Wall clock time and date at job start Tue Mar 31 2020 18:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.51922 * 2 1 4 4 C 1.53190 * 109.49354 * 239.92396 * 2 1 3 5 5 N 1.46928 * 108.89303 * 185.48371 * 4 2 1 6 6 C 1.34779 * 120.63069 * 233.51760 * 5 4 2 7 7 O 1.21729 * 119.99791 * 359.80029 * 6 5 4 8 8 C 1.46450 * 119.99970 * 179.81037 * 6 5 4 9 9 C 1.37469 * 125.80503 * 209.50426 * 8 6 5 10 10 C 1.40653 * 107.55331 * 179.84024 * 9 8 6 11 11 S 1.76021 * 142.39531 * 180.02562 * 10 9 8 12 12 C 1.75595 * 91.31356 * 180.37435 * 11 10 9 13 13 C 1.32767 * 110.47025 * 0.02562 * 12 11 10 14 14 C 1.38249 * 108.03619 * 0.41796 * 10 9 8 15 15 N 1.37923 * 125.80698 * 29.80579 * 8 6 5 16 16 H 0.97001 * 125.68058 * 359.96084 * 15 8 6 17 17 C 1.46929 * 118.73762 * 53.53092 * 5 4 2 18 18 C 1.53193 * 108.77615 * 306.39554 * 17 5 4 19 19 C 1.53038 * 109.31104 * 54.63768 * 18 17 5 20 20 H 1.08997 * 109.46734 * 58.63708 * 19 18 17 21 21 N 1.46499 * 109.45775 * 178.61224 * 19 18 17 22 22 C 1.36935 * 120.00240 * 275.00037 * 21 19 18 23 23 H 1.08001 * 119.99638 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00036 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00304 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99784 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47256 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47142 * 119.99721 * 26 24 22 29 29 H 1.48511 * 109.46696 * 239.99687 * 26 24 22 30 30 H 1.08996 * 109.47437 * 180.08290 * 1 2 3 31 31 H 1.09001 * 109.47111 * 300.07824 * 1 2 3 32 32 H 1.08996 * 109.47610 * 60.07616 * 1 2 3 33 33 H 1.09004 * 109.59125 * 65.62514 * 4 2 1 34 34 H 1.09001 * 109.58633 * 305.33701 * 4 2 1 35 35 H 1.07998 * 126.22080 * 359.97438 * 9 8 6 36 36 H 1.08005 * 124.76464 * 179.97438 * 12 11 10 37 37 H 1.08008 * 122.15993 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.58222 * 66.18521 * 17 5 4 39 39 H 1.09000 * 109.58352 * 186.46436 * 17 5 4 40 40 H 1.09000 * 109.49467 * 174.58248 * 18 17 5 41 41 H 1.08998 * 109.49738 * 294.65064 * 18 17 5 42 42 H 0.97010 * 120.00190 * 94.99686 * 21 19 18 43 43 H 0.97001 * 119.99939 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5044 -0.8320 -1.1716 6 6 4.2805 -0.3914 -2.1816 7 8 3.7701 0.0986 -3.1722 8 6 5.7377 -0.5024 -2.0875 9 6 6.6483 0.3416 -2.6775 10 6 7.9339 -0.1150 -2.3350 11 16 9.6441 0.2345 -2.5613 12 6 10.0982 -1.1507 -1.5823 13 6 9.0168 -1.7868 -1.1481 14 6 7.7919 -1.2410 -1.5456 15 7 6.4299 -1.4749 -1.3966 16 1 6.0325 -2.2006 -0.8904 17 6 4.1055 -1.4300 0.0283 18 6 3.5742 -0.6965 1.2638 19 6 2.0441 -0.7216 1.2482 20 1 1.6978 -1.7550 1.2360 21 7 1.5328 -0.0497 2.4455 22 6 1.4016 -0.7453 3.6177 23 1 1.6747 -1.7893 3.6594 24 6 0.9166 -0.1088 4.7519 25 7 0.5834 1.1635 4.7009 26 14 0.7370 -1.0579 6.3508 27 1 1.1759 -2.4616 6.1452 28 1 1.5767 -0.4249 7.3993 29 1 -0.6850 -1.0420 6.7788 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3634 0.5126 -0.8906 33 1 1.7636 -0.1578 -2.1390 34 1 1.6032 -1.7206 -1.2994 35 1 6.4184 1.2005 -3.2906 36 1 11.1145 -1.4444 -1.3648 37 1 9.0789 -2.6689 -0.5278 38 1 3.8357 -2.4846 0.0853 39 1 5.1901 -1.3324 -0.0189 40 1 3.9369 -1.1914 2.1647 41 1 3.9218 0.3365 1.2511 42 1 1.2872 0.8881 2.4079 43 1 0.2448 1.6084 5.4936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036246068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:19 Heat of formation + Delta-G solvation = 62.034875 kcal Electronic energy + Delta-G solvation = -26215.296805 eV Core-core repulsion = 22581.597454 eV Total energy + Delta-G solvation = -3633.699350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73541 -39.77611 -37.72530 -35.61701 -34.71826 -32.96295 -31.62453 -31.16876 -29.51805 -28.69148 -26.39793 -25.24010 -23.66523 -22.94415 -22.12796 -21.69454 -20.84733 -19.79648 -19.26854 -18.11624 -17.15648 -16.77017 -16.07636 -15.70252 -15.51432 -15.04964 -14.55975 -14.46642 -14.30509 -13.97295 -13.85032 -13.64862 -13.38914 -13.06707 -13.03593 -12.52196 -12.41494 -12.10596 -11.98985 -11.69568 -11.57624 -11.25050 -11.05503 -11.01674 -10.89000 -10.74099 -10.49455 -10.22337 -10.13037 -9.92776 -9.81036 -9.70000 -8.98205 -8.70337 -8.26307 -7.87640 -7.03652 -5.83810 -3.13043 0.57631 1.32188 1.78723 1.86650 2.53503 2.56923 2.81800 3.23741 3.37381 3.42783 3.45446 4.33999 4.51140 4.52460 4.75273 4.79745 5.11807 5.13313 5.15894 5.17234 5.23009 5.39452 5.44043 5.51408 5.59986 5.64740 5.74386 5.76626 5.84668 5.99176 6.03635 6.19734 6.23761 6.26120 6.34929 6.37623 6.48806 6.52385 6.70329 6.84715 6.95422 7.04217 7.28955 7.62213 7.99242 8.34074 9.45759 10.02502 10.37308 11.38560 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.002898 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.421159 B = 9658.760143 C =10972.026757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.585 3.415 7 O -0.528 6.528 8 C 0.020 3.980 9 C -0.080 4.080 10 C -0.215 4.215 11 S 0.127 5.873 12 C -0.191 4.191 13 C -0.112 4.112 14 C 0.057 3.943 15 N -0.541 5.541 16 H 0.424 0.576 17 C 0.085 3.915 18 C -0.149 4.149 19 C 0.185 3.815 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.691 -6.208 -14.529 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.372 3.628 7 O -0.405 6.405 8 C -0.094 4.094 9 C -0.110 4.110 10 C -0.335 4.335 11 S 0.387 5.613 12 C -0.327 4.327 13 C -0.146 4.146 14 C -0.061 4.061 15 N -0.149 5.149 16 H 0.268 0.732 17 C -0.039 4.039 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.189 0.811 37 H 0.159 0.841 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.077 -5.120 -15.567 22.957 hybrid contribution -1.018 -1.658 2.215 2.948 sum 15.060 -6.777 -13.352 21.237 Atomic orbital electron populations 1.21650 0.93872 1.01826 1.01997 1.21757 0.96746 1.00171 0.94388 0.91070 1.21789 0.77454 1.01150 0.99752 1.48103 1.07611 1.59898 1.17542 1.17024 0.84007 0.78636 0.83102 1.90852 1.73553 1.45299 1.30799 1.20271 0.91843 0.94792 1.02512 1.20355 0.87446 1.00894 1.02333 1.22671 0.98233 1.02874 1.09738 1.83906 0.94637 1.29150 1.53614 1.25216 1.02263 1.00409 1.04802 1.18904 0.88345 1.02765 1.04548 1.18418 0.85011 0.98453 1.04175 1.42795 1.03566 1.25639 1.42920 0.73199 1.22366 0.98065 0.97760 0.85683 1.22676 1.00643 1.00518 0.95240 1.20183 0.90096 0.95751 0.86571 0.93396 1.42407 1.76543 1.11353 1.05677 1.19237 1.36183 0.94034 0.87667 0.91219 1.24739 1.01961 0.96006 0.98078 1.69668 1.49936 1.09382 1.28840 0.86159 0.77369 0.78822 0.84041 1.20614 1.21890 1.21860 0.93020 0.90665 0.93670 0.88975 0.91248 0.82746 0.81073 0.84129 0.91035 0.90070 0.90429 0.91918 0.78146 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.03 37.16 0.34 -1.79 16 2 C -0.11 -1.75 2.46 -90.48 -0.22 -1.98 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.12 1.67 5.71 -3.71 -0.02 1.65 16 5 N -0.60 -8.15 2.97 -174.38 -0.52 -8.67 16 6 C 0.58 8.62 7.61 -12.95 -0.10 8.52 16 7 O -0.53 -9.22 16.40 5.16 0.08 -9.14 16 8 C 0.02 0.27 6.32 -82.10 -0.52 -0.25 16 9 C -0.08 -1.03 10.72 -38.95 -0.42 -1.45 16 10 C -0.21 -2.57 7.26 -38.67 -0.28 -2.85 16 11 S 0.13 1.19 23.31 -107.50 -2.51 -1.32 16 12 C -0.19 -1.49 11.13 28.86 0.32 -1.17 16 13 C -0.11 -0.98 10.16 -40.85 -0.42 -1.40 16 14 C 0.06 0.64 7.67 -84.00 -0.64 -0.01 16 15 N -0.54 -5.86 4.86 -7.34 -0.04 -5.89 16 16 H 0.42 3.64 6.48 -40.82 -0.26 3.38 16 17 C 0.09 1.04 5.54 -3.71 -0.02 1.02 16 18 C -0.15 -2.39 5.66 -26.61 -0.15 -2.55 16 19 C 0.18 3.34 2.19 -67.88 -0.15 3.19 16 20 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 21 N -0.72 -16.79 4.41 -53.37 -0.24 -17.03 16 22 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 26 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.39 7.39 -51.93 -0.38 1.01 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.88 3.89 -51.93 -0.20 0.68 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.38 9.76 7.52 -40.82 -0.31 9.46 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -31.25 360.47 -10.32 -41.57 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.71 Total: 10.80 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.53 Total: -5.89 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.07 Total: -58.10 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.51 Total: -1.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.25 -10.32 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036246068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.609 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds