Wall clock time and date at job start Tue Mar 31 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.49685 * 2 1 4 4 C 1.53195 * 109.52091 * 239.92170 * 2 1 3 5 5 N 1.46929 * 108.77369 * 185.39240 * 4 2 1 6 6 C 1.34775 * 120.63109 * 233.60741 * 5 4 2 7 7 O 1.21722 * 120.00170 * 359.81757 * 6 5 4 8 8 C 1.46494 * 119.99643 * 179.81931 * 6 5 4 9 9 C 1.36110 * 125.70850 * 209.46436 * 8 6 5 10 10 C 1.42227 * 107.62378 * 179.84907 * 9 8 6 11 11 C 1.45593 * 140.77917 * 180.09148 * 10 9 8 12 12 C 1.31810 * 114.63734 * 180.33438 * 11 10 9 13 13 S 1.75354 * 111.24053 * 0.03008 * 12 11 10 14 14 C 1.38168 * 106.99699 * 0.41201 * 10 9 8 15 15 N 1.37460 * 108.16673 * 359.75220 * 14 10 9 16 16 H 0.96999 * 125.68337 * 180.02562 * 15 14 10 17 17 C 1.46928 * 118.73443 * 53.61370 * 5 4 2 18 18 C 1.53193 * 108.77246 * 306.38651 * 17 5 4 19 19 C 1.53034 * 109.49774 * 120.06777 * 2 1 3 20 20 H 1.09004 * 109.46052 * 301.36687 * 19 2 1 21 21 N 1.46504 * 109.46136 * 61.33069 * 19 2 1 22 22 C 1.36940 * 119.99666 * 205.06577 * 21 19 2 23 23 H 1.07997 * 119.99958 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99569 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00406 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99994 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47088 * 59.99828 * 26 24 22 28 28 H 1.48498 * 109.47421 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46705 * 300.00270 * 26 24 22 30 30 H 1.08997 * 109.46813 * 299.93372 * 1 2 3 31 31 H 1.09005 * 109.47415 * 59.93298 * 1 2 3 32 32 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58667 * 305.18283 * 4 2 1 34 34 H 1.09004 * 109.58790 * 65.60908 * 4 2 1 35 35 H 1.08000 * 126.19098 * 359.97438 * 9 8 6 36 36 H 1.08004 * 122.68467 * 0.30859 * 11 10 9 37 37 H 1.07995 * 124.38211 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.58481 * 186.60027 * 17 5 4 39 39 H 1.08997 * 109.59069 * 66.17677 * 17 5 4 40 40 H 1.08996 * 109.49871 * 294.68156 * 18 17 5 41 41 H 1.09006 * 109.49513 * 174.58704 * 18 17 5 42 42 H 0.96994 * 119.99944 * 25.06393 * 21 19 2 43 43 H 0.97003 * 120.00169 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2495 5 7 3.5053 -0.8282 -1.1691 6 6 4.2818 -0.3848 -2.1775 7 8 3.7718 0.1050 -3.1683 8 6 5.7396 -0.4923 -2.0811 9 6 6.6384 0.3469 -2.6646 10 6 7.9405 -0.1088 -2.3187 11 6 9.3433 0.2199 -2.5285 12 6 10.1932 -0.5986 -1.9411 13 16 9.3538 -1.8650 -1.0656 14 6 7.7793 -1.2330 -1.5318 15 7 6.4322 -1.4657 -1.3878 16 1 6.0342 -2.1922 -0.8831 17 6 4.1059 -1.4255 0.0314 18 6 3.5708 -0.6940 1.2664 19 6 2.0408 -0.7228 1.2485 20 1 1.6577 -0.2243 2.1389 21 7 1.5790 -2.1130 1.2309 22 6 1.4476 -2.8057 2.4048 23 1 1.6840 -2.3270 3.3436 24 6 1.0096 -4.1227 2.3881 25 7 0.7210 -4.7060 1.2441 26 14 0.8296 -5.0675 3.9896 27 1 -0.1493 -4.3749 4.8656 28 1 0.3502 -6.4432 3.7016 29 1 2.1454 -5.1356 4.6746 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6063 -1.7217 -1.2979 34 1 1.7643 -0.1579 -2.1389 35 1 6.4050 1.2049 -3.2776 36 1 9.6620 1.0665 -3.1186 37 1 11.2676 -0.5023 -1.9930 38 1 5.1902 -1.3229 -0.0129 39 1 3.8387 -2.4807 0.0874 40 1 3.9155 0.3400 1.2546 41 1 3.9334 -1.1885 2.1677 42 1 1.3664 -2.5428 0.3877 43 1 0.4153 -5.6265 1.2324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036133914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:07 Heat of formation + Delta-G solvation = 64.601189 kcal Electronic energy + Delta-G solvation = -26636.613597 eV Core-core repulsion = 23003.025530 eV Total energy + Delta-G solvation = -3633.588067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.60158 -39.65386 -37.71042 -35.59958 -34.34722 -32.91189 -31.52991 -30.63373 -29.29040 -28.88766 -26.29599 -25.27903 -23.68789 -23.10820 -22.24830 -21.77262 -20.22805 -19.48881 -19.00808 -17.95126 -17.41983 -16.66421 -15.91954 -15.50330 -15.21981 -14.87593 -14.70261 -14.42365 -14.27733 -14.03870 -13.79073 -13.47290 -13.38375 -12.98757 -12.85618 -12.60093 -12.30352 -11.99372 -11.92223 -11.56011 -11.40930 -11.27962 -10.97177 -10.95285 -10.88759 -10.57596 -10.55511 -10.28924 -9.94326 -9.92979 -9.63712 -9.59273 -9.01264 -8.47088 -8.34209 -7.78381 -7.06856 -5.86898 -3.16007 0.93929 1.20178 1.37147 1.84182 2.72293 2.94043 3.05795 3.36208 3.41902 3.42636 3.43846 4.37926 4.50388 4.66141 4.86707 4.96337 5.19992 5.27002 5.28241 5.36875 5.42892 5.48206 5.56575 5.63151 5.70409 5.82232 5.90034 5.94301 5.98469 6.06948 6.13489 6.22239 6.28572 6.30891 6.42120 6.51412 6.57429 6.61185 6.66087 6.81485 6.90810 7.03194 7.50353 7.60820 8.16894 8.31410 9.43154 9.98815 10.34073 11.35197 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.003459 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.500480 B = 8092.931747 C = 9615.696417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.595 5.595 6 C 0.583 3.417 7 O -0.534 6.534 8 C 0.007 3.993 9 C -0.081 4.081 10 C -0.161 4.161 11 C -0.070 4.070 12 C -0.225 4.225 13 S 0.131 5.869 14 C -0.016 4.016 15 N -0.523 5.523 16 H 0.428 0.572 17 C 0.093 3.907 18 C -0.147 4.147 19 C 0.179 3.821 20 H 0.053 0.947 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.169 0.831 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.384 0.616 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.192 9.361 -5.607 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.370 3.630 7 O -0.412 6.412 8 C -0.106 4.106 9 C -0.109 4.109 10 C -0.174 4.174 11 C -0.101 4.101 12 C -0.359 4.359 13 S 0.384 5.616 14 C -0.244 4.244 15 N -0.132 5.132 16 H 0.273 0.727 17 C -0.029 4.029 18 C -0.189 4.189 19 C 0.068 3.932 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.186 0.814 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.219 0.781 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.223 8.222 -5.045 18.022 hybrid contribution -0.696 -0.025 0.226 0.732 sum 14.527 8.197 -4.819 17.362 Atomic orbital electron populations 1.21665 0.94022 1.03241 1.00577 1.21714 0.96662 0.98937 0.95547 0.91447 1.21731 0.77640 1.01881 0.98966 1.48072 1.07546 1.59291 1.17696 1.17044 0.84008 0.78765 0.83149 1.90834 1.73580 1.46006 1.30737 1.20038 0.92075 0.95083 1.03387 1.20639 0.88440 1.00486 1.01326 1.19356 0.93750 0.98432 1.05861 1.20314 0.89411 1.00137 1.00200 1.24856 1.03184 1.00841 1.06978 1.83971 0.89912 1.31241 1.56459 1.23622 0.89844 1.02953 1.08018 1.42373 1.02476 1.25685 1.42637 0.72737 1.22200 0.96673 0.99418 0.84652 1.22504 1.00714 0.98747 0.96904 1.20218 0.90535 0.87421 0.95025 0.92903 1.42477 1.79054 1.07651 1.06935 1.19175 1.37583 0.93887 0.86544 0.91277 1.24705 1.02097 0.97184 0.96638 1.69634 1.51511 1.13140 1.23735 0.86312 0.77788 0.79223 0.83087 1.21293 1.21763 1.21360 0.92722 0.93631 0.91017 0.90329 0.89390 0.82830 0.83889 0.81381 0.90914 0.89285 0.93031 0.90609 0.78116 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.06 37.16 0.34 -1.79 16 2 C -0.11 -1.72 2.67 -90.50 -0.24 -1.96 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.96 5.42 -3.71 -0.02 1.94 16 5 N -0.59 -9.43 2.97 -174.37 -0.52 -9.95 16 6 C 0.58 9.56 7.61 -12.94 -0.10 9.47 16 7 O -0.53 -10.08 16.39 5.17 0.08 -10.00 16 8 C 0.01 0.11 6.28 -82.47 -0.52 -0.41 16 9 C -0.08 -1.10 10.70 -38.82 -0.42 -1.51 16 10 C -0.16 -2.02 6.80 -105.46 -0.72 -2.74 16 11 C -0.07 -0.69 10.42 -38.54 -0.40 -1.09 16 12 C -0.22 -1.94 11.03 28.84 0.32 -1.62 16 13 S 0.13 1.29 23.24 -107.50 -2.50 -1.21 16 14 C -0.02 -0.20 8.41 -15.05 -0.13 -0.32 16 15 N -0.52 -6.76 4.80 -7.94 -0.04 -6.80 16 16 H 0.43 5.07 6.48 -40.82 -0.26 4.81 16 17 C 0.09 1.42 5.28 -3.71 -0.02 1.40 16 18 C -0.15 -2.36 5.78 -26.61 -0.15 -2.51 16 19 C 0.18 3.20 2.53 -67.89 -0.17 3.03 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.72 -15.90 3.64 -53.38 -0.19 -16.10 16 22 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 26 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.29 7.54 -51.93 -0.39 0.90 16 33 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 34 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 35 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.07 0.97 3.90 -51.93 -0.20 0.77 16 39 H 0.09 1.55 7.74 -51.93 -0.40 1.14 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.38 9.11 5.93 -40.82 -0.24 8.87 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -29.57 356.72 -10.12 -39.69 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -5.56 Total: 13.10 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.48 Total: -4.74 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.03 Total: -58.52 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.57 -10.12 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036133914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.292 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds