Wall clock time and date at job start Tue Mar 31 2020 19:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47108 * 2 1 4 4 C 1.34772 * 120.00157 * 273.08562 * 3 2 1 5 5 O 1.21731 * 120.00051 * 4.09012 * 4 3 2 6 6 C 1.46409 * 120.00404 * 184.08692 * 4 3 2 7 7 C 1.35768 * 124.96267 * 173.22887 * 6 4 3 8 8 C 1.38874 * 115.18786 * 179.82765 * 7 6 4 9 9 N 1.39739 * 139.91727 * 180.09251 * 8 7 6 10 10 H 0.97008 * 125.63486 * 0.32270 * 9 8 7 11 11 C 1.36219 * 108.73853 * 180.34548 * 9 8 7 12 12 C 1.34512 * 109.29028 * 359.97438 * 11 9 8 13 13 C 1.38245 * 113.39149 * 0.45003 * 8 7 6 14 14 S 1.75624 * 124.95681 * 353.52902 * 6 4 3 15 15 C 1.46500 * 119.99857 * 93.09365 * 3 2 1 16 16 H 1.09004 * 110.63747 * 228.34530 * 15 3 2 17 17 C 1.55152 * 110.72460 * 105.00906 * 15 3 2 18 18 C 1.54914 * 101.57974 * 277.13677 * 17 15 3 19 19 N 1.47416 * 104.83255 * 322.98911 * 18 17 15 20 20 C 1.36939 * 125.64741 * 204.16648 * 19 18 17 21 21 H 1.08002 * 119.99774 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00135 * 359.95497 * 20 19 18 23 23 N 1.31616 * 119.99963 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99864 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47397 * 60.00154 * 24 22 20 26 26 H 1.48506 * 109.47030 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46973 * 299.99606 * 24 22 20 28 28 C 1.47024 * 108.70500 * 24.12793 * 19 18 17 29 29 H 1.09003 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47075 * 299.99896 * 1 2 3 31 31 H 1.09001 * 109.47301 * 59.99547 * 1 2 3 32 32 H 1.09005 * 109.47337 * 119.99702 * 2 1 3 33 33 H 1.08996 * 109.47255 * 239.99821 * 2 1 3 34 34 H 1.07998 * 122.40983 * 359.97438 * 7 6 4 35 35 H 1.07993 * 125.35086 * 180.02562 * 11 9 8 36 36 H 1.08001 * 126.07074 * 180.02562 * 12 11 9 37 37 H 1.09000 * 111.00546 * 35.20711 * 17 15 3 38 38 H 1.08997 * 111.00947 * 159.06663 * 17 15 3 39 39 H 1.08998 * 110.36359 * 204.14657 * 18 17 15 40 40 H 1.09003 * 110.45760 * 81.87707 * 18 17 15 41 41 H 0.97000 * 120.00240 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.88202 * 239.52049 * 28 19 18 43 43 H 1.09001 * 109.88508 * 118.35670 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1837 2.0375 -1.1654 5 8 1.8574 1.5098 -2.2128 6 6 2.7558 3.3852 -1.1720 7 6 3.0873 4.0843 -2.2876 8 6 3.6127 5.3491 -2.0582 9 7 4.0986 6.4500 -2.7686 10 1 4.1535 6.5199 -3.7346 11 6 4.4830 7.4088 -1.8806 12 6 4.2632 6.9688 -0.6286 13 6 3.7130 5.6667 -0.7165 14 16 3.1203 4.3306 0.2625 15 6 2.3270 2.0490 1.2669 16 1 1.8689 3.0375 1.3018 17 6 3.8611 2.1430 1.4784 18 6 4.1810 0.7437 2.0613 19 7 3.0306 0.4231 2.9257 20 6 3.0455 -0.4452 3.9845 21 1 2.1460 -0.6123 4.5585 22 6 4.2165 -1.1109 4.3198 23 7 5.3127 -0.9072 3.6203 24 14 4.2365 -2.2959 5.7636 25 1 3.2599 -3.3880 5.5214 26 1 5.5972 -2.8721 5.9123 27 1 3.8688 -1.5693 7.0055 28 6 1.8650 1.1906 2.4633 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.9500 3.6863 -3.2822 35 1 4.8980 8.3712 -2.1409 36 1 4.4698 7.5119 0.2818 37 1 4.3774 2.2988 0.5312 38 1 4.1099 2.9292 2.1912 39 1 5.0987 0.7781 2.6484 40 1 4.2707 0.0091 1.2611 41 1 6.1311 -1.3721 3.8548 42 1 1.5040 1.8353 3.2647 43 1 1.0743 0.5099 2.1477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034030421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:25 Heat of formation + Delta-G solvation = 86.229327 kcal Electronic energy + Delta-G solvation = -27005.525903 eV Core-core repulsion = 23372.875703 eV Total energy + Delta-G solvation = -3632.650200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13394 -40.04459 -37.62974 -35.06314 -34.50034 -32.40150 -31.17225 -30.80635 -28.87198 -28.00978 -27.45182 -24.72817 -24.26769 -22.50208 -21.49127 -20.92080 -20.32416 -20.23955 -18.37903 -18.09403 -17.03506 -16.89654 -15.94629 -15.36140 -15.16281 -14.89982 -14.64329 -14.47680 -13.91837 -13.82102 -13.57030 -13.44481 -13.20535 -12.61107 -12.53215 -12.32421 -12.21855 -11.89309 -11.79014 -11.60687 -11.33921 -11.20309 -10.90367 -10.83283 -10.57058 -10.30775 -10.23287 -10.10124 -10.04889 -9.73488 -9.67943 -9.52353 -8.69485 -8.36010 -8.01432 -7.43685 -6.89269 -5.68752 -3.12045 0.64881 1.64285 2.17286 2.43250 2.67571 2.89882 3.30681 3.38952 3.43175 3.44129 3.44729 4.45102 4.62820 4.84407 4.98638 5.04822 5.22226 5.25816 5.43429 5.46657 5.51141 5.55544 5.61856 5.67350 5.77557 5.81094 5.93310 6.02235 6.16093 6.21629 6.25914 6.33843 6.42890 6.51177 6.53107 6.61141 6.63862 6.73937 6.87784 7.36034 7.48229 7.57445 7.67363 7.81878 8.30980 8.36644 9.16857 9.77237 10.40665 11.34346 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.003734 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.119248 B = 7496.628940 C = 8589.079243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.584 5.584 4 C 0.590 3.410 5 O -0.542 6.542 6 C -0.240 4.240 7 C -0.039 4.039 8 C 0.020 3.980 9 N -0.563 5.563 10 H 0.416 0.584 11 C 0.050 3.950 12 C -0.173 4.173 13 C -0.224 4.224 14 S 0.222 5.778 15 C 0.109 3.891 16 H 0.085 0.915 17 C -0.162 4.162 18 C 0.158 3.842 19 N -0.600 5.600 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.130 3.870 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.014 0.986 41 H 0.253 0.747 42 H 0.037 0.963 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 15.065 -10.278 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.315 5.315 4 C 0.378 3.622 5 O -0.422 6.422 6 C -0.360 4.360 7 C -0.076 4.076 8 C -0.093 4.093 9 N -0.165 5.165 10 H 0.253 0.747 11 C -0.083 4.083 12 C -0.202 4.202 13 C -0.345 4.345 14 S 0.489 5.511 15 C 0.003 3.997 16 H 0.102 0.898 17 C -0.203 4.203 18 C 0.033 3.967 19 N -0.327 5.327 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.004 3.996 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.191 0.809 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.788 14.381 -9.298 17.539 hybrid contribution 0.294 -0.104 -1.310 1.347 sum -3.494 14.277 -10.608 18.127 Atomic orbital electron populations 1.22163 0.96188 1.01993 1.01893 1.21586 0.93987 0.81440 1.04488 1.47785 1.64169 1.14447 1.05096 1.16840 0.77980 0.83601 0.83738 1.90783 1.51871 1.68271 1.31296 1.23805 1.14395 1.00439 0.97395 1.19103 0.98687 0.90285 0.99481 1.18010 1.09410 0.91620 0.90275 1.41887 1.53564 1.12613 1.08400 0.74736 1.21813 1.03183 0.94515 0.88809 1.20129 1.08975 0.94002 0.97107 1.24340 1.10142 1.02042 0.97946 1.85112 1.61711 1.01263 1.03009 1.22407 0.97995 0.94989 0.84336 0.89766 1.23680 0.93015 1.02241 1.01353 1.21953 0.94010 0.88050 0.92715 1.44499 1.05019 1.49430 1.33774 1.18994 0.96062 1.16042 1.04384 0.90427 1.24773 0.95757 1.00322 0.99394 1.69779 1.00517 1.45528 1.40884 0.86162 0.76691 0.80678 0.81978 1.21209 1.21614 1.21146 1.21620 0.92374 0.93664 0.91924 0.91784 0.92342 0.92661 0.87620 0.90614 0.83916 0.80943 0.83852 0.91120 0.90110 0.87375 0.96779 0.93592 0.94514 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.89 37.15 0.37 -2.05 16 2 C 0.11 1.85 5.31 -4.04 -0.02 1.83 16 3 N -0.58 -10.19 2.57 -165.65 -0.43 -10.62 16 4 C 0.59 10.57 7.41 -12.97 -0.10 10.47 16 5 O -0.54 -10.84 16.46 5.16 0.08 -10.76 16 6 C -0.24 -3.80 5.66 -37.18 -0.21 -4.01 16 7 C -0.04 -0.55 9.88 -40.23 -0.40 -0.95 16 8 C 0.02 0.26 7.67 -84.02 -0.64 -0.39 16 9 N -0.56 -5.31 6.21 -10.90 -0.07 -5.37 16 10 H 0.42 2.56 8.96 -40.82 -0.37 2.19 16 11 C 0.05 0.43 11.85 -16.92 -0.20 0.23 16 12 C -0.17 -1.90 10.85 -39.61 -0.43 -2.33 16 13 C -0.22 -3.05 7.31 -38.29 -0.28 -3.33 16 14 S 0.22 3.15 15.18 -107.50 -1.63 1.52 16 15 C 0.11 1.86 2.66 -66.10 -0.18 1.69 16 16 H 0.09 1.31 5.45 -28.34 -0.15 1.15 16 17 C -0.16 -2.98 4.45 -24.58 -0.11 -3.09 16 18 C 0.16 3.66 5.74 -2.53 -0.01 3.64 16 19 N -0.60 -14.26 2.99 -170.07 -0.51 -14.77 16 20 C -0.23 -5.96 10.27 -15.06 -0.15 -6.11 16 21 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -25.85 10.09 55.49 0.56 -25.29 16 24 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.13 2.51 6.01 -3.06 -0.02 2.49 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.83 6.90 -51.93 -0.36 0.48 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.11 2.05 5.84 -51.93 -0.30 1.75 16 33 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 34 H 0.14 1.91 8.01 -52.49 -0.42 1.49 16 35 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.07 1.28 6.37 -51.92 -0.33 0.95 16 38 H 0.08 1.41 7.68 -51.93 -0.40 1.01 16 39 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.83 4.47 -51.93 -0.23 0.60 16 LS Contribution 346.77 15.07 5.23 5.23 Total: -1.00 -31.57 346.77 -9.61 -41.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.34 Total: 4.70 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.48 Total: -2.18 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.44 Total: -56.05 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.63 Total: 1.52 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.57 -9.61 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034030421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.411 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds