Wall clock time and date at job start Tue Mar 31 2020 19:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47108 * 2 1 4 4 C 1.34772 * 120.00157 * 273.08562 * 3 2 1 5 5 O 1.21731 * 120.00051 * 4.09012 * 4 3 2 6 6 C 1.46409 * 120.00404 * 184.08692 * 4 3 2 7 7 C 1.35768 * 124.96267 * 173.22887 * 6 4 3 8 8 C 1.38874 * 115.18786 * 179.82765 * 7 6 4 9 9 N 1.39739 * 139.91727 * 180.09251 * 8 7 6 10 10 H 0.97008 * 125.63486 * 0.32270 * 9 8 7 11 11 C 1.36219 * 108.73853 * 180.34548 * 9 8 7 12 12 C 1.34512 * 109.29028 * 359.97438 * 11 9 8 13 13 C 1.38245 * 113.39149 * 0.45003 * 8 7 6 14 14 S 1.75624 * 124.95681 * 353.52902 * 6 4 3 15 15 C 1.46500 * 119.99857 * 93.09365 * 3 2 1 16 16 H 1.09004 * 110.63747 * 228.34530 * 15 3 2 17 17 C 1.55152 * 110.72460 * 105.00906 * 15 3 2 18 18 C 1.54914 * 101.57974 * 277.13677 * 17 15 3 19 19 N 1.47416 * 104.83255 * 322.98911 * 18 17 15 20 20 C 1.36939 * 125.64741 * 204.16648 * 19 18 17 21 21 H 1.08002 * 119.99774 * 179.97438 * 20 19 18 22 22 C 1.38812 * 120.00135 * 359.95497 * 20 19 18 23 23 N 1.31616 * 119.99963 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99864 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47397 * 60.00154 * 24 22 20 26 26 H 1.48506 * 109.47030 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46973 * 299.99606 * 24 22 20 28 28 C 1.47024 * 108.70500 * 24.12793 * 19 18 17 29 29 H 1.09003 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47075 * 299.99896 * 1 2 3 31 31 H 1.09001 * 109.47301 * 59.99547 * 1 2 3 32 32 H 1.09005 * 109.47337 * 119.99702 * 2 1 3 33 33 H 1.08996 * 109.47255 * 239.99821 * 2 1 3 34 34 H 1.07998 * 122.40983 * 359.97438 * 7 6 4 35 35 H 1.07993 * 125.35086 * 180.02562 * 11 9 8 36 36 H 1.08001 * 126.07074 * 180.02562 * 12 11 9 37 37 H 1.09000 * 111.00546 * 35.20711 * 17 15 3 38 38 H 1.08997 * 111.00947 * 159.06663 * 17 15 3 39 39 H 1.08998 * 110.36359 * 204.14657 * 18 17 15 40 40 H 1.09003 * 110.45760 * 81.87707 * 18 17 15 41 41 H 0.97000 * 120.00240 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.88202 * 239.52049 * 28 19 18 43 43 H 1.09001 * 109.88508 * 118.35670 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1837 2.0375 -1.1654 5 8 1.8574 1.5098 -2.2128 6 6 2.7558 3.3852 -1.1720 7 6 3.0873 4.0843 -2.2876 8 6 3.6127 5.3491 -2.0582 9 7 4.0986 6.4500 -2.7686 10 1 4.1535 6.5199 -3.7346 11 6 4.4830 7.4088 -1.8806 12 6 4.2632 6.9688 -0.6286 13 6 3.7130 5.6667 -0.7165 14 16 3.1203 4.3306 0.2625 15 6 2.3270 2.0490 1.2669 16 1 1.8689 3.0375 1.3018 17 6 3.8611 2.1430 1.4784 18 6 4.1810 0.7437 2.0613 19 7 3.0306 0.4231 2.9257 20 6 3.0455 -0.4452 3.9845 21 1 2.1460 -0.6123 4.5585 22 6 4.2165 -1.1109 4.3198 23 7 5.3127 -0.9072 3.6203 24 14 4.2365 -2.2959 5.7636 25 1 3.2599 -3.3880 5.5214 26 1 5.5972 -2.8721 5.9123 27 1 3.8688 -1.5693 7.0055 28 6 1.8650 1.1906 2.4633 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.9500 3.6863 -3.2822 35 1 4.8980 8.3712 -2.1409 36 1 4.4698 7.5119 0.2818 37 1 4.3774 2.2988 0.5312 38 1 4.1099 2.9292 2.1912 39 1 5.0987 0.7781 2.6484 40 1 4.2707 0.0091 1.2611 41 1 6.1311 -1.3721 3.8548 42 1 1.5040 1.8353 3.2647 43 1 1.0743 0.5099 2.1477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034030421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:24 Heat of formation + Delta-G solvation = 67.222638 kcal Electronic energy + Delta-G solvation = -27006.350095 eV Core-core repulsion = 23372.875703 eV Total energy + Delta-G solvation = -3633.474392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.01840 -41.46055 -39.17741 -36.32763 -35.92614 -34.11116 -32.67947 -31.70504 -30.55644 -29.27804 -28.87601 -26.51231 -25.50204 -23.71566 -22.79708 -22.14415 -21.85449 -21.36367 -19.46533 -19.40361 -18.85041 -18.15316 -17.32478 -16.86233 -16.46442 -16.35317 -15.94013 -15.73379 -15.37093 -15.01808 -14.91592 -14.74381 -14.29880 -14.05450 -13.89077 -13.70377 -13.49749 -13.45176 -13.01975 -12.98466 -12.86002 -12.69361 -12.53352 -12.38463 -12.03824 -12.00637 -11.90763 -11.73799 -11.54646 -11.39733 -11.09940 -10.68883 -10.52590 -9.77105 -9.01036 -8.85267 -8.43875 -7.71802 -5.16773 -0.43328 0.56568 1.12260 1.42414 1.51641 1.53640 1.59797 1.77909 1.81104 2.16347 2.28548 2.53559 3.37956 3.39937 3.59198 3.69100 3.94077 4.02934 4.09459 4.14077 4.24203 4.29610 4.34795 4.50682 4.61028 4.63255 4.63612 4.74461 4.88513 4.89406 4.97548 5.01353 5.06155 5.08911 5.14505 5.28484 5.47563 5.52961 5.62767 5.65081 5.83241 5.87738 6.28683 6.33592 6.69074 6.98980 7.14043 7.80870 8.44307 9.29274 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.003734 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.119248 B = 7496.628940 C = 8589.079243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.109 3.891 3 N -0.587 5.587 4 C 0.590 3.410 5 O -0.573 6.573 6 C -0.277 4.277 7 C -0.023 4.023 8 C -0.008 4.008 9 N -0.550 5.550 10 H 0.433 0.567 11 C 0.088 3.912 12 C -0.204 4.204 13 C -0.228 4.228 14 S 0.210 5.790 15 C 0.123 3.877 16 H 0.111 0.889 17 C -0.143 4.143 18 C 0.166 3.834 19 N -0.616 5.616 20 C -0.233 4.233 21 H 0.086 0.914 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.977 3.023 25 H -0.280 1.280 26 H -0.299 1.299 27 H -0.276 1.276 28 C 0.127 3.873 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.146 0.854 35 H 0.225 0.775 36 H 0.160 0.840 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.075 0.925 40 H -0.020 1.020 41 H 0.245 0.755 42 H 0.053 0.947 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 18.070 -10.712 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.318 5.318 4 C 0.380 3.620 5 O -0.455 6.455 6 C -0.397 4.397 7 C -0.061 4.061 8 C -0.120 4.120 9 N -0.153 5.153 10 H 0.273 0.727 11 C -0.047 4.047 12 C -0.233 4.233 13 C -0.350 4.350 14 S 0.477 5.523 15 C 0.017 3.983 16 H 0.128 0.872 17 C -0.183 4.183 18 C 0.040 3.960 19 N -0.342 5.342 20 C -0.362 4.362 21 H 0.104 0.896 22 C -0.255 4.255 23 N -0.598 5.598 24 Si 0.806 3.194 25 H -0.207 1.207 26 H -0.225 1.225 27 H -0.202 1.202 28 C 0.002 3.998 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.241 0.759 36 H 0.178 0.822 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.093 0.907 40 H -0.002 1.002 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.367 17.387 -9.747 20.406 hybrid contribution 0.523 -0.832 -1.304 1.633 sum -3.844 16.555 -11.050 20.272 Atomic orbital electron populations 1.22062 0.93879 1.03124 1.01994 1.21496 0.95799 0.81396 1.02633 1.47832 1.64270 1.14383 1.05308 1.17116 0.77415 0.84320 0.83178 1.90748 1.53386 1.69305 1.32088 1.23565 1.17340 1.00083 0.98697 1.19243 0.96927 0.90680 0.99225 1.17959 1.11028 0.92223 0.90830 1.42018 1.52141 1.11509 1.09588 0.72696 1.22651 0.99321 0.95175 0.87576 1.20546 1.10301 0.93308 0.99139 1.24579 1.09825 1.02719 0.97828 1.84761 1.62596 1.02051 1.02904 1.22319 0.96867 0.95703 0.83425 0.87249 1.23483 0.94201 0.99305 1.01336 1.21632 0.92988 0.90077 0.91276 1.44679 1.06610 1.49589 1.33355 1.19392 0.96198 1.15934 1.04680 0.89607 1.25547 0.95665 1.02347 1.01978 1.70040 1.00760 1.46551 1.42418 0.85177 0.76057 0.78796 0.79412 1.20659 1.22524 1.20184 1.21784 0.91119 0.93855 0.93081 0.90192 0.91610 0.92978 0.89973 0.91874 0.83664 0.75880 0.82241 0.90836 0.88828 0.90705 1.00169 0.94513 0.92944 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.89 71.98 0.71 -3.73 16 2 C 0.11 3.88 5.31 86.38 0.46 4.34 16 3 N -0.59 -20.87 2.57 -796.21 -2.05 -22.92 16 4 C 0.59 21.52 7.41 86.37 0.64 22.16 16 5 O -0.57 -23.53 16.46 -4.45 -0.07 -23.60 16 6 C -0.28 -8.76 5.66 23.83 0.13 -8.63 16 7 C -0.02 -0.66 9.88 21.85 0.22 -0.44 16 8 C -0.01 -0.20 7.67 38.03 0.29 0.09 16 9 N -0.55 -8.24 6.21 -188.39 -1.17 -9.41 16 10 H 0.43 3.57 8.96 -92.70 -0.83 2.74 16 11 C 0.09 1.05 11.85 83.16 0.99 2.04 16 12 C -0.20 -3.75 10.85 22.25 0.24 -3.51 16 13 C -0.23 -5.72 7.31 23.11 0.17 -5.55 16 14 S 0.21 5.78 15.18 -56.49 -0.86 4.92 16 15 C 0.12 4.18 2.66 46.18 0.12 4.30 16 16 H 0.11 3.26 5.45 -17.39 -0.09 3.17 16 17 C -0.14 -5.32 4.45 31.99 0.14 -5.18 16 18 C 0.17 8.03 5.74 86.86 0.50 8.53 16 19 N -0.62 -29.83 2.99 -691.98 -2.07 -31.90 16 20 C -0.23 -12.40 10.27 84.03 0.86 -11.54 16 21 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 23 N -0.95 -55.47 10.09 21.65 0.22 -55.25 16 24 Si 0.98 44.63 29.55 68.60 2.03 46.66 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 C 0.13 4.84 6.01 86.73 0.52 5.36 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.81 6.90 -2.38 -0.02 1.79 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 3.32 5.84 -2.38 -0.01 3.31 16 33 H 0.06 2.37 7.58 -2.39 -0.02 2.36 16 34 H 0.15 3.86 8.01 -2.91 -0.02 3.83 16 35 H 0.22 0.38 8.06 -2.91 -0.02 0.35 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.07 2.72 6.37 -2.39 -0.02 2.70 16 38 H 0.09 3.25 7.68 -2.39 -0.02 3.23 16 39 H 0.08 4.16 5.87 -2.39 -0.01 4.14 16 40 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 41 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 1.94 4.47 -2.39 -0.01 1.93 16 Total: -1.00 -71.38 346.77 2.64 -68.74 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.15 Total: 17.49 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.46 Total: 5.26 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -5.07 Total: -119.47 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.07 Total: -23.60 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -0.86 Total: 4.92 kcal Total: -71.38 2.64 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034030421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.965 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds