Wall clock time and date at job start Tue Mar 31 2020 18:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.52548 * 2 1 4 4 C 1.53189 * 109.49972 * 120.08286 * 2 1 3 5 5 N 1.46926 * 108.77621 * 174.58424 * 4 2 1 6 6 C 1.34780 * 120.62619 * 126.41344 * 5 4 2 7 7 O 1.21714 * 120.00240 * 353.19052 * 6 5 4 8 8 C 1.46496 * 119.99508 * 173.19490 * 6 5 4 9 9 C 1.36113 * 125.71387 * 156.12040 * 8 6 5 10 10 C 1.42220 * 107.63078 * 179.97438 * 9 8 6 11 11 C 1.45590 * 140.78180 * 179.97438 * 10 9 8 12 12 C 1.31811 * 114.63497 * 180.02562 * 11 10 9 13 13 S 1.75354 * 111.24649 * 0.02562 * 12 11 10 14 14 C 1.38175 * 106.99424 * 0.02562 * 10 9 8 15 15 N 1.37456 * 108.16610 * 359.77094 * 14 10 9 16 16 H 0.97006 * 125.68721 * 180.22483 * 15 14 10 17 17 C 1.46922 * 118.73829 * 306.39274 * 5 4 2 18 18 C 1.53182 * 108.77838 * 53.60643 * 17 5 4 19 19 C 1.53040 * 109.49430 * 239.92189 * 2 1 3 20 20 H 1.09000 * 109.44794 * 298.69281 * 19 2 1 21 21 N 1.46500 * 109.46339 * 58.66102 * 19 2 1 22 22 C 1.36939 * 119.99929 * 205.06670 * 21 19 2 23 23 H 1.08001 * 119.99740 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99583 * 180.02562 * 22 21 19 25 25 N 1.31619 * 119.99624 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00185 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47263 * 270.00495 * 26 24 22 28 28 H 1.48497 * 109.46960 * 30.00140 * 26 24 22 29 29 H 1.48500 * 109.47059 * 149.99944 * 26 24 22 30 30 H 1.09004 * 109.47029 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47026 * 300.07976 * 1 2 3 32 32 H 1.08997 * 109.47122 * 60.07918 * 1 2 3 33 33 H 1.09001 * 109.58585 * 54.79336 * 4 2 1 34 34 H 1.09004 * 109.58770 * 294.37417 * 4 2 1 35 35 H 1.08002 * 126.18407 * 359.95705 * 9 8 6 36 36 H 1.07996 * 122.68267 * 0.05233 * 11 10 9 37 37 H 1.08002 * 124.37898 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.58945 * 293.81635 * 17 5 4 39 39 H 1.09002 * 109.70119 * 173.46582 * 17 5 4 40 40 H 1.08996 * 109.50336 * 185.41123 * 18 17 5 41 41 H 1.09002 * 109.49668 * 65.31467 * 18 17 5 42 42 H 0.97001 * 119.99788 * 25.06797 * 21 19 2 43 43 H 0.97002 * 119.99562 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5046 -0.8292 1.1694 6 6 4.2811 -0.3864 2.1782 7 8 3.7826 0.2170 3.1103 8 6 5.7252 -0.6315 2.1527 9 6 6.6674 0.1027 2.8053 10 6 7.9365 -0.4703 2.5161 11 6 9.3507 -0.2855 2.8090 12 6 10.1494 -1.1652 2.2384 13 16 9.2423 -2.3171 1.2765 14 6 7.7120 -1.5497 1.6833 15 7 6.3583 -1.6493 1.4663 16 1 5.9206 -2.3213 0.9205 17 6 4.1052 -1.4267 -0.0309 18 6 3.5708 -0.6951 -1.2661 19 6 2.0407 -0.7230 -1.2484 20 1 1.6967 -1.7572 -1.2351 21 7 1.5264 -0.0529 -2.4453 22 6 1.3950 -0.7496 -3.6169 23 1 1.6701 -1.7931 -3.6584 24 6 0.9081 -0.1144 -4.7512 25 7 0.7813 -0.7841 -5.8771 26 14 0.4316 1.6904 -4.6791 27 1 -0.9994 1.8098 -4.3008 28 1 1.2702 2.3837 -3.6686 29 1 0.6453 2.3123 -6.0106 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6052 -1.7216 1.2980 34 1 1.7638 -0.1580 2.1389 35 1 6.4843 0.9647 3.4297 36 1 9.7159 0.5085 3.4434 37 1 11.2237 -1.1752 2.3489 38 1 3.8376 -2.4819 -0.0869 39 1 5.1898 -1.3267 0.0122 40 1 3.9333 -1.1896 -2.1672 41 1 3.9158 0.3388 -1.2541 42 1 1.2790 0.8843 -2.4079 43 1 0.4415 -0.3402 -6.6698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036133912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:01 Heat of formation + Delta-G solvation = 45.927368 kcal Electronic energy + Delta-G solvation = -26232.726437 eV Core-core repulsion = 22598.328613 eV Total energy + Delta-G solvation = -3634.397824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.64686 -40.87628 -39.09763 -36.64128 -36.14707 -34.50277 -33.28939 -31.74470 -31.51977 -29.90030 -27.62937 -26.86927 -24.77660 -23.83048 -23.31283 -22.95980 -21.40866 -21.17614 -20.40000 -19.66238 -19.20768 -17.89018 -17.18635 -16.82934 -16.65429 -16.15594 -15.95474 -15.60101 -15.46780 -15.37956 -15.06570 -14.92254 -14.55804 -14.52625 -14.19938 -13.79911 -13.71643 -13.51692 -13.12924 -12.97758 -12.89497 -12.77804 -12.53889 -12.50010 -12.20149 -12.04101 -11.91909 -11.79206 -11.74307 -11.32660 -11.22929 -10.94836 -10.56371 -9.87412 -9.33690 -9.24932 -8.65334 -8.02035 -5.34031 0.07116 0.21410 0.43081 1.07967 1.37065 1.38065 1.45191 1.64941 1.75335 2.07720 2.31119 2.47421 3.24553 3.29690 3.49654 3.66767 3.79346 3.82577 3.93935 4.01092 4.11688 4.24095 4.34310 4.42782 4.48675 4.63124 4.64455 4.70594 4.76147 4.76576 4.82834 4.94687 5.07419 5.15286 5.18074 5.24369 5.32577 5.38736 5.43037 5.53171 5.64143 5.77952 6.07197 6.17940 6.22237 6.86364 7.08020 7.84789 8.02701 9.19395 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002975 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.336778 B = 9409.315598 C =10475.073900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.061 0.939 4 C 0.126 3.874 5 N -0.602 5.602 6 C 0.589 3.411 7 O -0.560 6.560 8 C -0.016 4.016 9 C -0.084 4.084 10 C -0.178 4.178 11 C -0.087 4.087 12 C -0.212 4.212 13 S 0.152 5.848 14 C -0.028 4.028 15 N -0.521 5.521 16 H 0.433 0.567 17 C 0.096 3.904 18 C -0.142 4.142 19 C 0.183 3.817 20 H 0.055 0.945 21 N -0.747 5.747 22 C -0.219 4.219 23 H 0.063 0.937 24 C -0.061 4.061 25 N -0.983 5.983 26 Si 0.946 3.054 27 H -0.279 1.279 28 H -0.258 1.258 29 H -0.300 1.300 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.201 0.799 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.362 0.638 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -2.457 19.953 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 H 0.079 0.921 4 C 0.004 3.996 5 N -0.333 5.333 6 C 0.379 3.621 7 O -0.440 6.440 8 C -0.129 4.129 9 C -0.112 4.112 10 C -0.191 4.191 11 C -0.117 4.117 12 C -0.345 4.345 13 S 0.405 5.595 14 C -0.256 4.256 15 N -0.130 5.130 16 H 0.278 0.722 17 C -0.027 4.027 18 C -0.183 4.183 19 C 0.075 3.925 20 H 0.073 0.927 21 N -0.389 5.389 22 C -0.350 4.350 23 H 0.081 0.919 24 C -0.253 4.253 25 N -0.634 5.634 26 Si 0.774 3.226 27 H -0.206 1.206 28 H -0.183 1.183 29 H -0.227 1.227 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.218 0.782 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.195 0.805 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.036 -3.634 19.356 26.040 hybrid contribution -1.174 2.018 -0.287 2.353 sum 15.862 -1.616 19.068 24.856 Atomic orbital electron populations 1.21638 0.93393 1.02551 1.01677 1.21676 0.97136 0.99471 0.94179 0.92087 1.21735 0.77663 1.01977 0.98214 1.48100 1.07529 1.60085 1.17589 1.17193 0.84407 0.78455 0.82087 1.90820 1.74124 1.42626 1.36384 1.19772 0.91974 0.96238 1.04930 1.20894 0.89105 1.00653 1.00541 1.19719 0.94742 0.99288 1.05325 1.20555 0.88572 1.01076 1.01493 1.25313 1.04727 0.99974 1.04493 1.83990 0.89048 1.32715 1.53699 1.24076 0.90159 1.04321 1.07054 1.42134 1.03137 1.26358 1.41381 0.72186 1.22286 0.98681 0.98509 0.83251 1.22438 0.98570 1.00287 0.96994 1.20408 0.91305 0.95872 0.84932 0.92682 1.42792 1.78442 1.10043 1.07640 1.19003 1.33838 0.94664 0.87447 0.91865 1.25373 1.02702 1.01754 0.95453 1.69861 1.54439 1.37590 1.01516 0.85547 0.78613 0.81736 0.76684 1.20550 1.18323 1.22689 0.92013 0.91100 0.93688 0.89072 0.88897 0.82494 0.81796 0.78163 0.88384 0.88654 0.91330 0.93182 0.80494 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.03 71.98 0.65 -3.02 16 2 C -0.10 -2.96 2.46 -10.72 -0.03 -2.99 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.13 3.06 5.73 86.36 0.49 3.55 16 5 N -0.60 -14.72 2.97 -823.82 -2.45 -17.17 16 6 C 0.59 16.17 7.61 86.39 0.66 16.82 16 7 O -0.56 -18.61 16.36 -4.39 -0.07 -18.69 16 8 C -0.02 -0.39 6.30 39.81 0.25 -0.14 16 9 C -0.08 -1.99 10.67 22.76 0.24 -1.75 16 10 C -0.18 -3.78 6.80 -20.41 -0.14 -3.92 16 11 C -0.09 -1.34 10.42 23.39 0.24 -1.09 16 12 C -0.21 -2.58 11.03 67.05 0.74 -1.84 16 13 S 0.15 2.23 23.24 -56.49 -1.31 0.92 16 14 C -0.03 -0.55 8.41 83.80 0.70 0.15 16 15 N -0.52 -10.39 4.81 -179.04 -0.86 -11.26 16 16 H 0.43 6.79 6.38 -92.70 -0.59 6.20 16 17 C 0.10 2.11 5.27 86.36 0.46 2.56 16 18 C -0.14 -4.28 5.66 30.67 0.17 -4.10 16 19 C 0.18 6.18 2.19 45.02 0.10 6.28 16 20 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 21 N -0.75 -32.56 4.21 -322.80 -1.36 -33.92 16 22 C -0.22 -11.74 10.41 84.03 0.87 -10.86 16 23 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 24 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 25 N -0.98 -61.63 13.97 21.65 0.30 -61.32 16 26 Si 0.95 45.00 27.74 68.60 1.90 46.90 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 28 H -0.26 -11.29 6.52 99.48 0.65 -10.64 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.43 7.36 -2.39 -0.02 1.41 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.34 7.00 -2.38 -0.02 2.32 16 35 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.10 1.88 4.23 -2.39 -0.01 1.87 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.36 15.74 5.37 -92.71 -0.50 15.24 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -70.76 357.48 1.95 -68.81 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.09 Total: 29.12 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.89 Total: -3.40 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -4.37 Total: -123.66 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.07 Total: -18.69 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.31 Total: 0.92 kcal Total: -70.76 1.95 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036133912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.740 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds