Wall clock time and date at job start Tue Mar 31 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52401 * 2 1 4 4 C 1.53196 * 109.49493 * 239.91970 * 2 1 3 5 5 N 1.46923 * 108.77412 * 185.41425 * 4 2 1 6 6 C 1.34778 * 120.63145 * 233.63071 * 5 4 2 7 7 O 1.21720 * 119.99968 * 359.79723 * 6 5 4 8 8 C 1.46491 * 120.00159 * 179.78830 * 6 5 4 9 9 C 1.36106 * 125.71520 * 209.47945 * 8 6 5 10 10 C 1.42225 * 107.63051 * 179.85278 * 9 8 6 11 11 C 1.45592 * 140.78377 * 180.09038 * 10 9 8 12 12 C 1.31814 * 114.63624 * 180.33306 * 11 10 9 13 13 S 1.75353 * 111.24339 * 0.03283 * 12 11 10 14 14 C 1.38178 * 106.99185 * 0.41282 * 10 9 8 15 15 N 1.37462 * 108.16820 * 359.75144 * 14 10 9 16 16 H 0.96995 * 125.68359 * 180.02562 * 15 14 10 17 17 C 1.46931 * 118.73740 * 53.61035 * 5 4 2 18 18 C 1.53185 * 108.77552 * 306.39015 * 17 5 4 19 19 C 1.53039 * 109.49616 * 120.08840 * 2 1 3 20 20 H 1.08996 * 109.46408 * 61.29336 * 19 2 1 21 21 N 1.46505 * 109.45882 * 301.33066 * 19 2 1 22 22 C 1.36931 * 119.99923 * 154.93202 * 21 19 2 23 23 H 1.08005 * 120.00251 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99973 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00052 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99883 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47185 * 60.00747 * 26 24 22 28 28 H 1.48508 * 109.46980 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47383 * 300.00384 * 26 24 22 30 30 H 1.09003 * 109.46670 * 299.91295 * 1 2 3 31 31 H 1.08994 * 109.47427 * 59.91589 * 1 2 3 32 32 H 1.09006 * 109.47069 * 179.91779 * 1 2 3 33 33 H 1.09000 * 109.58588 * 65.62692 * 4 2 1 34 34 H 1.08996 * 109.70883 * 305.27168 * 4 2 1 35 35 H 1.08009 * 126.18613 * 359.97438 * 9 8 6 36 36 H 1.07999 * 122.68174 * 0.31273 * 11 10 9 37 37 H 1.07994 * 124.37686 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.58114 * 186.60403 * 17 5 4 39 39 H 1.08999 * 109.58283 * 66.18375 * 17 5 4 40 40 H 1.08999 * 109.50197 * 294.68377 * 18 17 5 41 41 H 1.09005 * 109.52150 * 174.60639 * 18 17 5 42 42 H 0.97005 * 119.99967 * 334.93692 * 21 19 2 43 43 H 0.96997 * 120.00653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8292 -1.1697 6 6 4.2811 -0.3856 -2.1780 7 8 3.7712 0.1045 -3.1686 8 6 5.7389 -0.4933 -2.0817 9 6 6.6378 0.3460 -2.6648 10 6 7.9399 -0.1100 -2.3193 11 6 9.3427 0.2186 -2.5290 12 6 10.1925 -0.6003 -1.9420 13 16 9.3530 -1.8670 -1.0671 14 6 7.7784 -1.2346 -1.5329 15 7 6.4313 -1.4672 -1.3889 16 1 6.0333 -2.1938 -0.8846 17 6 4.1052 -1.4268 0.0307 18 6 3.5708 -0.6952 1.2659 19 6 2.0408 -0.7232 1.2483 20 1 1.6967 -1.7574 1.2351 21 7 1.5266 -0.0531 2.4453 22 6 1.3951 -0.7498 3.6168 23 1 1.6709 -1.7932 3.6584 24 6 0.9084 -0.1148 4.7511 25 7 0.5728 1.1568 4.7005 26 14 0.7297 -1.0650 6.3494 27 1 2.0572 -1.5815 6.7693 28 1 0.1923 -0.1661 7.4023 29 1 -0.2028 -2.2029 6.1473 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7637 -0.1579 -2.1389 34 1 1.6054 -1.7215 -1.3007 35 1 6.4044 1.2044 -3.2775 36 1 9.6614 1.0654 -3.1186 37 1 11.2669 -0.5041 -1.9940 38 1 5.1895 -1.3247 -0.0139 39 1 3.8375 -2.4820 0.0865 40 1 3.9159 0.3387 1.2541 41 1 3.9334 -1.1894 2.1673 42 1 1.2792 0.8841 2.4080 43 1 0.2323 1.6006 5.4930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036133915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:13 Heat of formation + Delta-G solvation = 63.039511 kcal Electronic energy + Delta-G solvation = -26193.662208 eV Core-core repulsion = 22560.006422 eV Total energy + Delta-G solvation = -3633.655786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.71526 -39.72079 -37.70588 -35.69718 -34.67809 -32.92675 -31.59925 -30.75049 -29.49846 -28.91776 -26.41129 -25.25818 -23.57100 -22.95183 -22.16541 -21.69595 -20.36499 -19.71966 -19.54439 -18.35371 -17.16482 -16.83699 -16.07700 -15.61593 -15.31552 -14.96619 -14.82194 -14.50997 -14.31697 -13.92988 -13.83949 -13.59721 -13.37342 -13.06423 -12.95094 -12.51445 -12.40663 -12.10174 -11.99981 -11.69493 -11.60141 -11.24653 -11.05183 -10.99626 -10.87574 -10.72903 -10.48378 -10.28165 -10.12294 -9.81529 -9.72077 -9.66720 -8.96909 -8.68980 -8.46572 -7.87788 -7.03348 -5.82980 -3.12293 0.84068 1.11385 1.26408 1.75693 2.61514 2.77172 2.92004 3.30149 3.38446 3.43295 3.44528 4.24354 4.52082 4.56253 4.77774 4.79374 5.13198 5.16189 5.17235 5.19880 5.31953 5.40137 5.45448 5.50475 5.60449 5.67518 5.84874 5.87483 5.96177 6.01352 6.04732 6.20191 6.20973 6.27949 6.35826 6.42591 6.50256 6.52744 6.70779 6.85012 6.90306 6.96324 7.29689 7.61792 8.00449 8.34905 9.46408 10.03092 10.38025 11.39291 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002999 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.144955 B = 9334.163433 C =10788.493416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.071 0.929 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.586 3.414 7 O -0.529 6.529 8 C 0.003 3.997 9 C -0.076 4.076 10 C -0.160 4.160 11 C -0.069 4.069 12 C -0.223 4.223 13 S 0.131 5.869 14 C -0.015 4.015 15 N -0.525 5.525 16 H 0.425 0.575 17 C 0.086 3.914 18 C -0.150 4.150 19 C 0.185 3.815 20 H 0.048 0.952 21 N -0.719 5.719 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.761 -5.708 -14.749 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.374 3.626 7 O -0.406 6.406 8 C -0.109 4.109 9 C -0.104 4.104 10 C -0.173 4.173 11 C -0.100 4.100 12 C -0.357 4.357 13 S 0.385 5.615 14 C -0.244 4.244 15 N -0.134 5.134 16 H 0.269 0.731 17 C -0.038 4.038 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.359 5.359 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.187 0.813 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.219 0.781 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.789 -6.859 -14.199 22.315 hybrid contribution -0.655 0.631 0.586 1.082 sum 15.134 -6.228 -13.613 21.287 Atomic orbital electron populations 1.21657 0.93891 1.01816 1.02002 1.21753 0.96753 1.00150 0.94393 0.91055 1.21789 0.77469 1.01135 0.99739 1.48103 1.07596 1.59920 1.17605 1.17037 0.84023 0.78544 0.83036 1.90847 1.73570 1.45433 1.30768 1.19989 0.91968 0.95295 1.03686 1.20680 0.88466 1.00255 1.01017 1.19367 0.93788 0.98341 1.05781 1.20332 0.89373 1.00117 1.00184 1.24861 1.03245 1.00779 1.06817 1.83941 0.89800 1.31225 1.56583 1.23632 0.89787 1.03042 1.07914 1.42272 1.02497 1.25704 1.42948 0.73061 1.22348 0.97949 0.97780 0.85736 1.22685 1.00677 1.00529 0.95227 1.20180 0.90072 0.95757 0.86584 0.93378 1.42389 1.76419 1.11412 1.05720 1.19152 1.36359 0.94041 0.87744 0.91323 1.24732 1.01912 0.95997 0.98052 1.69639 1.49701 1.09457 1.29084 0.86301 0.77743 0.78738 0.83569 1.21311 1.21695 1.21276 0.90654 0.93687 0.93025 0.88984 0.91252 0.82713 0.83776 0.81294 0.90218 0.91023 0.91914 0.90428 0.78141 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.03 37.16 0.34 -1.80 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.68 5.72 -3.71 -0.02 1.66 16 5 N -0.60 -8.24 2.97 -174.38 -0.52 -8.76 16 6 C 0.59 8.67 7.61 -12.94 -0.10 8.58 16 7 O -0.53 -9.25 16.39 5.17 0.08 -9.16 16 8 C 0.00 0.04 6.28 -82.47 -0.52 -0.47 16 9 C -0.08 -0.97 10.70 -38.82 -0.42 -1.39 16 10 C -0.16 -1.88 6.80 -105.46 -0.72 -2.60 16 11 C -0.07 -0.64 10.42 -38.55 -0.40 -1.04 16 12 C -0.22 -1.78 11.03 28.84 0.32 -1.46 16 13 S 0.13 1.16 23.24 -107.50 -2.50 -1.34 16 14 C -0.02 -0.17 8.41 -15.05 -0.13 -0.30 16 15 N -0.53 -5.84 4.80 -7.94 -0.04 -5.88 16 16 H 0.43 3.86 6.48 -40.82 -0.26 3.59 16 17 C 0.09 1.06 5.53 -3.71 -0.02 1.04 16 18 C -0.15 -2.42 5.66 -26.61 -0.15 -2.58 16 19 C 0.18 3.36 2.19 -67.89 -0.15 3.21 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.72 -16.84 4.41 -53.38 -0.24 -17.08 16 22 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 23 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 26 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.08 0.89 3.90 -51.93 -0.20 0.69 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.38 9.79 7.51 -40.82 -0.31 9.48 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -31.20 360.65 -10.22 -41.41 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.71 Total: 11.27 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.43 Total: -6.01 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.07 Total: -58.29 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.50 Total: -1.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.20 -10.22 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036133915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.452 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds