Wall clock time and date at job start Tue Mar 31 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.52594 * 2 1 4 4 C 1.53191 * 109.49904 * 120.08280 * 2 1 3 5 5 N 1.46927 * 108.77655 * 174.58768 * 4 2 1 6 6 C 1.34776 * 120.63044 * 126.37048 * 5 4 2 7 7 O 1.21727 * 119.99926 * 353.21820 * 6 5 4 8 8 C 1.46455 * 119.99629 * 173.21188 * 6 5 4 9 9 C 1.37468 * 125.80100 * 156.44478 * 8 6 5 10 10 C 1.40651 * 107.55694 * 179.97438 * 9 8 6 11 11 S 1.76024 * 142.39793 * 179.97438 * 10 9 8 12 12 C 1.75596 * 91.31153 * 180.02562 * 11 10 9 13 13 C 1.32776 * 110.47210 * 359.97438 * 12 11 10 14 14 C 1.38250 * 108.03324 * 0.02562 * 10 9 8 15 15 N 1.37912 * 125.81260 * 336.13847 * 8 6 5 16 16 H 0.97001 * 125.68069 * 0.02592 * 15 8 6 17 17 C 1.46929 * 118.73645 * 306.63989 * 5 4 2 18 18 C 1.52763 * 109.00568 * 53.31352 * 17 5 4 19 19 C 1.53035 * 109.38533 * 305.58429 * 18 17 5 20 20 H 1.09001 * 109.46075 * 181.25823 * 19 18 17 21 21 N 1.46499 * 109.45983 * 301.21985 * 19 18 17 22 22 C 1.36932 * 120.00340 * 275.06438 * 21 19 18 23 23 H 1.08002 * 119.99692 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00177 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00451 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99814 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47310 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47362 * 120.00451 * 26 24 22 29 29 H 1.48501 * 109.47125 * 240.00061 * 26 24 22 30 30 H 1.08999 * 109.47107 * 299.91758 * 1 2 3 31 31 H 1.09006 * 109.46956 * 59.91611 * 1 2 3 32 32 H 1.08999 * 109.47214 * 179.91180 * 1 2 3 33 33 H 1.09002 * 109.58386 * 54.80347 * 4 2 1 34 34 H 1.09001 * 109.70407 * 294.44429 * 4 2 1 35 35 H 1.08005 * 126.22092 * 359.94747 * 9 8 6 36 36 H 1.07998 * 124.76467 * 179.97438 * 12 11 10 37 37 H 1.07995 * 122.15823 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.58105 * 173.14329 * 17 5 4 39 39 H 1.08996 * 109.58939 * 293.57321 * 17 5 4 40 40 H 1.08994 * 109.56340 * 185.54616 * 18 17 5 41 41 H 1.09005 * 109.38869 * 65.51237 * 18 17 5 42 42 H 0.97000 * 119.99932 * 95.06977 * 21 19 18 43 43 H 0.97000 * 120.00748 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3856 2.1779 7 8 3.7824 0.2181 3.1099 8 6 5.7248 -0.6303 2.1523 9 6 6.6772 0.1069 2.8151 10 6 7.9310 -0.4608 2.5250 11 16 9.6517 -0.2821 2.8501 12 6 10.0273 -1.6702 1.8424 13 6 8.9165 -2.1864 1.3301 14 6 7.7280 -1.5404 1.6856 15 7 6.3597 -1.6429 1.4641 16 1 5.9240 -2.3132 0.9147 17 6 4.1055 -1.4216 -0.0333 18 6 3.5708 -0.6950 -1.2660 19 6 2.0408 -0.7230 -1.2484 20 1 1.6582 -0.2243 -2.1389 21 7 1.5783 -2.1130 -1.2310 22 6 1.4481 -2.8061 -2.4048 23 1 1.6867 -2.3281 -3.3434 24 6 1.0104 -4.1232 -2.3881 25 7 0.7200 -4.7059 -1.2443 26 14 0.8334 -5.0689 -3.9894 27 1 1.2191 -4.1944 -5.1260 28 1 1.7171 -6.2620 -3.9600 29 1 -0.5773 -5.5019 -4.1552 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6053 -1.7217 1.2979 34 1 1.7637 -0.1602 2.1402 35 1 6.4958 0.9661 3.4439 36 1 11.0223 -2.0506 1.6642 37 1 8.9300 -3.0483 0.6796 38 1 5.1895 -1.3159 0.0100 39 1 3.8412 -2.4774 -0.0916 40 1 3.9334 -1.1895 -2.1671 41 1 3.9159 0.3390 -1.2547 42 1 1.3643 -2.5423 -0.3879 43 1 0.4138 -5.6262 -1.2327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036246071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:33 Heat of formation + Delta-G solvation = 62.211760 kcal Electronic energy + Delta-G solvation = -26662.339116 eV Core-core repulsion = 23028.647436 eV Total energy + Delta-G solvation = -3633.691680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.61404 -39.71483 -37.74285 -35.50847 -34.40035 -32.94666 -31.56755 -31.03954 -29.33366 -28.65309 -26.28341 -25.25478 -23.70624 -23.23396 -22.09515 -21.82142 -20.67767 -19.46641 -18.75428 -17.77095 -17.44465 -16.57042 -15.91140 -15.59812 -15.43602 -14.88168 -14.54146 -14.31334 -14.28479 -14.06909 -13.81593 -13.52416 -13.39409 -13.04816 -12.92263 -12.61618 -12.30565 -11.99272 -11.88923 -11.55083 -11.41518 -11.29170 -11.00146 -10.98807 -10.89519 -10.58275 -10.56704 -10.23528 -9.95763 -9.93185 -9.81952 -9.64224 -9.03174 -8.46861 -8.15323 -7.78643 -7.07750 -5.88310 -3.17246 0.66571 1.40261 1.87800 1.93833 2.62705 2.71225 3.04719 3.34456 3.38049 3.41338 3.43121 4.49264 4.50568 4.62720 4.84570 4.96223 5.19505 5.22097 5.27380 5.31842 5.39891 5.45721 5.59772 5.62649 5.69942 5.76838 5.85223 5.86407 5.88922 5.98150 6.11394 6.21797 6.27512 6.34628 6.41760 6.44621 6.56703 6.60576 6.66004 6.81186 6.90664 7.17643 7.49762 7.60797 8.15646 8.29973 9.41955 9.97672 10.32904 11.33928 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.003316 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.589450 B = 8442.649874 C = 9866.303190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.597 5.597 6 C 0.583 3.417 7 O -0.533 6.533 8 C 0.022 3.978 9 C -0.082 4.082 10 C -0.215 4.215 11 S 0.121 5.879 12 C -0.192 4.192 13 C -0.110 4.110 14 C 0.057 3.943 15 N -0.538 5.538 16 H 0.427 0.573 17 C 0.094 3.906 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.171 0.829 37 H 0.142 0.858 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.015 8.127 5.736 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.086 0.914 4 C -0.002 4.002 5 N -0.328 5.328 6 C 0.371 3.629 7 O -0.410 6.410 8 C -0.093 4.093 9 C -0.113 4.113 10 C -0.335 4.335 11 S 0.381 5.619 12 C -0.328 4.328 13 C -0.143 4.143 14 C -0.062 4.062 15 N -0.146 5.146 16 H 0.271 0.729 17 C -0.029 4.029 18 C -0.189 4.189 19 C 0.068 3.932 20 H 0.071 0.929 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.189 0.811 37 H 0.159 0.841 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.458 9.220 6.784 19.235 hybrid contribution -1.133 -2.233 -1.928 3.161 sum 14.324 6.987 4.856 16.661 Atomic orbital electron populations 1.21665 0.94038 1.03231 1.00583 1.21708 0.96656 0.98971 0.95512 0.91415 1.21731 0.77609 1.01830 0.99039 1.48053 1.07532 1.59730 1.17492 1.17016 0.83791 0.79444 0.82686 1.90833 1.73456 1.41518 1.35220 1.20334 0.92642 0.94356 1.01963 1.20338 0.87416 1.01362 1.02186 1.22654 0.98218 1.03728 1.08948 1.83836 0.95866 1.30755 1.51492 1.25189 1.01980 1.01381 1.04247 1.18936 0.88691 1.02454 1.04262 1.18429 0.84967 0.99375 1.03390 1.42881 1.04101 1.26568 1.41029 0.72881 1.22081 0.96691 0.99482 0.84601 1.22426 1.00740 0.98818 0.96906 1.20219 0.90527 0.87411 0.95047 0.92897 1.42492 1.78982 1.07693 1.06974 1.19263 1.37312 0.93843 0.86590 0.91169 1.24705 1.02160 0.97194 0.96636 1.69649 1.51631 1.13057 1.23646 0.86173 0.77368 0.79934 0.83008 1.20611 1.21977 1.21903 0.93629 0.92726 0.91022 0.90340 0.89388 0.82809 0.81136 0.84083 0.90816 0.89381 0.90547 0.93048 0.78124 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.06 37.15 0.34 -1.79 16 2 C -0.11 -1.71 2.67 -90.50 -0.24 -1.95 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.95 5.43 -3.71 -0.02 1.92 16 5 N -0.60 -9.37 2.98 -174.65 -0.52 -9.89 16 6 C 0.58 9.53 7.61 -12.95 -0.10 9.43 16 7 O -0.53 -10.02 16.37 5.16 0.08 -9.93 16 8 C 0.02 0.32 6.34 -82.10 -0.52 -0.20 16 9 C -0.08 -1.14 10.68 -38.95 -0.42 -1.55 16 10 C -0.22 -2.75 7.26 -38.67 -0.28 -3.03 16 11 S 0.12 1.20 23.31 -107.50 -2.51 -1.30 16 12 C -0.19 -1.66 11.13 28.86 0.32 -1.34 16 13 C -0.11 -1.10 10.16 -40.85 -0.42 -1.51 16 14 C 0.06 0.70 7.67 -84.00 -0.64 0.06 16 15 N -0.54 -6.86 4.88 -7.34 -0.04 -6.90 16 16 H 0.43 4.95 6.38 -40.82 -0.26 4.69 16 17 C 0.09 1.41 4.99 -3.93 -0.02 1.39 16 18 C -0.15 -2.33 5.76 -26.83 -0.15 -2.49 16 19 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.72 -15.78 3.64 -53.39 -0.19 -15.97 16 22 C -0.24 -6.01 9.93 -15.06 -0.15 -6.16 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -26.23 13.06 55.49 0.72 -25.50 16 26 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 33 H 0.08 1.39 6.64 -51.93 -0.34 1.05 16 34 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 35 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.07 0.96 4.23 -51.93 -0.22 0.74 16 39 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.38 9.04 5.92 -40.82 -0.24 8.79 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -29.43 356.38 -10.24 -39.67 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.57 Total: 12.88 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.57 Total: -4.60 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.03 Total: -58.26 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.43 -10.24 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036246071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.881 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds