Wall clock time and date at job start Tue Mar 31 2020 18:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.51922 * 2 1 4 4 C 1.53190 * 109.49354 * 239.92396 * 2 1 3 5 5 N 1.46928 * 108.89303 * 185.48371 * 4 2 1 6 6 C 1.34779 * 120.63069 * 233.51760 * 5 4 2 7 7 O 1.21729 * 119.99791 * 359.80029 * 6 5 4 8 8 C 1.46450 * 119.99970 * 179.81037 * 6 5 4 9 9 C 1.37469 * 125.80503 * 209.50426 * 8 6 5 10 10 C 1.40653 * 107.55331 * 179.84024 * 9 8 6 11 11 S 1.76021 * 142.39531 * 180.02562 * 10 9 8 12 12 C 1.75595 * 91.31356 * 180.37435 * 11 10 9 13 13 C 1.32767 * 110.47025 * 0.02562 * 12 11 10 14 14 C 1.38249 * 108.03619 * 0.41796 * 10 9 8 15 15 N 1.37923 * 125.80698 * 29.80579 * 8 6 5 16 16 H 0.97001 * 125.68058 * 359.96084 * 15 8 6 17 17 C 1.46929 * 118.73762 * 53.53092 * 5 4 2 18 18 C 1.53193 * 108.77615 * 306.39554 * 17 5 4 19 19 C 1.53038 * 109.31104 * 54.63768 * 18 17 5 20 20 H 1.08997 * 109.46734 * 58.63708 * 19 18 17 21 21 N 1.46499 * 109.45775 * 178.61224 * 19 18 17 22 22 C 1.36935 * 120.00240 * 275.00037 * 21 19 18 23 23 H 1.08001 * 119.99638 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00036 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00304 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99784 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47256 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47142 * 119.99721 * 26 24 22 29 29 H 1.48511 * 109.46696 * 239.99687 * 26 24 22 30 30 H 1.08996 * 109.47437 * 180.08290 * 1 2 3 31 31 H 1.09001 * 109.47111 * 300.07824 * 1 2 3 32 32 H 1.08996 * 109.47610 * 60.07616 * 1 2 3 33 33 H 1.09004 * 109.59125 * 65.62514 * 4 2 1 34 34 H 1.09001 * 109.58633 * 305.33701 * 4 2 1 35 35 H 1.07998 * 126.22080 * 359.97438 * 9 8 6 36 36 H 1.08005 * 124.76464 * 179.97438 * 12 11 10 37 37 H 1.08008 * 122.15993 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.58222 * 66.18521 * 17 5 4 39 39 H 1.09000 * 109.58352 * 186.46436 * 17 5 4 40 40 H 1.09000 * 109.49467 * 174.58248 * 18 17 5 41 41 H 1.08998 * 109.49738 * 294.65064 * 18 17 5 42 42 H 0.97010 * 120.00190 * 94.99686 * 21 19 18 43 43 H 0.97001 * 119.99939 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5044 -0.8320 -1.1716 6 6 4.2805 -0.3914 -2.1816 7 8 3.7701 0.0986 -3.1722 8 6 5.7377 -0.5024 -2.0875 9 6 6.6483 0.3416 -2.6775 10 6 7.9339 -0.1150 -2.3350 11 16 9.6441 0.2345 -2.5613 12 6 10.0982 -1.1507 -1.5823 13 6 9.0168 -1.7868 -1.1481 14 6 7.7919 -1.2410 -1.5456 15 7 6.4299 -1.4749 -1.3966 16 1 6.0325 -2.2006 -0.8904 17 6 4.1055 -1.4300 0.0283 18 6 3.5742 -0.6965 1.2638 19 6 2.0441 -0.7216 1.2482 20 1 1.6978 -1.7550 1.2360 21 7 1.5328 -0.0497 2.4455 22 6 1.4016 -0.7453 3.6177 23 1 1.6747 -1.7893 3.6594 24 6 0.9166 -0.1088 4.7519 25 7 0.5834 1.1635 4.7009 26 14 0.7370 -1.0579 6.3508 27 1 1.1759 -2.4616 6.1452 28 1 1.5767 -0.4249 7.3993 29 1 -0.6850 -1.0420 6.7788 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5151 0.8893 32 1 -0.3634 0.5126 -0.8906 33 1 1.7636 -0.1578 -2.1390 34 1 1.6032 -1.7206 -1.2994 35 1 6.4184 1.2005 -3.2906 36 1 11.1145 -1.4444 -1.3648 37 1 9.0789 -2.6689 -0.5278 38 1 3.8357 -2.4846 0.0853 39 1 5.1901 -1.3324 -0.0189 40 1 3.9369 -1.1914 2.1647 41 1 3.9218 0.3365 1.2511 42 1 1.2872 0.8881 2.4079 43 1 0.2448 1.6084 5.4936 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036246068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:18 Heat of formation + Delta-G solvation = 43.317333 kcal Electronic energy + Delta-G solvation = -26216.108458 eV Core-core repulsion = 22581.597454 eV Total energy + Delta-G solvation = -3634.511004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.65354 -40.89440 -39.04667 -36.51275 -36.10359 -34.49228 -33.14045 -32.08824 -31.15227 -29.67262 -27.56656 -26.76106 -24.97954 -23.96803 -23.27042 -22.98343 -21.74779 -21.10279 -20.22060 -19.22745 -18.94684 -17.79989 -17.15674 -16.79144 -16.59137 -16.43496 -15.75864 -15.66466 -15.32628 -15.29210 -15.08019 -14.95933 -14.61118 -14.35374 -14.00752 -13.89172 -13.67290 -13.24425 -13.02862 -12.89957 -12.84397 -12.77332 -12.51341 -12.46942 -12.11858 -12.08762 -11.87836 -11.75040 -11.69358 -11.31945 -11.18947 -10.90528 -10.73860 -9.87467 -9.10538 -8.98015 -8.64981 -7.92017 -5.19960 -0.23151 0.57739 0.85832 1.16361 1.48143 1.48580 1.57940 1.61443 1.77071 1.79339 2.21365 2.57161 3.32443 3.41263 3.72113 3.75163 3.80761 3.88940 3.98167 4.00375 4.19281 4.28382 4.36491 4.43975 4.52482 4.57051 4.69394 4.74283 4.75884 4.77374 4.88888 4.93149 4.99414 5.08904 5.15375 5.24084 5.34900 5.41510 5.44848 5.53412 5.56505 5.59148 6.15474 6.28662 6.29437 6.86380 7.35829 8.11446 8.34381 9.31745 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.002898 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.421159 B = 9658.760143 C =10972.026757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.050 0.950 4 C 0.127 3.873 5 N -0.598 5.598 6 C 0.586 3.414 7 O -0.563 6.563 8 C 0.000 4.000 9 C -0.091 4.091 10 C -0.249 4.249 11 S 0.128 5.872 12 C -0.170 4.170 13 C -0.128 4.128 14 C 0.063 3.937 15 N -0.533 5.533 16 H 0.434 0.566 17 C 0.094 3.906 18 C -0.140 4.140 19 C 0.180 3.820 20 H 0.054 0.946 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.080 0.920 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.262 1.262 28 H -0.298 1.298 29 H -0.298 1.298 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.207 0.793 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.370 0.630 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.854 -8.938 -14.841 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.069 0.931 4 C 0.005 3.995 5 N -0.329 5.329 6 C 0.375 3.625 7 O -0.442 6.442 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.368 4.368 11 S 0.388 5.612 12 C -0.306 4.306 13 C -0.160 4.160 14 C -0.056 4.056 15 N -0.142 5.142 16 H 0.280 0.720 17 C -0.029 4.029 18 C -0.181 4.181 19 C 0.072 3.928 20 H 0.072 0.928 21 N -0.370 5.370 22 C -0.361 4.361 23 H 0.098 0.902 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.187 1.187 28 H -0.226 1.226 29 H -0.226 1.226 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.169 0.831 36 H 0.224 0.776 37 H 0.187 0.813 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.202 0.798 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.257 -7.912 -15.899 25.470 hybrid contribution -1.554 -0.802 2.226 2.831 sum 16.704 -8.714 -13.673 23.279 Atomic orbital electron populations 1.21566 0.93627 1.02238 1.01288 1.21626 0.96904 0.99081 0.94523 0.93111 1.21716 0.77779 1.01987 0.98055 1.48129 1.07480 1.59627 1.17671 1.17209 0.84677 0.77847 0.82732 1.90826 1.74331 1.46864 1.32167 1.19970 0.90980 0.96189 1.04283 1.20496 0.88435 1.00984 1.02278 1.22933 0.99090 1.03873 1.10940 1.83929 0.92978 1.30237 1.54091 1.25719 1.03753 0.98574 1.02529 1.19213 0.87260 1.04050 1.05520 1.18888 0.85549 0.97974 1.03204 1.42657 1.03519 1.25405 1.42621 0.71993 1.22392 0.98878 0.98543 0.83061 1.22452 0.98787 0.99797 0.97090 1.20426 0.91295 0.95629 0.85495 0.92771 1.42605 1.76925 1.10782 1.06714 1.19636 1.33665 0.94397 0.88355 0.90199 1.25500 1.03228 0.96882 1.01338 1.69830 1.52179 1.11075 1.29166 0.85157 0.76535 0.78428 0.80157 1.18655 1.22606 1.22602 0.91969 0.94108 0.91622 0.89325 0.88898 0.83126 0.77585 0.81324 0.87917 0.88407 0.91018 0.94137 0.79847 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.03 71.98 0.65 -3.36 16 2 C -0.10 -3.19 2.46 -10.71 -0.03 -3.21 16 3 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.13 3.33 5.71 86.36 0.49 3.82 16 5 N -0.60 -15.43 2.97 -823.82 -2.45 -17.88 16 6 C 0.59 16.99 7.61 86.38 0.66 17.65 16 7 O -0.56 -19.78 16.40 -4.44 -0.07 -19.86 16 8 C 0.00 0.00 6.32 40.14 0.25 0.25 16 9 C -0.09 -2.37 10.72 22.68 0.24 -2.13 16 10 C -0.25 -5.68 7.26 22.86 0.17 -5.52 16 11 S 0.13 2.16 23.31 -56.49 -1.32 0.84 16 12 C -0.17 -2.02 11.13 66.64 0.74 -1.28 16 13 C -0.13 -1.78 10.16 21.49 0.22 -1.56 16 14 C 0.06 1.26 7.67 38.40 0.29 1.56 16 15 N -0.53 -10.49 4.86 -177.14 -0.86 -11.35 16 16 H 0.43 6.23 6.48 -92.71 -0.60 5.63 16 17 C 0.09 2.09 5.54 86.36 0.48 2.56 16 18 C -0.14 -4.36 5.66 30.67 0.17 -4.18 16 19 C 0.18 6.39 2.19 45.03 0.10 6.49 16 20 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 21 N -0.73 -34.59 4.41 -322.78 -1.42 -36.01 16 22 C -0.23 -11.91 9.93 84.03 0.83 -11.08 16 23 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 25 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 26 Si 0.97 44.80 29.55 68.60 2.03 46.82 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.55 7.39 -2.39 -0.02 1.53 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.09 2.46 7.00 -2.38 -0.02 2.44 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 36 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.10 1.89 3.89 -2.39 -0.01 1.88 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.37 19.51 7.52 -92.70 -0.70 18.82 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -69.60 360.47 1.69 -67.91 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.24 Total: 31.58 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.74 Total: -3.82 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -4.45 Total: -123.48 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.84 kcal Total: -69.60 1.69 -67.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036246068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.231 kcal (2) G-P(sol) polarization free energy of solvation -69.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds