Wall clock time and date at job start Tue Mar 31 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47583 * 2 1 4 4 C 1.34780 * 119.99821 * 88.22069 * 3 2 1 5 5 O 1.21729 * 120.00051 * 174.41665 * 4 3 2 6 6 C 1.46412 * 119.99892 * 354.14906 * 4 3 2 7 7 C 1.35777 * 124.95667 * 172.69147 * 6 4 3 8 8 C 1.38880 * 115.18646 * 179.97438 * 7 6 4 9 9 N 1.39739 * 139.91834 * 179.97438 * 8 7 6 10 10 H 0.97006 * 125.63233 * 359.97438 * 9 8 7 11 11 C 1.36206 * 108.73561 * 179.97438 * 9 8 7 12 12 C 1.34508 * 109.29787 * 0.02562 * 11 9 8 13 13 C 1.38239 * 113.38857 * 359.97438 * 8 7 6 14 14 S 1.75622 * 124.96077 * 352.38083 * 6 4 3 15 15 C 1.46494 * 119.99982 * 268.22503 * 3 2 1 16 16 H 1.08995 * 110.88931 * 356.11835 * 15 3 2 17 17 C 1.55160 * 111.00368 * 119.99935 * 15 3 2 18 18 C 1.54326 * 102.94189 * 153.57160 * 17 15 3 19 19 N 1.47017 * 107.27352 * 337.80839 * 18 17 15 20 20 C 1.36939 * 125.64917 * 178.98381 * 19 18 17 21 21 H 1.07998 * 119.99711 * 179.97438 * 20 19 18 22 22 C 1.38808 * 120.00092 * 359.97256 * 20 19 18 23 23 N 1.31620 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00092 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46962 * 60.00612 * 24 22 20 26 26 H 1.48496 * 109.47111 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47391 * 300.00392 * 24 22 20 28 28 C 1.47429 * 108.70014 * 358.93934 * 19 18 17 29 29 H 1.09001 * 109.47389 * 59.99415 * 1 2 3 30 30 H 1.08994 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46940 * 299.99910 * 1 2 3 32 32 H 1.09002 * 109.46732 * 239.99592 * 2 1 3 33 33 H 1.09003 * 109.46657 * 120.00488 * 2 1 3 34 34 H 1.07997 * 122.40959 * 359.93354 * 7 6 4 35 35 H 1.08003 * 125.35268 * 179.97438 * 11 9 8 36 36 H 1.07998 * 126.07714 * 180.02562 * 12 11 9 37 37 H 1.08991 * 110.72193 * 271.93810 * 17 15 3 38 38 H 1.08998 * 110.72222 * 35.21346 * 17 15 3 39 39 H 1.09000 * 109.87936 * 97.22516 * 18 17 15 40 40 H 1.09000 * 109.88122 * 218.38756 * 18 17 15 41 41 H 0.97002 * 119.99877 * 179.97438 * 23 22 20 42 42 H 1.08996 * 110.36301 * 265.28557 * 28 19 18 43 43 H 1.09005 * 110.36406 * 142.97345 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2089 2.0285 1.1667 5 8 2.7099 3.1379 1.1724 6 6 1.8079 1.3999 2.4267 7 6 2.0778 1.8930 3.6626 8 6 1.6002 1.1304 4.7205 9 7 1.5760 1.1366 6.1177 10 1 1.9715 1.8154 6.6867 11 6 0.9055 0.0321 6.5485 12 6 0.4984 -0.6838 5.4850 13 6 0.9270 -0.0075 4.3167 14 16 0.9009 -0.0981 2.5600 15 6 2.2997 2.0586 -1.2681 16 1 2.1607 1.3806 -2.1101 17 6 1.4229 3.3289 -1.4264 18 6 2.2711 4.2205 -2.3576 19 7 3.6656 3.7693 -2.2428 20 6 4.7320 4.2910 -2.9253 21 1 5.7220 3.8882 -2.7699 22 6 4.5406 5.3375 -3.8170 23 7 3.3342 5.8286 -4.0061 24 14 5.9954 6.0495 -4.7476 25 1 6.6241 4.9863 -5.5720 26 1 5.5285 7.1492 -5.6296 27 1 6.9901 6.5795 -3.7807 28 6 3.7260 2.6630 -1.2702 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.6252 2.8118 3.8123 35 1 0.7292 -0.2285 7.5817 36 1 -0.0572 -1.6094 5.5163 37 1 0.4685 3.0832 -1.8918 38 1 1.2695 3.8142 -0.4625 39 1 1.9298 4.1115 -3.3871 40 1 2.1917 5.2622 -2.0469 41 1 3.2005 6.5601 -4.6290 42 1 3.9790 3.0418 -0.2800 43 1 4.4538 1.9168 -1.5892 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034030422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:28 Heat of formation + Delta-G solvation = 63.878540 kcal Electronic energy + Delta-G solvation = -26470.837961 eV Core-core repulsion = 22837.218557 eV Total energy + Delta-G solvation = -3633.619403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02854 -41.40586 -38.59501 -36.97099 -35.98571 -34.35288 -31.94260 -31.61199 -30.81793 -29.70717 -28.32023 -26.53307 -25.20108 -24.04843 -22.87024 -22.06522 -21.92758 -21.30880 -19.63553 -19.27302 -18.81814 -18.00809 -17.26858 -16.69940 -16.35339 -16.22823 -16.01000 -15.61867 -15.42842 -15.35795 -14.86015 -14.62538 -14.35675 -14.18590 -14.09523 -13.67245 -13.51907 -13.45062 -13.04219 -12.92674 -12.85958 -12.73897 -12.62853 -12.24732 -12.10893 -12.07521 -11.95138 -11.81548 -11.61262 -11.43518 -10.74717 -10.64819 -10.49811 -9.74938 -8.99614 -8.84146 -8.40062 -7.84162 -5.19943 -0.44116 0.56876 1.10216 1.43405 1.44325 1.48729 1.54745 1.77611 1.81237 2.19180 2.28836 2.51013 3.32339 3.47587 3.71701 3.89817 3.93726 4.03236 4.06864 4.22398 4.23459 4.27220 4.30910 4.49326 4.59458 4.62298 4.70022 4.77967 4.87281 4.96130 4.96808 5.01872 5.04312 5.13353 5.17336 5.40054 5.42018 5.64348 5.66412 5.67981 5.74383 5.87708 6.18939 6.37413 6.65625 7.08825 7.12729 7.76648 8.42934 9.26354 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025467 B = 0.002854 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.206154 B = 9810.125067 C =10449.098506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 N -0.594 5.594 4 C 0.581 3.419 5 O -0.562 6.562 6 C -0.277 4.277 7 C -0.032 4.032 8 C -0.013 4.013 9 N -0.554 5.554 10 H 0.430 0.570 11 C 0.082 3.918 12 C -0.198 4.198 13 C -0.234 4.234 14 S 0.250 5.750 15 C 0.154 3.846 16 H 0.121 0.879 17 C -0.135 4.135 18 C 0.196 3.804 19 N -0.623 5.623 20 C -0.244 4.244 21 H 0.079 0.921 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.984 3.016 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.115 3.885 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.132 0.868 35 H 0.222 0.778 36 H 0.166 0.834 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.022 0.978 40 H -0.006 1.006 41 H 0.247 0.753 42 H 0.035 0.965 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 -20.276 21.181 31.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 N -0.325 5.325 4 C 0.370 3.630 5 O -0.443 6.443 6 C -0.397 4.397 7 C -0.069 4.069 8 C -0.125 4.125 9 N -0.156 5.156 10 H 0.270 0.730 11 C -0.053 4.053 12 C -0.227 4.227 13 C -0.355 4.355 14 S 0.516 5.484 15 C 0.050 3.950 16 H 0.139 0.861 17 C -0.174 4.174 18 C 0.070 3.930 19 N -0.349 5.349 20 C -0.373 4.373 21 H 0.097 0.903 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.811 3.189 25 H -0.197 1.197 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.011 4.011 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.238 0.762 36 H 0.184 0.816 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.013 0.987 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.391 -20.456 20.085 30.493 hybrid contribution 1.671 2.590 0.646 3.150 sum -8.720 -17.866 20.731 28.723 Atomic orbital electron populations 1.22483 0.93918 1.04919 1.02673 1.22311 0.96394 0.80520 1.05114 1.47789 1.65281 1.15013 1.04434 1.17355 0.77873 0.84615 0.83145 1.90845 1.44892 1.21480 1.87052 1.23611 1.14952 1.05532 0.95589 1.19280 0.99041 0.99479 0.89141 1.17963 1.09728 0.99455 0.85323 1.42100 1.47348 1.23025 1.03152 0.73012 1.22688 0.95244 0.86127 1.01234 1.20548 1.10151 1.03856 0.88157 1.24756 1.07246 1.00822 1.02685 1.84160 1.53557 1.18063 0.92653 1.22112 0.94307 0.93527 0.85054 0.86128 1.22998 0.98661 0.96259 0.99500 1.20767 0.83043 0.93849 0.95302 1.44621 1.04469 1.38222 1.47623 1.19421 0.88042 1.13044 1.16771 0.90291 1.25710 0.99756 0.99355 1.01288 1.70198 1.21388 1.28803 1.39795 0.85081 0.78107 0.77707 0.77993 1.19675 1.21721 1.20782 1.22125 0.95741 0.89867 0.93376 0.91663 0.87586 0.91980 0.86659 0.88666 0.85020 0.76151 0.81642 0.89346 0.92898 0.95977 0.98736 0.94340 0.94698 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.93 71.98 0.64 -2.27 16 2 C 0.08 1.58 5.63 86.38 0.49 2.07 16 3 N -0.59 -18.23 2.56 -795.10 -2.04 -20.27 16 4 C 0.58 20.71 6.88 86.37 0.59 21.30 16 5 O -0.56 -25.76 12.87 -4.44 -0.06 -25.82 16 6 C -0.28 -7.97 6.13 23.83 0.15 -7.82 16 7 C -0.03 -0.90 9.88 21.85 0.22 -0.69 16 8 C -0.01 -0.28 7.67 38.03 0.29 0.01 16 9 N -0.55 -7.79 6.21 -188.39 -1.17 -8.96 16 10 H 0.43 3.66 8.96 -92.70 -0.83 2.83 16 11 C 0.08 0.80 11.85 83.16 0.99 1.78 16 12 C -0.20 -2.80 10.85 22.25 0.24 -2.56 16 13 C -0.23 -4.81 7.31 23.11 0.17 -4.64 16 14 S 0.25 4.95 15.21 -56.49 -0.86 4.09 16 15 C 0.15 5.74 3.55 46.38 0.16 5.90 16 16 H 0.12 3.87 7.84 -2.39 -0.02 3.86 16 17 C -0.14 -5.72 6.34 31.78 0.20 -5.52 16 18 C 0.20 10.76 5.37 86.73 0.47 11.22 16 19 N -0.62 -35.64 3.39 -691.99 -2.35 -37.99 16 20 C -0.24 -14.86 10.28 84.03 0.86 -14.00 16 21 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 22 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 23 N -0.95 -60.78 10.31 21.65 0.22 -60.56 16 24 Si 0.98 48.37 29.55 68.60 2.03 50.40 16 25 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 28 C 0.11 5.46 6.58 86.85 0.57 6.03 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.15 5.73 -13.12 -0.08 1.08 16 32 H 0.12 1.81 7.89 -2.39 -0.02 1.79 16 33 H 0.10 1.73 4.71 -20.11 -0.09 1.64 16 34 H 0.13 3.85 8.01 -2.91 -0.02 3.82 16 35 H 0.22 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.05 2.42 6.44 -2.39 -0.02 2.41 16 39 H 0.02 1.29 7.38 -2.39 -0.02 1.27 16 40 H -0.01 -0.36 7.50 -2.39 -0.02 -0.37 16 41 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.04 1.85 5.33 -2.39 -0.01 1.84 16 43 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -84.93 348.82 2.36 -82.57 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.08 Total: 9.40 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.51 Total: 7.13 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -5.33 Total: -127.77 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -0.86 Total: 4.09 kcal Total: -84.93 2.36 -82.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034030422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.450 kcal (2) G-P(sol) polarization free energy of solvation -84.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds