Wall clock time and date at job start Tue Mar 31 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47583 * 2 1 4 4 C 1.34780 * 119.99821 * 88.22069 * 3 2 1 5 5 O 1.21729 * 120.00051 * 174.41665 * 4 3 2 6 6 C 1.46412 * 119.99892 * 354.14906 * 4 3 2 7 7 C 1.35777 * 124.95667 * 172.69147 * 6 4 3 8 8 C 1.38880 * 115.18646 * 179.97438 * 7 6 4 9 9 N 1.39739 * 139.91834 * 179.97438 * 8 7 6 10 10 H 0.97006 * 125.63233 * 359.97438 * 9 8 7 11 11 C 1.36206 * 108.73561 * 179.97438 * 9 8 7 12 12 C 1.34508 * 109.29787 * 0.02562 * 11 9 8 13 13 C 1.38239 * 113.38857 * 359.97438 * 8 7 6 14 14 S 1.75622 * 124.96077 * 352.38083 * 6 4 3 15 15 C 1.46494 * 119.99982 * 268.22503 * 3 2 1 16 16 H 1.08995 * 110.88931 * 356.11835 * 15 3 2 17 17 C 1.55160 * 111.00368 * 119.99935 * 15 3 2 18 18 C 1.54326 * 102.94189 * 153.57160 * 17 15 3 19 19 N 1.47017 * 107.27352 * 337.80839 * 18 17 15 20 20 C 1.36939 * 125.64917 * 178.98381 * 19 18 17 21 21 H 1.07998 * 119.99711 * 179.97438 * 20 19 18 22 22 C 1.38808 * 120.00092 * 359.97256 * 20 19 18 23 23 N 1.31620 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00092 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46962 * 60.00612 * 24 22 20 26 26 H 1.48496 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47391 * 300.00392 * 24 22 20 28 28 C 1.47429 * 108.70014 * 358.93934 * 19 18 17 29 29 H 1.09001 * 109.47389 * 59.99415 * 1 2 3 30 30 H 1.08994 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46940 * 299.99910 * 1 2 3 32 32 H 1.09002 * 109.46732 * 239.99592 * 2 1 3 33 33 H 1.09003 * 109.46657 * 120.00488 * 2 1 3 34 34 H 1.07997 * 122.40959 * 359.93354 * 7 6 4 35 35 H 1.08003 * 125.35268 * 179.97438 * 11 9 8 36 36 H 1.07998 * 126.07714 * 180.02562 * 12 11 9 37 37 H 1.08991 * 110.72193 * 271.93810 * 17 15 3 38 38 H 1.08998 * 110.72222 * 35.21346 * 17 15 3 39 39 H 1.09000 * 109.87936 * 97.22516 * 18 17 15 40 40 H 1.09000 * 109.88122 * 218.38756 * 18 17 15 41 41 H 0.97002 * 119.99877 * 179.97438 * 23 22 20 42 42 H 1.08996 * 110.36301 * 265.28557 * 28 19 18 43 43 H 1.09005 * 110.36406 * 142.97345 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2089 2.0285 1.1667 5 8 2.7099 3.1379 1.1724 6 6 1.8079 1.3999 2.4267 7 6 2.0778 1.8930 3.6626 8 6 1.6002 1.1304 4.7205 9 7 1.5760 1.1366 6.1177 10 1 1.9715 1.8154 6.6867 11 6 0.9055 0.0321 6.5485 12 6 0.4984 -0.6838 5.4850 13 6 0.9270 -0.0075 4.3167 14 16 0.9009 -0.0981 2.5600 15 6 2.2997 2.0586 -1.2681 16 1 2.1607 1.3806 -2.1101 17 6 1.4229 3.3289 -1.4264 18 6 2.2711 4.2205 -2.3576 19 7 3.6656 3.7693 -2.2428 20 6 4.7320 4.2910 -2.9253 21 1 5.7220 3.8882 -2.7699 22 6 4.5406 5.3375 -3.8170 23 7 3.3342 5.8286 -4.0061 24 14 5.9954 6.0495 -4.7476 25 1 6.6241 4.9863 -5.5720 26 1 5.5285 7.1492 -5.6296 27 1 6.9901 6.5795 -3.7807 28 6 3.7260 2.6630 -1.2702 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.6252 2.8118 3.8123 35 1 0.7292 -0.2285 7.5817 36 1 -0.0572 -1.6094 5.5163 37 1 0.4685 3.0832 -1.8918 38 1 1.2695 3.8142 -0.4625 39 1 1.9298 4.1115 -3.3871 40 1 2.1917 5.2622 -2.0469 41 1 3.2005 6.5601 -4.6290 42 1 3.9790 3.0418 -0.2800 43 1 4.4538 1.9168 -1.5892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034030422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:28 Heat of formation + Delta-G solvation = 88.084001 kcal Electronic energy + Delta-G solvation = -26469.788333 eV Core-core repulsion = 22837.218557 eV Total energy + Delta-G solvation = -3632.569776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.29196 -40.06256 -36.88698 -35.64015 -35.00148 -32.37863 -31.06534 -30.39115 -29.09567 -28.45045 -26.81622 -24.67564 -23.99505 -23.08123 -21.75893 -21.07214 -20.24232 -19.94536 -18.67977 -18.15064 -16.91726 -16.78904 -15.99561 -15.47656 -15.11093 -14.70417 -14.54728 -14.46584 -14.34207 -13.93685 -13.82227 -13.50640 -13.20863 -12.79089 -12.75733 -12.21101 -12.15261 -12.08568 -11.95113 -11.72637 -11.62773 -11.05332 -10.84291 -10.76086 -10.66988 -10.58922 -10.23803 -10.04705 -9.88432 -9.72184 -9.55832 -9.15124 -8.52875 -8.34209 -8.16233 -7.63563 -6.64160 -5.58375 -2.90300 0.51143 1.44936 1.95819 2.31045 2.52442 2.76868 3.18747 3.37955 3.48513 3.52297 3.53931 4.48418 4.62131 4.70886 4.77131 4.86040 5.04297 5.10590 5.27858 5.33836 5.52411 5.56013 5.59405 5.65411 5.68451 5.69206 5.81954 5.88378 5.91615 5.97463 6.13622 6.27198 6.37185 6.55845 6.58737 6.66634 6.74656 6.81213 7.21547 7.32201 7.60617 7.69153 7.78526 7.94954 8.36831 8.42122 9.35194 9.95769 10.63133 11.53478 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.002854 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.206154 B = 9810.125067 C =10449.098506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 N -0.598 5.598 4 C 0.584 3.416 5 O -0.503 6.503 6 C -0.236 4.236 7 C -0.033 4.033 8 C 0.021 3.979 9 N -0.560 5.560 10 H 0.418 0.582 11 C 0.051 3.949 12 C -0.174 4.174 13 C -0.224 4.224 14 S 0.198 5.802 15 C 0.133 3.867 16 H 0.094 0.906 17 C -0.151 4.151 18 C 0.185 3.815 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.924 5.924 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.119 3.881 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.251 0.749 42 H 0.057 0.943 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 -16.920 19.454 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.038 4.038 3 N -0.331 5.331 4 C 0.371 3.629 5 O -0.380 6.380 6 C -0.356 4.356 7 C -0.069 4.069 8 C -0.092 4.092 9 N -0.161 5.161 10 H 0.255 0.745 11 C -0.082 4.082 12 C -0.203 4.203 13 C -0.345 4.345 14 S 0.462 5.538 15 C 0.030 3.970 16 H 0.112 0.888 17 C -0.191 4.191 18 C 0.060 3.940 19 N -0.329 5.329 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.008 4.008 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.191 0.809 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.413 -17.040 18.346 26.749 hybrid contribution 1.395 1.614 0.946 2.334 sum -8.018 -15.425 19.292 25.969 Atomic orbital electron populations 1.22494 0.95483 1.02995 1.03362 1.21939 0.95138 0.83214 1.03472 1.47787 1.65675 1.13470 1.06119 1.16888 0.78941 0.85230 0.81838 1.90884 1.42136 1.18892 1.86067 1.23912 1.11905 1.02759 0.97008 1.19241 0.99555 0.99849 0.88259 1.18038 1.08153 0.99015 0.83963 1.41938 1.47617 1.22231 1.04272 0.74508 1.21843 0.98750 0.88174 0.99449 1.20109 1.08923 1.02491 0.88813 1.24262 1.07845 1.00720 1.01630 1.84653 1.55138 1.21024 0.92950 1.22463 0.98164 0.93742 0.82606 0.88843 1.23219 0.97960 0.96346 1.01534 1.21049 0.82308 0.95098 0.95521 1.44310 1.04422 1.36941 1.47224 1.19006 0.87093 1.12458 1.16386 0.90625 1.24780 0.96784 0.98968 1.00167 1.69960 1.19305 1.28593 1.39360 0.86198 0.81600 0.78482 0.79486 1.21282 1.21683 1.21283 1.22051 0.92405 0.90730 0.95569 0.91236 0.90892 0.91004 0.88889 0.89654 0.83502 0.80854 0.83876 0.92519 0.91284 0.93742 0.93987 0.93855 0.92561 0.95116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.93 37.16 0.33 -1.42 16 2 C 0.09 0.97 5.63 -4.04 -0.02 0.95 16 3 N -0.60 -9.28 2.56 -165.30 -0.42 -9.70 16 4 C 0.58 10.02 6.88 -12.97 -0.09 9.93 16 5 O -0.50 -10.72 12.87 5.16 0.07 -10.66 16 6 C -0.24 -3.32 6.13 -37.17 -0.23 -3.55 16 7 C -0.03 -0.44 9.88 -40.23 -0.40 -0.84 16 8 C 0.02 0.25 7.67 -84.02 -0.64 -0.40 16 9 N -0.56 -4.62 6.21 -10.90 -0.07 -4.69 16 10 H 0.42 2.23 8.96 -40.82 -0.37 1.86 16 11 C 0.05 0.36 11.85 -16.93 -0.20 0.16 16 12 C -0.17 -1.55 10.85 -39.61 -0.43 -1.98 16 13 C -0.22 -2.55 7.31 -38.29 -0.28 -2.83 16 14 S 0.20 2.13 15.21 -107.50 -1.64 0.50 16 15 C 0.13 2.49 3.55 -65.79 -0.23 2.25 16 16 H 0.09 1.60 7.84 -51.93 -0.41 1.19 16 17 C -0.15 -3.12 6.34 -24.89 -0.16 -3.28 16 18 C 0.19 4.83 5.37 -3.07 -0.02 4.81 16 19 N -0.60 -16.51 3.39 -170.07 -0.58 -17.09 16 20 C -0.22 -6.51 10.28 -15.06 -0.15 -6.67 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -28.31 10.31 55.49 0.57 -27.74 16 24 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.12 2.74 6.58 -2.53 -0.02 2.72 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.75 5.73 -35.04 -0.20 0.55 16 32 H 0.09 0.89 7.89 -51.93 -0.41 0.49 16 33 H 0.09 0.88 4.71 -24.05 -0.11 0.76 16 34 H 0.15 1.93 8.01 -52.49 -0.42 1.51 16 35 H 0.17 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.51 6.44 -51.93 -0.33 1.17 16 39 H 0.04 1.24 7.38 -51.93 -0.38 0.85 16 40 H 0.04 1.23 7.50 -51.93 -0.39 0.84 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 1.40 5.33 -51.93 -0.28 1.13 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -36.11 348.82 -9.85 -45.96 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.38 Total: 0.73 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.64 Total: -0.57 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.50 Total: -59.22 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.64 Total: 0.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.11 -9.85 -45.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034030422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.049 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds