Wall clock time and date at job start Tue Mar 31 2020 18:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.49903 * 2 1 4 4 C 1.53191 * 109.49603 * 120.06881 * 2 1 3 5 5 N 1.46922 * 108.77477 * 174.62285 * 4 2 1 6 6 C 1.34774 * 120.63639 * 126.36477 * 5 4 2 7 7 O 1.21736 * 119.99467 * 0.13952 * 6 5 4 8 8 C 1.46454 * 120.00329 * 180.13093 * 6 5 4 9 9 C 1.37461 * 125.80323 * 150.85552 * 8 6 5 10 10 C 1.40659 * 107.55490 * 180.02562 * 9 8 6 11 11 S 1.76020 * 142.39627 * 180.02562 * 10 9 8 12 12 C 1.75595 * 91.31221 * 179.97438 * 11 10 9 13 13 C 1.32776 * 110.47161 * 0.02562 * 12 11 10 14 14 C 1.38248 * 108.03456 * 0.02562 * 10 9 8 15 15 N 1.37914 * 125.81007 * 330.66549 * 8 6 5 16 16 H 0.97006 * 125.68011 * 359.91648 * 15 8 6 17 17 C 1.46935 * 118.73533 * 306.63241 * 5 4 2 18 18 C 1.52759 * 109.00430 * 53.31532 * 17 5 4 19 19 C 1.53042 * 109.38580 * 305.58527 * 18 17 5 20 20 H 1.08992 * 109.46110 * 301.22471 * 19 18 17 21 21 N 1.46502 * 109.46219 * 181.25970 * 19 18 17 22 22 C 1.36934 * 119.99364 * 84.93064 * 21 19 18 23 23 H 1.07995 * 120.00706 * 0.02562 * 22 21 19 24 24 C 1.38820 * 119.99443 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99994 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00183 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46913 * 89.99904 * 26 24 22 28 28 H 1.48492 * 109.47389 * 209.99737 * 26 24 22 29 29 H 1.48495 * 109.46973 * 330.00316 * 26 24 22 30 30 H 1.09000 * 109.46981 * 299.93619 * 1 2 3 31 31 H 1.09008 * 109.46727 * 59.93837 * 1 2 3 32 32 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.59138 * 54.82659 * 4 2 1 34 34 H 1.09003 * 109.58368 * 294.40356 * 4 2 1 35 35 H 1.08004 * 126.22500 * 0.06344 * 9 8 6 36 36 H 1.08004 * 124.76393 * 179.97438 * 12 11 10 37 37 H 1.08004 * 122.15616 * 180.02562 * 13 12 11 38 38 H 1.08997 * 109.58253 * 173.14597 * 17 5 4 39 39 H 1.08995 * 109.58629 * 293.57182 * 17 5 4 40 40 H 1.08998 * 109.56508 * 185.54996 * 18 17 5 41 41 H 1.08997 * 109.38853 * 65.51618 * 18 17 5 42 42 H 0.96997 * 119.99846 * 264.93354 * 21 19 18 43 43 H 0.96995 * 120.00106 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5046 -0.8281 1.1702 6 6 4.2807 -0.3841 2.1786 7 8 3.7702 0.1069 3.1687 8 6 5.7381 -0.4926 2.0835 9 6 6.6477 0.3501 2.6768 10 6 7.9339 -0.1050 2.3345 11 16 9.6437 0.2441 2.5645 12 6 10.0993 -1.1312 1.5725 13 6 9.0186 -1.7638 1.1311 14 6 7.7932 -1.2230 1.5336 15 7 6.4315 -1.4598 1.3865 16 1 6.0349 -2.1839 0.8772 17 6 4.1062 -1.4205 -0.0324 18 6 3.5715 -0.6943 -1.2654 19 6 2.0415 -0.7230 -1.2482 20 1 1.6978 -1.7573 -1.2351 21 7 1.5272 -0.0532 -2.4453 22 6 1.3978 -0.7497 -3.6172 23 1 1.6744 -1.7928 -3.6589 24 6 0.9100 -0.1152 -4.7514 25 7 0.7851 -0.7847 -5.8777 26 14 0.4308 1.6889 -4.6792 27 1 1.6082 2.5277 -5.0192 28 1 -0.6606 1.9505 -5.6516 29 1 -0.0358 2.0226 -3.3096 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6057 -1.7214 1.2982 34 1 1.7632 -0.1577 2.1389 35 1 6.4168 1.2057 3.2942 36 1 11.1160 -1.4214 1.3517 37 1 9.0818 -2.6397 0.5024 38 1 5.1901 -1.3144 0.0111 39 1 3.8424 -2.4765 -0.0906 40 1 3.9345 -1.1889 -2.1663 41 1 3.9161 0.3397 -1.2541 42 1 1.2784 0.8836 -2.4078 43 1 0.4447 -0.3412 -6.6703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036246070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:29 Heat of formation + Delta-G solvation = 66.169865 kcal Electronic energy + Delta-G solvation = -26284.827187 eV Core-core repulsion = 22651.307143 eV Total energy + Delta-G solvation = -3633.520044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77545 -39.85598 -37.84879 -35.65188 -34.85878 -33.02731 -31.72186 -31.20931 -30.02939 -28.77665 -26.52043 -25.40366 -23.60915 -22.81584 -22.20006 -21.56203 -20.88044 -19.98845 -19.34531 -18.21070 -17.57387 -16.79333 -16.13901 -15.73661 -15.56941 -15.09123 -14.58378 -14.52896 -14.42400 -14.12973 -13.92230 -13.65143 -13.41357 -13.08487 -13.07599 -12.57040 -12.54222 -12.18932 -12.06319 -11.90619 -11.68587 -11.48897 -11.13408 -11.07697 -10.98573 -10.79242 -10.61731 -10.30434 -10.17387 -9.94565 -9.87607 -9.65618 -9.01056 -8.77920 -8.29490 -7.90370 -7.35629 -5.84996 -3.20922 0.54754 1.29793 1.74916 1.84215 2.51130 2.53372 2.76631 3.18640 3.31859 3.35302 3.40809 4.28961 4.49967 4.52148 4.71954 4.74298 4.94516 5.02582 5.07793 5.10747 5.18650 5.32495 5.33702 5.48654 5.51574 5.55884 5.69943 5.72353 5.74576 5.85952 5.91317 5.99327 6.14159 6.18533 6.22132 6.26802 6.37764 6.43578 6.58920 6.66164 6.83032 7.01073 7.22413 7.89570 7.93511 8.33992 9.11839 9.84730 10.04383 11.33142 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.002958 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.260312 B = 9463.048043 C =10448.478140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.601 5.601 6 C 0.586 3.414 7 O -0.528 6.528 8 C 0.019 3.981 9 C -0.079 4.079 10 C -0.216 4.216 11 S 0.127 5.873 12 C -0.190 4.190 13 C -0.112 4.112 14 C 0.059 3.941 15 N -0.541 5.541 16 H 0.425 0.575 17 C 0.085 3.915 18 C -0.151 4.151 19 C 0.189 3.811 20 H 0.057 0.943 21 N -0.744 5.744 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.142 0.858 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 -2.004 17.321 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.333 5.333 6 C 0.373 3.627 7 O -0.405 6.405 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.336 4.336 11 S 0.387 5.613 12 C -0.326 4.326 13 C -0.146 4.146 14 C -0.059 4.059 15 N -0.149 5.149 16 H 0.269 0.731 17 C -0.038 4.038 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.075 0.925 21 N -0.386 5.386 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.580 5.580 26 Si 0.713 3.287 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.799 -0.983 18.323 24.214 hybrid contribution -1.210 -0.190 -1.413 1.870 sum 14.589 -1.174 16.910 22.364 Atomic orbital electron populations 1.21672 0.93906 1.02207 1.01734 1.21804 0.96764 1.00154 0.94740 0.91142 1.21765 0.77561 1.01264 0.99469 1.48111 1.07529 1.60069 1.17570 1.17026 0.84031 0.78561 0.83073 1.90855 1.73572 1.45267 1.30798 1.20246 0.91786 0.94973 1.02552 1.20350 0.87467 1.00876 1.02293 1.22675 0.98241 1.03097 1.09572 1.83911 0.94602 1.29826 1.52997 1.25226 1.02296 1.00498 1.04587 1.18915 0.88325 1.02846 1.04489 1.18421 0.85022 0.98558 1.03934 1.42801 1.03580 1.25889 1.42646 0.73140 1.22278 0.98181 0.97999 0.85388 1.22565 1.00178 1.00647 0.95793 1.20157 0.90252 0.96110 0.85539 0.92460 1.42757 1.77994 1.10274 1.07551 1.19028 1.36687 0.95792 0.85949 0.89240 1.24662 1.01188 0.97476 0.95604 1.69693 1.51925 1.35742 1.00640 0.86585 0.78272 0.86734 0.77109 1.21131 1.21732 1.20265 0.93434 0.91301 0.92519 0.90994 0.88872 0.82774 0.81041 0.84062 0.89911 0.90785 0.89865 0.92032 0.80548 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.03 37.16 0.34 -1.66 16 2 C -0.11 -1.70 2.46 -90.50 -0.22 -1.92 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.12 1.59 5.72 -3.71 -0.02 1.57 16 5 N -0.60 -7.78 2.98 -174.65 -0.52 -8.30 16 6 C 0.59 8.29 7.61 -12.95 -0.10 8.19 16 7 O -0.53 -8.91 16.40 5.16 0.08 -8.83 16 8 C 0.02 0.24 6.33 -82.10 -0.52 -0.28 16 9 C -0.08 -1.00 10.72 -38.95 -0.42 -1.41 16 10 C -0.22 -2.51 7.26 -38.66 -0.28 -2.79 16 11 S 0.13 1.15 23.31 -107.50 -2.51 -1.35 16 12 C -0.19 -1.45 11.13 28.86 0.32 -1.13 16 13 C -0.11 -0.96 10.16 -40.85 -0.42 -1.38 16 14 C 0.06 0.63 7.67 -84.01 -0.64 -0.01 16 15 N -0.54 -5.68 4.86 -7.34 -0.04 -5.72 16 16 H 0.42 3.53 6.47 -40.82 -0.26 3.26 16 17 C 0.09 1.00 5.50 -3.93 -0.02 0.97 16 18 C -0.15 -2.30 5.64 -26.83 -0.15 -2.45 16 19 C 0.19 3.26 2.20 -67.88 -0.15 3.12 16 20 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 21 N -0.74 -16.29 4.22 -53.38 -0.23 -16.52 16 22 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 23 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -28.40 13.97 55.49 0.78 -27.63 16 26 Si 0.88 21.53 27.74 -169.99 -4.71 16.82 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.16 7.37 -51.92 -0.38 0.78 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 35 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.08 0.86 3.90 -51.93 -0.20 0.66 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.36 8.00 5.36 -40.82 -0.22 7.78 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -32.22 357.24 -9.97 -42.18 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.67 Total: 9.68 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.54 Total: -5.73 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.01 Total: -58.16 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.22 -9.97 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036246070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.353 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds