Wall clock time and date at job start Tue Mar 31 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52548 * 2 1 4 4 C 1.53189 * 109.49972 * 120.08286 * 2 1 3 5 5 N 1.46926 * 108.77621 * 174.58424 * 4 2 1 6 6 C 1.34780 * 120.62619 * 126.41344 * 5 4 2 7 7 O 1.21714 * 120.00240 * 353.19052 * 6 5 4 8 8 C 1.46496 * 119.99508 * 173.19490 * 6 5 4 9 9 C 1.36113 * 125.71387 * 156.12040 * 8 6 5 10 10 C 1.42220 * 107.63078 * 179.97438 * 9 8 6 11 11 C 1.45590 * 140.78180 * 179.97438 * 10 9 8 12 12 C 1.31811 * 114.63497 * 180.02562 * 11 10 9 13 13 S 1.75354 * 111.24649 * 0.02562 * 12 11 10 14 14 C 1.38175 * 106.99424 * 0.02562 * 10 9 8 15 15 N 1.37456 * 108.16610 * 359.77094 * 14 10 9 16 16 H 0.97006 * 125.68721 * 180.22483 * 15 14 10 17 17 C 1.46922 * 118.73829 * 306.39274 * 5 4 2 18 18 C 1.53182 * 108.77838 * 53.60643 * 17 5 4 19 19 C 1.53040 * 109.49430 * 239.92189 * 2 1 3 20 20 H 1.09000 * 109.44794 * 298.69281 * 19 2 1 21 21 N 1.46500 * 109.46339 * 58.66102 * 19 2 1 22 22 C 1.36939 * 119.99929 * 205.06670 * 21 19 2 23 23 H 1.08001 * 119.99740 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99583 * 180.02562 * 22 21 19 25 25 N 1.31619 * 119.99624 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00185 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47263 * 270.00495 * 26 24 22 28 28 H 1.48497 * 109.46960 * 30.00140 * 26 24 22 29 29 H 1.48500 * 109.47059 * 149.99944 * 26 24 22 30 30 H 1.09004 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47026 * 300.07976 * 1 2 3 32 32 H 1.08997 * 109.47122 * 60.07918 * 1 2 3 33 33 H 1.09001 * 109.58585 * 54.79336 * 4 2 1 34 34 H 1.09004 * 109.58770 * 294.37417 * 4 2 1 35 35 H 1.08002 * 126.18407 * 359.95705 * 9 8 6 36 36 H 1.07996 * 122.68267 * 0.05233 * 11 10 9 37 37 H 1.08002 * 124.37898 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.58945 * 293.81635 * 17 5 4 39 39 H 1.09002 * 109.70119 * 173.46582 * 17 5 4 40 40 H 1.08996 * 109.50336 * 185.41123 * 18 17 5 41 41 H 1.09002 * 109.49668 * 65.31467 * 18 17 5 42 42 H 0.97001 * 119.99788 * 25.06797 * 21 19 2 43 43 H 0.97002 * 119.99562 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5046 -0.8292 1.1694 6 6 4.2811 -0.3864 2.1782 7 8 3.7826 0.2170 3.1103 8 6 5.7252 -0.6315 2.1527 9 6 6.6674 0.1027 2.8053 10 6 7.9365 -0.4703 2.5161 11 6 9.3507 -0.2855 2.8090 12 6 10.1494 -1.1652 2.2384 13 16 9.2423 -2.3171 1.2765 14 6 7.7120 -1.5497 1.6833 15 7 6.3583 -1.6493 1.4663 16 1 5.9206 -2.3213 0.9205 17 6 4.1052 -1.4267 -0.0309 18 6 3.5708 -0.6951 -1.2661 19 6 2.0407 -0.7230 -1.2484 20 1 1.6967 -1.7572 -1.2351 21 7 1.5264 -0.0529 -2.4453 22 6 1.3950 -0.7496 -3.6169 23 1 1.6701 -1.7931 -3.6584 24 6 0.9081 -0.1144 -4.7512 25 7 0.7813 -0.7841 -5.8771 26 14 0.4316 1.6904 -4.6791 27 1 -0.9994 1.8098 -4.3008 28 1 1.2702 2.3837 -3.6686 29 1 0.6453 2.3123 -6.0106 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6052 -1.7216 1.2980 34 1 1.7638 -0.1580 2.1389 35 1 6.4843 0.9647 3.4297 36 1 9.7159 0.5085 3.4434 37 1 11.2237 -1.1752 2.3489 38 1 3.8376 -2.4819 -0.0869 39 1 5.1898 -1.3267 0.0122 40 1 3.9333 -1.1896 -2.1672 41 1 3.9158 0.3388 -1.2541 42 1 1.2790 0.8843 -2.4079 43 1 0.4415 -0.3402 -6.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036133912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:02 Heat of formation + Delta-G solvation = 65.644970 kcal Electronic energy + Delta-G solvation = -26231.871418 eV Core-core repulsion = 22598.328613 eV Total energy + Delta-G solvation = -3633.542805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.75055 -39.79783 -37.81985 -35.73819 -34.82007 -32.99399 -31.69178 -30.77741 -29.99827 -29.00268 -26.53481 -25.43323 -23.49924 -22.85752 -22.23784 -21.56996 -20.39436 -19.92852 -19.59892 -18.43327 -17.59565 -16.85115 -16.13207 -15.64657 -15.41473 -15.00688 -14.82223 -14.54400 -14.48389 -14.08518 -13.87336 -13.59904 -13.41047 -13.12204 -12.98141 -12.59036 -12.53097 -12.19320 -12.06670 -11.89406 -11.73542 -11.49188 -11.12717 -11.07878 -10.98225 -10.80277 -10.61762 -10.31839 -10.15580 -9.86628 -9.73332 -9.65254 -9.00786 -8.76222 -8.50504 -7.91275 -7.35353 -5.84691 -3.20613 0.81429 1.07848 1.19696 1.73066 2.59210 2.72240 2.89996 3.25191 3.32311 3.35573 3.40915 4.19943 4.52420 4.53070 4.72232 4.74249 4.94836 5.02746 5.07538 5.14971 5.25398 5.32672 5.36506 5.46501 5.52166 5.56546 5.72608 5.83986 5.85219 5.89803 5.95315 5.99910 6.14602 6.16474 6.20424 6.31704 6.38765 6.46299 6.58950 6.65799 6.83049 6.87780 7.23436 7.89889 7.94808 8.34309 9.12133 9.85036 10.04658 11.33451 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002975 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.336778 B = 9409.315598 C =10475.073900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.604 5.604 6 C 0.588 3.412 7 O -0.529 6.529 8 C 0.000 4.000 9 C -0.074 4.074 10 C -0.161 4.161 11 C -0.070 4.070 12 C -0.223 4.223 13 S 0.133 5.867 14 C -0.014 4.014 15 N -0.526 5.526 16 H 0.426 0.574 17 C 0.087 3.913 18 C -0.150 4.150 19 C 0.189 3.811 20 H 0.058 0.942 21 N -0.744 5.744 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.932 5.932 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.361 0.639 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.386 -2.527 18.096 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.336 5.336 6 C 0.375 3.625 7 O -0.405 6.405 8 C -0.113 4.113 9 C -0.102 4.102 10 C -0.174 4.174 11 C -0.101 4.101 12 C -0.357 4.357 13 S 0.387 5.613 14 C -0.242 4.242 15 N -0.134 5.134 16 H 0.270 0.730 17 C -0.037 4.037 18 C -0.191 4.191 19 C 0.079 3.921 20 H 0.076 0.924 21 N -0.386 5.386 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.204 1.204 29 H -0.217 1.217 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.187 0.813 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.355 -3.691 17.449 23.534 hybrid contribution -0.787 2.138 0.226 2.290 sum 14.568 -1.553 17.675 22.957 Atomic orbital electron populations 1.21667 0.93927 1.02213 1.01694 1.21800 0.96732 1.00200 0.94736 0.91111 1.21758 0.77578 1.01164 0.99522 1.48084 1.07525 1.60404 1.17598 1.17028 0.83834 0.79147 0.82444 1.90844 1.73400 1.41120 1.35170 1.19988 0.92700 0.95026 1.03541 1.20698 0.88409 1.00465 1.00618 1.19373 0.93861 0.99134 1.05039 1.20328 0.89658 0.99741 1.00334 1.24874 1.03335 1.01327 1.06149 1.83983 0.90542 1.32904 1.53902 1.23650 0.89604 1.03918 1.07066 1.42256 1.03063 1.26584 1.41497 0.73045 1.22301 0.97986 0.97891 0.85504 1.22643 1.00204 1.00579 0.95673 1.20158 0.90220 0.96115 0.85573 0.92432 1.42766 1.78104 1.10097 1.07606 1.19031 1.36644 0.95650 0.86124 0.89235 1.24660 1.01220 0.97442 0.95597 1.69696 1.51900 1.35721 1.00672 0.86591 0.78613 0.86683 0.76875 1.21005 1.20354 1.21740 0.92499 0.93396 0.91392 0.91040 0.88874 0.82696 0.83785 0.81274 0.90900 0.90091 0.89888 0.91999 0.80547 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.03 37.16 0.34 -1.64 16 2 C -0.11 -1.71 2.46 -90.50 -0.22 -1.93 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.12 1.60 5.73 -3.71 -0.02 1.57 16 5 N -0.60 -7.88 2.97 -174.38 -0.52 -8.40 16 6 C 0.59 8.36 7.61 -12.93 -0.10 8.26 16 7 O -0.53 -8.93 16.36 5.18 0.08 -8.84 16 8 C 0.00 0.00 6.30 -82.47 -0.52 -0.52 16 9 C -0.07 -0.91 10.67 -38.82 -0.41 -1.32 16 10 C -0.16 -1.83 6.80 -105.46 -0.72 -2.55 16 11 C -0.07 -0.62 10.42 -38.55 -0.40 -1.02 16 12 C -0.22 -1.71 11.03 28.84 0.32 -1.39 16 13 S 0.13 1.14 23.24 -107.50 -2.50 -1.36 16 14 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 15 N -0.53 -5.64 4.81 -7.94 -0.04 -5.68 16 16 H 0.43 3.74 6.38 -40.82 -0.26 3.48 16 17 C 0.09 1.03 5.27 -3.72 -0.02 1.01 16 18 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 19 C 0.19 3.28 2.19 -67.89 -0.15 3.13 16 20 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 21 N -0.74 -16.36 4.21 -53.38 -0.22 -16.59 16 22 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 23 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 26 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.13 7.36 -51.93 -0.38 0.74 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 35 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.87 4.23 -51.93 -0.22 0.65 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.36 8.03 5.37 -40.82 -0.22 7.81 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -32.21 357.48 -9.87 -42.08 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.68 Total: 9.92 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.44 Total: -5.70 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.01 Total: -58.35 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.21 -9.87 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036133912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.730 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds