442 Atomic orbital electron populations 1.22566 0.94369 1.05135 1.03108 1.22381 0.95531 0.80868 1.05796 1.47873 1.64276 1.14798 1.05545 1.17352 0.77961 0.85277 0.82737 1.90910 1.47634 1.17891 1.86429 1.19993 1.08237 0.89410 0.93946 1.20487 1.03270 0.99620 0.88927 1.22923 1.13657 1.01561 0.99001 1.83989 1.61589 1.17995 0.98505 1.25742 1.04662 1.00168 0.99706 1.19211 1.05021 1.00043 0.91496 1.19003 1.04851 0.97560 0.84185 1.43511 1.48464 1.16751 1.06298 0.70864 1.22161 0.93792 0.94104 0.85058 0.85798 1.23102 0.96883 0.98293 1.00102 1.20764 0.85243 0.92628 0.94309 1.44624 1.02803 1.41247 1.46205 1.19417 0.92789 1.10815 1.14448 0.90154 1.25717 0.95646 1.02404 1.02234 1.70191 1.01354 1.44425 1.44105 0.85090 0.76751 0.78625 0.78465 1.19607 1.21790 1.20754 1.21896 0.93701 0.91239 0.93081 0.93160 0.86758 0.91384 0.88926 0.85994 0.84010 0.77366 0.80783 0.91664 0.89620 0.98722 0.96030 0.94306 0.93782 0.96594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 8.85 71.98 0.64 -1.88 16 2 C 0.08 1.20 5.67 86.38 0.49 1.69 16 3 N -0.59 -16.58 2.58 -795.02 -2.05 -18.64 16 4 C 0.58 19.49 6.85 86.38 0.59 20.08 16 5 O -0.55 -24.36 12.91 -4.45 -0.06 -24.42 16 6 C 0.00 -0.04 6.45 40.14 0.26 0.22 16 7 C -0.09 -2.66 10.62 22.68 0.24 -2.42 16 8 C -0.25 -5.99 7.26 22.86 0.17 -5.83 16 9 S 0.12 2.06 23.31 -56.49 -1.32 0.74 16 10 C -0.17 -1.78 11.13 66.64 0.74 -1.04 16 11 C -0.13 -1.52 10.16 21.49 0.22 -1.31 16 12 C 0.06 1.24 7.67 38.40 0.29 1.54 16 13 N -0.53 -10.47 4.28 -177.14 -0.76 -11.23 16 14 H 0.44 5.94 3.41 -92.71 -0.32 5.62 16 15 C 0.15 5.36 3.55 46.38 0.16 5.53 16 16 H 0.12 3.67 7.78 -2.38 -0.02 3.65 16 17 C -0.14 -6.00 6.28 31.78 0.20 -5.80 16 18 C 0.20 10.59 5.37 86.73 0.47 11.05 16 19 N -0.62 -34.71 3.39 -691.96 -2.35 -37.06 16 20 C -0.25 -14.68 10.28 84.04 0.86 -13.81 16 21 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.95 -60.09 10.31 21.65 0.22 -59.87 16 24 Si 0.98 47.71 29.55 68.60 2.03 49.73 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 C 0.13 5.76 6.62 86.86 0.58 6.33 16 29 H 0.05 0.81 6.39 -2.38 -0.02 0.80 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.20 5.15 -2.38 -0.01 1.19 16 33 H 0.12 1.37 7.80 -2.39 -0.02 1.35 16 34 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.21 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.06 2.95 5.74 -2.39 -0.01 2.94 16 38 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 39 H -0.01 -0.35 7.51 -2.39 -0.02 -0.36 16 40 H 0.02 1.24 7.38 -2.39 -0.02 1.22 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.02 0.82 6.03 -2.39 -0.01 0.81 16 Total: -1.00 -82.10 349.97 2.83 -79.28 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.74 Total: 10.67 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.37 Total: 10.79 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -4.93 Total: -126.80 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.73 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -82.10 2.83 -79.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034007562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.129 kcal (2) G-P(sol) polarization free energy of solvation -82.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds