Wall clock time and date at job start Tue Mar 31 2020 18:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52401 * 2 1 4 4 C 1.53196 * 109.49493 * 239.91970 * 2 1 3 5 5 N 1.46923 * 108.77412 * 185.41425 * 4 2 1 6 6 C 1.34778 * 120.63145 * 233.63071 * 5 4 2 7 7 O 1.21720 * 119.99968 * 359.79723 * 6 5 4 8 8 C 1.46491 * 120.00159 * 179.78830 * 6 5 4 9 9 C 1.36106 * 125.71520 * 209.47945 * 8 6 5 10 10 C 1.42225 * 107.63051 * 179.85278 * 9 8 6 11 11 C 1.45592 * 140.78377 * 180.09038 * 10 9 8 12 12 C 1.31814 * 114.63624 * 180.33306 * 11 10 9 13 13 S 1.75353 * 111.24339 * 0.03283 * 12 11 10 14 14 C 1.38178 * 106.99185 * 0.41282 * 10 9 8 15 15 N 1.37462 * 108.16820 * 359.75144 * 14 10 9 16 16 H 0.96995 * 125.68359 * 180.02562 * 15 14 10 17 17 C 1.46931 * 118.73740 * 53.61035 * 5 4 2 18 18 C 1.53185 * 108.77552 * 306.39015 * 17 5 4 19 19 C 1.53039 * 109.49616 * 120.08840 * 2 1 3 20 20 H 1.08996 * 109.46408 * 61.29336 * 19 2 1 21 21 N 1.46505 * 109.45882 * 301.33066 * 19 2 1 22 22 C 1.36931 * 119.99923 * 154.93202 * 21 19 2 23 23 H 1.08005 * 120.00251 * 0.02562 * 22 21 19 24 24 C 1.38814 * 119.99973 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00052 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99883 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47185 * 60.00747 * 26 24 22 28 28 H 1.48508 * 109.46980 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47383 * 300.00384 * 26 24 22 30 30 H 1.09003 * 109.46670 * 299.91295 * 1 2 3 31 31 H 1.08994 * 109.47427 * 59.91589 * 1 2 3 32 32 H 1.09006 * 109.47069 * 179.91779 * 1 2 3 33 33 H 1.09000 * 109.58588 * 65.62692 * 4 2 1 34 34 H 1.08996 * 109.70883 * 305.27168 * 4 2 1 35 35 H 1.08009 * 126.18613 * 359.97438 * 9 8 6 36 36 H 1.07999 * 122.68174 * 0.31273 * 11 10 9 37 37 H 1.07994 * 124.37686 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.58114 * 186.60403 * 17 5 4 39 39 H 1.08999 * 109.58283 * 66.18375 * 17 5 4 40 40 H 1.08999 * 109.50197 * 294.68377 * 18 17 5 41 41 H 1.09005 * 109.52150 * 174.60639 * 18 17 5 42 42 H 0.97005 * 119.99967 * 334.93692 * 21 19 2 43 43 H 0.96997 * 120.00653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8292 -1.1697 6 6 4.2811 -0.3856 -2.1780 7 8 3.7712 0.1045 -3.1686 8 6 5.7389 -0.4933 -2.0817 9 6 6.6378 0.3460 -2.6648 10 6 7.9399 -0.1100 -2.3193 11 6 9.3427 0.2186 -2.5290 12 6 10.1925 -0.6003 -1.9420 13 16 9.3530 -1.8670 -1.0671 14 6 7.7784 -1.2346 -1.5329 15 7 6.4313 -1.4672 -1.3889 16 1 6.0333 -2.1938 -0.8846 17 6 4.1052 -1.4268 0.0307 18 6 3.5708 -0.6952 1.2659 19 6 2.0408 -0.7232 1.2483 20 1 1.6967 -1.7574 1.2351 21 7 1.5266 -0.0531 2.4453 22 6 1.3951 -0.7498 3.6168 23 1 1.6709 -1.7932 3.6584 24 6 0.9084 -0.1148 4.7511 25 7 0.5728 1.1568 4.7005 26 14 0.7297 -1.0650 6.3494 27 1 2.0572 -1.5815 6.7693 28 1 0.1923 -0.1661 7.4023 29 1 -0.2028 -2.2029 6.1473 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7637 -0.1579 -2.1389 34 1 1.6054 -1.7215 -1.3007 35 1 6.4044 1.2044 -3.2775 36 1 9.6614 1.0654 -3.1186 37 1 11.2669 -0.5041 -1.9940 38 1 5.1895 -1.3247 -0.0139 39 1 3.8375 -2.4820 0.0865 40 1 3.9159 0.3387 1.2541 41 1 3.9334 -1.1894 2.1673 42 1 1.2792 0.8841 2.4080 43 1 0.2323 1.6006 5.4930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036133915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:12 Heat of formation + Delta-G solvation = 44.537273 kcal Electronic energy + Delta-G solvation = -26194.464525 eV Core-core repulsion = 22560.006422 eV Total energy + Delta-G solvation = -3634.458103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.64990 -40.85032 -39.03638 -36.58974 -36.08441 -34.46892 -33.13525 -31.67846 -31.11708 -29.89079 -27.57931 -26.80672 -24.98209 -23.87779 -23.28984 -23.04824 -21.34506 -21.01829 -20.39285 -19.41416 -19.01563 -17.91880 -17.17679 -16.80885 -16.64540 -16.07541 -15.73596 -15.66579 -15.48379 -15.33456 -15.21923 -14.94294 -14.53281 -14.36261 -14.00633 -13.78052 -13.67394 -13.25781 -13.03006 -12.85536 -12.81533 -12.76055 -12.52650 -12.50131 -12.21404 -12.11374 -11.87682 -11.75120 -11.69621 -11.31809 -11.19922 -10.87314 -10.55608 -9.86279 -9.27828 -8.98478 -8.64571 -7.91985 -5.20008 0.06826 0.24392 0.43594 1.07918 1.48122 1.50019 1.55966 1.61751 1.75511 2.06845 2.32001 2.57217 3.25533 3.40733 3.69606 3.75055 3.80063 3.86030 3.97837 4.02362 4.17636 4.27137 4.36756 4.46142 4.55215 4.63572 4.68506 4.73741 4.76258 4.77091 4.87897 4.96435 5.09709 5.17368 5.19869 5.27519 5.34549 5.42635 5.45454 5.53659 5.57019 5.64144 6.07560 6.18398 6.28987 6.86482 7.35671 8.11309 8.34452 9.31383 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002999 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.144955 B = 9334.163433 C =10788.493416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.051 0.949 4 C 0.127 3.873 5 N -0.599 5.599 6 C 0.587 3.413 7 O -0.562 6.562 8 C -0.014 4.014 9 C -0.088 4.088 10 C -0.178 4.178 11 C -0.088 4.088 12 C -0.212 4.212 13 S 0.155 5.845 14 C -0.028 4.028 15 N -0.520 5.520 16 H 0.434 0.566 17 C 0.095 3.905 18 C -0.140 4.140 19 C 0.180 3.820 20 H 0.054 0.946 21 N -0.731 5.731 22 C -0.233 4.233 23 H 0.079 0.921 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.278 1.278 28 H -0.301 1.301 29 H -0.278 1.278 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.202 0.798 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.370 0.630 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.852 -7.841 -15.399 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.070 0.930 4 C 0.005 3.995 5 N -0.330 5.330 6 C 0.376 3.624 7 O -0.441 6.441 8 C -0.127 4.127 9 C -0.116 4.116 10 C -0.191 4.191 11 C -0.118 4.118 12 C -0.345 4.345 13 S 0.408 5.592 14 C -0.257 4.257 15 N -0.130 5.130 16 H 0.279 0.721 17 C -0.028 4.028 18 C -0.182 4.182 19 C 0.072 3.928 20 H 0.072 0.928 21 N -0.370 5.370 22 C -0.364 4.364 23 H 0.097 0.903 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.798 3.202 27 H -0.204 1.204 28 H -0.228 1.228 29 H -0.204 1.204 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.219 0.781 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.202 0.798 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.909 -9.054 -14.867 24.975 hybrid contribution -1.187 1.281 0.715 1.887 sum 16.723 -7.773 -14.152 23.245 Atomic orbital electron populations 1.21571 0.93630 1.02216 1.01313 1.21620 0.96921 0.99088 0.94473 0.93010 1.21720 0.77747 1.01965 0.98086 1.48130 1.07498 1.59659 1.17717 1.17225 0.84694 0.77775 0.82668 1.90822 1.74326 1.46918 1.32054 1.19746 0.91154 0.96571 1.05213 1.20878 0.89296 1.00407 1.00982 1.19712 0.94572 0.98699 1.06080 1.20554 0.88274 1.01495 1.01431 1.25313 1.04682 0.99462 1.05053 1.83929 0.87965 1.31111 1.56161 1.24075 0.90461 1.03310 1.07829 1.42132 1.02515 1.25535 1.42774 0.72081 1.22364 0.98697 0.98544 0.83220 1.22460 0.98895 0.99811 0.96986 1.20418 0.91207 0.95629 0.85571 0.92826 1.42579 1.76813 1.10844 1.06736 1.19563 1.33977 0.94436 0.88471 0.90308 1.25496 1.03113 0.96875 1.01317 1.69808 1.51898 1.11132 1.29357 0.85292 0.77906 0.77369 0.79675 1.20417 1.22799 1.20426 0.94085 0.91585 0.92026 0.89236 0.88962 0.82624 0.81858 0.78129 0.88673 0.88023 0.94055 0.91137 0.79812 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.03 71.98 0.65 -3.38 16 2 C -0.10 -3.19 2.46 -10.71 -0.03 -3.22 16 3 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.13 3.35 5.72 86.36 0.49 3.85 16 5 N -0.60 -15.64 2.97 -823.82 -2.45 -18.08 16 6 C 0.59 17.03 7.61 86.39 0.66 17.69 16 7 O -0.56 -19.62 16.39 -4.41 -0.07 -19.69 16 8 C -0.01 -0.36 6.28 39.81 0.25 -0.11 16 9 C -0.09 -2.20 10.70 22.76 0.24 -1.95 16 10 C -0.18 -3.95 6.80 -20.41 -0.14 -4.09 16 11 C -0.09 -1.42 10.42 23.39 0.24 -1.17 16 12 C -0.21 -2.70 11.03 67.04 0.74 -1.96 16 13 S 0.15 2.31 23.24 -56.49 -1.31 1.00 16 14 C -0.03 -0.59 8.41 83.80 0.70 0.12 16 15 N -0.52 -10.74 4.80 -179.04 -0.86 -11.59 16 16 H 0.43 6.91 6.48 -92.71 -0.60 6.30 16 17 C 0.09 2.17 5.53 86.36 0.48 2.64 16 18 C -0.14 -4.44 5.66 30.67 0.17 -4.27 16 19 C 0.18 6.47 2.19 45.02 0.10 6.57 16 20 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 21 N -0.73 -34.76 4.41 -322.81 -1.42 -36.19 16 22 C -0.23 -12.21 9.93 84.04 0.83 -11.37 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 26 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 30 H 0.04 1.56 7.36 -2.39 -0.02 1.54 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.77 8.14 -2.38 -0.02 1.76 16 33 H 0.09 2.48 7.00 -2.39 -0.02 2.47 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.10 1.94 3.90 -2.39 -0.01 1.93 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.37 19.58 7.51 -92.70 -0.70 18.88 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -68.74 360.65 1.82 -66.91 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.24 Total: 33.40 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 5.87 Total: -4.42 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -4.45 Total: -124.17 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.07 Total: -19.69 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -68.74 1.82 -66.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036133915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.451 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds