Wall clock time and date at job start Tue Mar 31 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.49685 * 2 1 4 4 C 1.53195 * 109.52091 * 239.92170 * 2 1 3 5 5 N 1.46929 * 108.77369 * 185.39240 * 4 2 1 6 6 C 1.34775 * 120.63109 * 233.60741 * 5 4 2 7 7 O 1.21722 * 120.00170 * 359.81757 * 6 5 4 8 8 C 1.46494 * 119.99643 * 179.81931 * 6 5 4 9 9 C 1.36110 * 125.70850 * 209.46436 * 8 6 5 10 10 C 1.42227 * 107.62378 * 179.84907 * 9 8 6 11 11 C 1.45593 * 140.77917 * 180.09148 * 10 9 8 12 12 C 1.31810 * 114.63734 * 180.33438 * 11 10 9 13 13 S 1.75354 * 111.24053 * 0.03008 * 12 11 10 14 14 C 1.38168 * 106.99699 * 0.41201 * 10 9 8 15 15 N 1.37460 * 108.16673 * 359.75220 * 14 10 9 16 16 H 0.96999 * 125.68337 * 180.02562 * 15 14 10 17 17 C 1.46928 * 118.73443 * 53.61370 * 5 4 2 18 18 C 1.53193 * 108.77246 * 306.38651 * 17 5 4 19 19 C 1.53034 * 109.49774 * 120.06777 * 2 1 3 20 20 H 1.09004 * 109.46052 * 301.36687 * 19 2 1 21 21 N 1.46504 * 109.46136 * 61.33069 * 19 2 1 22 22 C 1.36940 * 119.99666 * 205.06577 * 21 19 2 23 23 H 1.07997 * 119.99958 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99569 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00406 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99994 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47088 * 59.99828 * 26 24 22 28 28 H 1.48498 * 109.47421 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46705 * 300.00270 * 26 24 22 30 30 H 1.08997 * 109.46813 * 299.93372 * 1 2 3 31 31 H 1.09005 * 109.47415 * 59.93298 * 1 2 3 32 32 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58667 * 305.18283 * 4 2 1 34 34 H 1.09004 * 109.58790 * 65.60908 * 4 2 1 35 35 H 1.08000 * 126.19098 * 359.97438 * 9 8 6 36 36 H 1.08004 * 122.68467 * 0.30859 * 11 10 9 37 37 H 1.07995 * 124.38211 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.58481 * 186.60027 * 17 5 4 39 39 H 1.08997 * 109.59069 * 66.17677 * 17 5 4 40 40 H 1.08996 * 109.49871 * 294.68156 * 18 17 5 41 41 H 1.09006 * 109.49513 * 174.58704 * 18 17 5 42 42 H 0.96994 * 119.99944 * 25.06393 * 21 19 2 43 43 H 0.97003 * 120.00169 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0419 -0.7237 -1.2495 5 7 3.5053 -0.8282 -1.1691 6 6 4.2818 -0.3848 -2.1775 7 8 3.7718 0.1050 -3.1683 8 6 5.7396 -0.4923 -2.0811 9 6 6.6384 0.3469 -2.6646 10 6 7.9405 -0.1088 -2.3187 11 6 9.3433 0.2199 -2.5285 12 6 10.1932 -0.5986 -1.9411 13 16 9.3538 -1.8650 -1.0656 14 6 7.7793 -1.2330 -1.5318 15 7 6.4322 -1.4657 -1.3878 16 1 6.0342 -2.1922 -0.8831 17 6 4.1059 -1.4255 0.0314 18 6 3.5708 -0.6940 1.2664 19 6 2.0408 -0.7228 1.2485 20 1 1.6577 -0.2243 2.1389 21 7 1.5790 -2.1130 1.2309 22 6 1.4476 -2.8057 2.4048 23 1 1.6840 -2.3270 3.3436 24 6 1.0096 -4.1227 2.3881 25 7 0.7210 -4.7060 1.2441 26 14 0.8296 -5.0675 3.9896 27 1 -0.1493 -4.3749 4.8656 28 1 0.3502 -6.4432 3.7016 29 1 2.1454 -5.1356 4.6746 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6063 -1.7217 -1.2979 34 1 1.7643 -0.1579 -2.1389 35 1 6.4050 1.2049 -3.2776 36 1 9.6620 1.0665 -3.1186 37 1 11.2676 -0.5023 -1.9930 38 1 5.1902 -1.3229 -0.0129 39 1 3.8387 -2.4807 0.0874 40 1 3.9155 0.3400 1.2546 41 1 3.9334 -1.1885 2.1677 42 1 1.3664 -2.5428 0.3877 43 1 0.4153 -5.6265 1.2324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036133914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:06 Heat of formation + Delta-G solvation = 48.192785 kcal Electronic energy + Delta-G solvation = -26637.325119 eV Core-core repulsion = 23003.025530 eV Total energy + Delta-G solvation = -3634.299589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.65076 -40.90834 -39.10866 -36.51370 -35.83925 -34.48393 -33.07373 -31.65207 -30.98057 -29.90644 -27.56491 -26.71306 -25.44816 -24.02224 -23.34752 -23.12610 -21.27230 -20.43445 -20.28051 -19.35730 -19.09526 -17.87295 -17.15515 -16.77242 -16.52759 -16.11402 -15.91450 -15.68486 -15.48771 -15.37079 -15.05042 -14.92200 -14.54277 -14.38788 -14.21377 -13.74695 -13.63464 -13.11163 -13.02729 -12.86534 -12.78795 -12.71794 -12.57057 -12.43824 -12.18238 -12.01684 -11.95433 -11.72888 -11.61768 -11.29457 -11.19252 -10.87613 -10.55378 -9.78833 -9.27346 -8.95413 -8.65423 -7.90580 -5.17166 0.07980 0.24556 0.44852 1.09701 1.49073 1.49999 1.55782 1.67102 1.74814 2.06962 2.32119 2.58167 3.25837 3.42802 3.72504 3.79929 3.82419 3.89652 4.01145 4.03597 4.20262 4.30293 4.36833 4.48082 4.50819 4.63942 4.66186 4.76816 4.78423 4.86780 4.97048 5.08128 5.11482 5.15649 5.18822 5.24798 5.28038 5.41907 5.44339 5.54581 5.59339 5.66575 6.03864 6.22681 6.30839 6.87844 7.38949 8.13971 8.38169 9.32116 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.003459 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.500480 B = 8092.931747 C = 9615.696417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.585 3.415 7 O -0.564 6.564 8 C -0.015 4.015 9 C -0.081 4.081 10 C -0.174 4.174 11 C -0.084 4.084 12 C -0.209 4.209 13 S 0.145 5.855 14 C -0.031 4.031 15 N -0.525 5.525 16 H 0.429 0.571 17 C 0.102 3.898 18 C -0.140 4.140 19 C 0.173 3.827 20 H 0.050 0.950 21 N -0.724 5.724 22 C -0.229 4.229 23 H 0.075 0.925 24 C -0.070 4.070 25 N -0.967 5.967 26 Si 0.962 3.038 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.203 0.797 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.374 0.626 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.690 10.860 -5.102 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.002 3.998 5 N -0.324 5.324 6 C 0.374 3.626 7 O -0.444 6.444 8 C -0.128 4.128 9 C -0.109 4.109 10 C -0.187 4.187 11 C -0.114 4.114 12 C -0.343 4.343 13 S 0.398 5.602 14 C -0.259 4.259 15 N -0.134 5.134 16 H 0.274 0.726 17 C -0.020 4.020 18 C -0.181 4.181 19 C 0.065 3.935 20 H 0.068 0.932 21 N -0.365 5.365 22 C -0.361 4.361 23 H 0.093 0.907 24 C -0.262 4.262 25 N -0.618 5.618 26 Si 0.793 3.207 27 H -0.209 1.209 28 H -0.229 1.229 29 H -0.206 1.206 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.220 0.780 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.208 0.792 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.750 9.763 -4.507 20.753 hybrid contribution -1.343 -0.417 0.045 1.407 sum 16.407 9.346 -4.462 19.402 Atomic orbital electron populations 1.21599 0.93745 1.01614 1.01949 1.21640 0.96822 0.99363 0.94014 0.89504 1.21613 0.78122 1.00726 0.99383 1.48069 1.07296 1.59173 1.17868 1.17270 0.84834 0.77986 0.82502 1.90806 1.74391 1.47483 1.31681 1.19776 0.91099 0.96558 1.05365 1.20865 0.88964 1.00380 1.00695 1.19725 0.94695 0.98432 1.05798 1.20553 0.88008 1.01543 1.01309 1.25314 1.04684 0.99226 1.05063 1.84015 0.88260 1.31592 1.56304 1.24099 0.90252 1.03442 1.08151 1.42258 1.02839 1.25537 1.42755 0.72597 1.22101 0.97956 0.97797 0.84195 1.22383 0.98844 1.00023 0.96848 1.20421 0.91822 0.85322 0.95974 0.93177 1.42571 1.79147 1.09153 1.05620 1.19522 1.35087 0.93862 0.87675 0.90712 1.25360 1.03426 0.98404 0.99029 1.69788 1.53695 1.12875 1.25488 0.85377 0.77841 0.77395 0.80102 1.20908 1.22913 1.20567 0.92110 0.91504 0.94049 0.92541 0.89214 0.82069 0.81441 0.77969 0.88698 0.91740 0.90898 0.91178 0.79246 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.06 71.98 0.65 -3.36 16 2 C -0.10 -3.05 2.67 -10.72 -0.03 -3.08 16 3 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 4 C 0.12 4.09 5.42 86.36 0.47 4.56 16 5 N -0.59 -18.84 2.97 -823.79 -2.45 -21.29 16 6 C 0.59 19.20 7.61 86.39 0.66 19.85 16 7 O -0.56 -21.43 16.39 -4.42 -0.07 -21.50 16 8 C -0.02 -0.43 6.28 39.81 0.25 -0.18 16 9 C -0.08 -2.11 10.70 22.77 0.24 -1.86 16 10 C -0.17 -4.04 6.80 -20.41 -0.14 -4.18 16 11 C -0.08 -1.39 10.42 23.39 0.24 -1.15 16 12 C -0.21 -2.85 11.03 67.05 0.74 -2.11 16 13 S 0.14 2.51 23.24 -56.49 -1.31 1.20 16 14 C -0.03 -0.73 8.41 83.79 0.70 -0.03 16 15 N -0.52 -13.24 4.80 -179.05 -0.86 -14.09 16 16 H 0.43 10.09 6.48 -92.71 -0.60 9.49 16 17 C 0.10 3.10 5.28 86.36 0.46 3.55 16 18 C -0.14 -4.32 5.78 30.67 0.18 -4.15 16 19 C 0.17 6.12 2.53 45.02 0.11 6.24 16 20 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 21 N -0.72 -32.47 3.64 -322.81 -1.18 -33.65 16 22 C -0.23 -11.66 9.93 84.03 0.83 -10.83 16 23 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 24 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 25 N -0.97 -56.37 13.06 21.65 0.28 -56.09 16 26 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 29 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.04 1.51 7.54 -2.39 -0.02 1.50 16 33 H 0.06 2.13 6.64 -2.39 -0.02 2.11 16 34 H 0.09 2.94 7.00 -2.38 -0.02 2.93 16 35 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.10 2.47 3.90 -2.39 -0.01 2.46 16 39 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.37 18.37 5.93 -92.71 -0.55 17.82 16 43 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -64.10 356.72 2.19 -61.91 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.09 Total: 37.22 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.84 Total: -0.02 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -4.20 Total: -125.12 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.31 Total: 1.20 kcal Total: -64.10 2.19 -61.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036133914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.104 kcal (2) G-P(sol) polarization free energy of solvation -64.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds