Wall clock time and date at job start Tue Mar 31 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.49903 * 2 1 4 4 C 1.53191 * 109.49603 * 120.06881 * 2 1 3 5 5 N 1.46922 * 108.77477 * 174.62285 * 4 2 1 6 6 C 1.34774 * 120.63639 * 126.36477 * 5 4 2 7 7 O 1.21736 * 119.99467 * 0.13952 * 6 5 4 8 8 C 1.46454 * 120.00329 * 180.13093 * 6 5 4 9 9 C 1.37461 * 125.80323 * 150.85552 * 8 6 5 10 10 C 1.40659 * 107.55490 * 180.02562 * 9 8 6 11 11 S 1.76020 * 142.39627 * 180.02562 * 10 9 8 12 12 C 1.75595 * 91.31221 * 179.97438 * 11 10 9 13 13 C 1.32776 * 110.47161 * 0.02562 * 12 11 10 14 14 C 1.38248 * 108.03456 * 0.02562 * 10 9 8 15 15 N 1.37914 * 125.81007 * 330.66549 * 8 6 5 16 16 H 0.97006 * 125.68011 * 359.91648 * 15 8 6 17 17 C 1.46935 * 118.73533 * 306.63241 * 5 4 2 18 18 C 1.52759 * 109.00430 * 53.31532 * 17 5 4 19 19 C 1.53042 * 109.38580 * 305.58527 * 18 17 5 20 20 H 1.08992 * 109.46110 * 301.22471 * 19 18 17 21 21 N 1.46502 * 109.46219 * 181.25970 * 19 18 17 22 22 C 1.36934 * 119.99364 * 84.93064 * 21 19 18 23 23 H 1.07995 * 120.00706 * 0.02562 * 22 21 19 24 24 C 1.38820 * 119.99443 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99994 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00183 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.46913 * 89.99904 * 26 24 22 28 28 H 1.48492 * 109.47389 * 209.99737 * 26 24 22 29 29 H 1.48495 * 109.46973 * 330.00316 * 26 24 22 30 30 H 1.09000 * 109.46981 * 299.93619 * 1 2 3 31 31 H 1.09008 * 109.46727 * 59.93837 * 1 2 3 32 32 H 1.08998 * 109.47241 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.59138 * 54.82659 * 4 2 1 34 34 H 1.09003 * 109.58368 * 294.40356 * 4 2 1 35 35 H 1.08004 * 126.22500 * 0.06344 * 9 8 6 36 36 H 1.08004 * 124.76393 * 179.97438 * 12 11 10 37 37 H 1.08004 * 122.15616 * 180.02562 * 13 12 11 38 38 H 1.08997 * 109.58253 * 173.14597 * 17 5 4 39 39 H 1.08995 * 109.58629 * 293.57182 * 17 5 4 40 40 H 1.08998 * 109.56508 * 185.54996 * 18 17 5 41 41 H 1.08997 * 109.38853 * 65.51618 * 18 17 5 42 42 H 0.96997 * 119.99846 * 264.93354 * 21 19 18 43 43 H 0.96995 * 120.00106 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5046 -0.8281 1.1702 6 6 4.2807 -0.3841 2.1786 7 8 3.7702 0.1069 3.1687 8 6 5.7381 -0.4926 2.0835 9 6 6.6477 0.3501 2.6768 10 6 7.9339 -0.1050 2.3345 11 16 9.6437 0.2441 2.5645 12 6 10.0993 -1.1312 1.5725 13 6 9.0186 -1.7638 1.1311 14 6 7.7932 -1.2230 1.5336 15 7 6.4315 -1.4598 1.3865 16 1 6.0349 -2.1839 0.8772 17 6 4.1062 -1.4205 -0.0324 18 6 3.5715 -0.6943 -1.2654 19 6 2.0415 -0.7230 -1.2482 20 1 1.6978 -1.7573 -1.2351 21 7 1.5272 -0.0532 -2.4453 22 6 1.3978 -0.7497 -3.6172 23 1 1.6744 -1.7928 -3.6589 24 6 0.9100 -0.1152 -4.7514 25 7 0.7851 -0.7847 -5.8777 26 14 0.4308 1.6889 -4.6792 27 1 1.6082 2.5277 -5.0192 28 1 -0.6606 1.9505 -5.6516 29 1 -0.0358 2.0226 -3.3096 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6057 -1.7214 1.2982 34 1 1.7632 -0.1577 2.1389 35 1 6.4168 1.2057 3.2942 36 1 11.1160 -1.4214 1.3517 37 1 9.0818 -2.6397 0.5024 38 1 5.1901 -1.3144 0.0111 39 1 3.8424 -2.4765 -0.0906 40 1 3.9345 -1.1889 -2.1663 41 1 3.9161 0.3397 -1.2541 42 1 1.2784 0.8836 -2.4078 43 1 0.4447 -0.3412 -6.6703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036246070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:28 Heat of formation + Delta-G solvation = 46.322183 kcal Electronic energy + Delta-G solvation = -26285.687847 eV Core-core repulsion = 22651.307143 eV Total energy + Delta-G solvation = -3634.380704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.66182 -40.92667 -39.11894 -36.57067 -36.16418 -34.52411 -33.30472 -32.09189 -31.63968 -29.69524 -27.62626 -26.81087 -24.78418 -23.91132 -23.27064 -22.91260 -21.74863 -21.31817 -20.25668 -19.58653 -19.02471 -17.79323 -17.17475 -16.81123 -16.59944 -16.42051 -16.07860 -15.53899 -15.42258 -15.23638 -15.03066 -14.91457 -14.65833 -14.47928 -14.16759 -13.90443 -13.74160 -13.50292 -13.13331 -12.97798 -12.90284 -12.79717 -12.51346 -12.46815 -12.11590 -12.08075 -11.91574 -11.78916 -11.74586 -11.33605 -11.23131 -10.94397 -10.74581 -9.89447 -9.30536 -9.09799 -8.65230 -8.01570 -5.33499 -0.23636 0.57537 0.85437 1.15775 1.37335 1.38343 1.45742 1.60915 1.77163 1.78890 2.20568 2.47907 3.29860 3.31345 3.49856 3.69369 3.79841 3.85017 3.94758 3.99314 4.13498 4.25833 4.33820 4.41615 4.49207 4.53639 4.65827 4.70621 4.75280 4.77003 4.84245 4.92117 4.98154 5.08756 5.11691 5.19421 5.32233 5.38122 5.41412 5.52196 5.57864 5.78525 6.14084 6.22659 6.27952 6.85840 7.08560 7.85383 8.03246 9.19819 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.002958 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.260312 B = 9463.048043 C =10448.478140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.061 0.939 4 C 0.126 3.874 5 N -0.598 5.598 6 C 0.588 3.412 7 O -0.561 6.561 8 C 0.000 4.000 9 C -0.090 4.090 10 C -0.248 4.248 11 S 0.129 5.871 12 C -0.170 4.170 13 C -0.129 4.129 14 C 0.063 3.937 15 N -0.534 5.534 16 H 0.434 0.566 17 C 0.094 3.906 18 C -0.142 4.142 19 C 0.183 3.817 20 H 0.055 0.945 21 N -0.747 5.747 22 C -0.218 4.218 23 H 0.064 0.936 24 C -0.061 4.061 25 N -0.983 5.983 26 Si 0.945 3.055 27 H -0.284 1.284 28 H -0.299 1.299 29 H -0.253 1.253 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.207 0.793 37 H 0.168 0.832 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.362 0.638 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.103 -2.316 18.771 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.080 0.920 4 C 0.004 3.996 5 N -0.329 5.329 6 C 0.377 3.623 7 O -0.440 6.440 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.368 4.368 11 S 0.389 5.611 12 C -0.306 4.306 13 C -0.161 4.161 14 C -0.057 4.057 15 N -0.143 5.143 16 H 0.280 0.720 17 C -0.029 4.029 18 C -0.183 4.183 19 C 0.075 3.925 20 H 0.073 0.927 21 N -0.389 5.389 22 C -0.349 4.349 23 H 0.082 0.918 24 C -0.253 4.253 25 N -0.634 5.634 26 Si 0.773 3.227 27 H -0.211 1.211 28 H -0.226 1.226 29 H -0.178 1.178 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.170 0.830 36 H 0.223 0.777 37 H 0.185 0.815 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.195 0.805 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.500 -1.307 19.824 26.476 hybrid contribution -1.584 -0.165 -1.795 2.400 sum 15.916 -1.472 18.029 24.094 Atomic orbital electron populations 1.21637 0.93473 1.02516 1.01619 1.21681 0.97079 0.99502 0.94208 0.92017 1.21730 0.77704 1.02029 0.98151 1.48125 1.07489 1.59738 1.17574 1.17178 0.84613 0.77815 0.82707 1.90831 1.74302 1.46814 1.32081 1.19985 0.91041 0.96247 1.04180 1.20497 0.88339 1.00992 1.02230 1.22940 0.99115 1.04028 1.10688 1.83923 0.92993 1.30787 1.53422 1.25716 1.03729 0.98753 1.02420 1.19215 0.87358 1.04086 1.05475 1.18876 0.85553 0.98155 1.03103 1.42683 1.03538 1.25696 1.42382 0.72037 1.22281 0.98955 0.98599 0.83071 1.22360 0.98437 1.00401 0.97130 1.20409 0.91419 0.95831 0.84855 0.92738 1.42787 1.78319 1.10226 1.07596 1.19003 1.33821 0.94795 0.87272 0.91828 1.25369 1.02704 1.01733 0.95474 1.69856 1.54478 1.37611 1.01482 0.85561 0.77523 0.81682 0.77912 1.21104 1.22641 1.17798 0.91171 0.93754 0.92023 0.89097 0.88955 0.82992 0.77658 0.81472 0.88311 0.88280 0.91239 0.93158 0.80498 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.03 71.98 0.65 -3.03 16 2 C -0.10 -2.95 2.46 -10.71 -0.03 -2.97 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.13 3.04 5.72 86.36 0.49 3.53 16 5 N -0.60 -14.46 2.98 -824.68 -2.46 -16.92 16 6 C 0.59 16.10 7.61 86.38 0.66 16.75 16 7 O -0.56 -18.73 16.40 -4.46 -0.07 -18.80 16 8 C 0.00 -0.01 6.33 40.14 0.25 0.25 16 9 C -0.09 -2.23 10.72 22.68 0.24 -1.98 16 10 C -0.25 -5.48 7.26 22.86 0.17 -5.32 16 11 S 0.13 2.11 23.31 -56.49 -1.32 0.79 16 12 C -0.17 -2.00 11.13 66.64 0.74 -1.26 16 13 C -0.13 -1.79 10.16 21.49 0.22 -1.57 16 14 C 0.06 1.22 7.67 38.40 0.29 1.52 16 15 N -0.53 -10.23 4.86 -177.15 -0.86 -11.09 16 16 H 0.43 6.16 6.47 -92.70 -0.60 5.56 16 17 C 0.09 2.00 5.50 86.22 0.47 2.48 16 18 C -0.14 -4.20 5.64 30.53 0.17 -4.03 16 19 C 0.18 6.12 2.20 45.02 0.10 6.22 16 20 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 21 N -0.75 -32.33 4.22 -322.80 -1.36 -33.70 16 22 C -0.22 -11.64 10.41 84.04 0.87 -10.77 16 23 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 24 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 25 N -0.98 -61.47 13.97 21.65 0.30 -61.16 16 26 Si 0.94 44.82 27.74 68.60 1.90 46.72 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.43 7.37 -2.38 -0.02 1.41 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.33 7.00 -2.39 -0.02 2.31 16 35 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 36 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.10 1.84 3.90 -2.39 -0.01 1.83 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.36 15.62 5.36 -92.71 -0.50 15.13 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -71.27 357.24 1.82 -69.45 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.10 Total: 27.92 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.78 Total: -3.21 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.38 Total: -122.87 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.07 Total: -18.80 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.72 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.32 Total: 0.79 kcal Total: -71.27 1.82 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036246070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.774 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds