Wall clock time and date at job start Tue Mar 31 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.52594 * 2 1 4 4 C 1.53191 * 109.49904 * 120.08280 * 2 1 3 5 5 N 1.46927 * 108.77655 * 174.58768 * 4 2 1 6 6 C 1.34776 * 120.63044 * 126.37048 * 5 4 2 7 7 O 1.21727 * 119.99926 * 353.21820 * 6 5 4 8 8 C 1.46455 * 119.99629 * 173.21188 * 6 5 4 9 9 C 1.37468 * 125.80100 * 156.44478 * 8 6 5 10 10 C 1.40651 * 107.55694 * 179.97438 * 9 8 6 11 11 S 1.76024 * 142.39793 * 179.97438 * 10 9 8 12 12 C 1.75596 * 91.31153 * 180.02562 * 11 10 9 13 13 C 1.32776 * 110.47210 * 359.97438 * 12 11 10 14 14 C 1.38250 * 108.03324 * 0.02562 * 10 9 8 15 15 N 1.37912 * 125.81260 * 336.13847 * 8 6 5 16 16 H 0.97001 * 125.68069 * 0.02592 * 15 8 6 17 17 C 1.46929 * 118.73645 * 306.63989 * 5 4 2 18 18 C 1.52763 * 109.00568 * 53.31352 * 17 5 4 19 19 C 1.53035 * 109.38533 * 305.58429 * 18 17 5 20 20 H 1.09001 * 109.46075 * 181.25823 * 19 18 17 21 21 N 1.46499 * 109.45983 * 301.21985 * 19 18 17 22 22 C 1.36932 * 120.00340 * 275.06438 * 21 19 18 23 23 H 1.08002 * 119.99692 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00177 * 179.97438 * 22 21 19 25 25 N 1.31612 * 120.00451 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99814 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47310 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47362 * 120.00451 * 26 24 22 29 29 H 1.48501 * 109.47125 * 240.00061 * 26 24 22 30 30 H 1.08999 * 109.47107 * 299.91758 * 1 2 3 31 31 H 1.09006 * 109.46956 * 59.91611 * 1 2 3 32 32 H 1.08999 * 109.47214 * 179.91180 * 1 2 3 33 33 H 1.09002 * 109.58386 * 54.80347 * 4 2 1 34 34 H 1.09001 * 109.70407 * 294.44429 * 4 2 1 35 35 H 1.08005 * 126.22092 * 359.94747 * 9 8 6 36 36 H 1.07998 * 124.76467 * 179.97438 * 12 11 10 37 37 H 1.07995 * 122.15823 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.58105 * 173.14329 * 17 5 4 39 39 H 1.08996 * 109.58939 * 293.57321 * 17 5 4 40 40 H 1.08994 * 109.56340 * 185.54616 * 18 17 5 41 41 H 1.09005 * 109.38869 * 65.51237 * 18 17 5 42 42 H 0.97000 * 119.99932 * 95.06977 * 21 19 18 43 43 H 0.97000 * 120.00748 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3856 2.1779 7 8 3.7824 0.2181 3.1099 8 6 5.7248 -0.6303 2.1523 9 6 6.6772 0.1069 2.8151 10 6 7.9310 -0.4608 2.5250 11 16 9.6517 -0.2821 2.8501 12 6 10.0273 -1.6702 1.8424 13 6 8.9165 -2.1864 1.3301 14 6 7.7280 -1.5404 1.6856 15 7 6.3597 -1.6429 1.4641 16 1 5.9240 -2.3132 0.9147 17 6 4.1055 -1.4216 -0.0333 18 6 3.5708 -0.6950 -1.2660 19 6 2.0408 -0.7230 -1.2484 20 1 1.6582 -0.2243 -2.1389 21 7 1.5783 -2.1130 -1.2310 22 6 1.4481 -2.8061 -2.4048 23 1 1.6867 -2.3281 -3.3434 24 6 1.0104 -4.1232 -2.3881 25 7 0.7200 -4.7059 -1.2443 26 14 0.8334 -5.0689 -3.9894 27 1 1.2191 -4.1944 -5.1260 28 1 1.7171 -6.2620 -3.9600 29 1 -0.5773 -5.5019 -4.1552 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8893 32 1 -0.3633 -1.0276 -0.0016 33 1 1.6053 -1.7217 1.2979 34 1 1.7637 -0.1602 2.1402 35 1 6.4958 0.9661 3.4439 36 1 11.0223 -2.0506 1.6642 37 1 8.9300 -3.0483 0.6796 38 1 5.1895 -1.3159 0.0100 39 1 3.8412 -2.4774 -0.0916 40 1 3.9334 -1.1895 -2.1671 41 1 3.9159 0.3390 -1.2547 42 1 1.3643 -2.5423 -0.3879 43 1 0.4138 -5.6262 -1.2327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036246071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:32 Heat of formation + Delta-G solvation = 45.890428 kcal Electronic energy + Delta-G solvation = -26663.046862 eV Core-core repulsion = 23028.647436 eV Total energy + Delta-G solvation = -3634.399426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.64836 -40.95865 -39.12682 -36.43960 -35.87449 -34.50886 -33.09141 -32.04936 -31.01887 -29.70234 -27.55449 -26.65221 -25.43614 -24.16330 -23.22070 -23.12841 -21.68562 -20.59283 -19.97536 -19.29596 -18.94490 -17.71870 -17.13294 -16.78232 -16.51693 -16.34191 -15.98825 -15.71910 -15.40420 -15.18187 -14.99055 -14.92548 -14.60866 -14.41243 -14.24224 -13.86123 -13.62485 -13.11725 -13.01347 -12.90864 -12.82417 -12.72873 -12.54851 -12.42929 -12.07452 -12.00483 -11.96011 -11.75051 -11.61613 -11.29662 -11.18569 -10.90535 -10.73954 -9.79427 -9.10495 -8.94623 -8.64207 -7.90387 -5.16773 -0.24619 0.58129 0.84890 1.14836 1.47721 1.50396 1.58010 1.64811 1.77241 1.85423 2.21061 2.58343 3.33926 3.43472 3.74771 3.78994 3.83736 3.91707 3.99650 4.02738 4.21486 4.31562 4.36481 4.46646 4.49505 4.53998 4.65892 4.75362 4.78303 4.87377 4.92713 4.98977 5.08270 5.10319 5.14546 5.21186 5.25458 5.41478 5.42852 5.53287 5.59447 5.61168 6.19185 6.26600 6.31322 6.88003 7.39475 8.14216 8.38558 9.32692 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014213 B = 0.003316 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.589450 B = 8442.649874 C = 9866.303190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.124 3.876 5 N -0.595 5.595 6 C 0.585 3.415 7 O -0.564 6.564 8 C -0.004 4.004 9 C -0.082 4.082 10 C -0.247 4.247 11 S 0.140 5.860 12 C -0.167 4.167 13 C -0.132 4.132 14 C 0.061 3.939 15 N -0.538 5.538 16 H 0.429 0.571 17 C 0.103 3.897 18 C -0.141 4.141 19 C 0.174 3.826 20 H 0.050 0.950 21 N -0.724 5.724 22 C -0.226 4.226 23 H 0.075 0.925 24 C -0.070 4.070 25 N -0.967 5.967 26 Si 0.961 3.039 27 H -0.267 1.267 28 H -0.298 1.298 29 H -0.301 1.301 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.208 0.792 37 H 0.163 0.837 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.374 0.626 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.596 8.954 4.978 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.103 0.897 4 C 0.002 3.998 5 N -0.326 5.326 6 C 0.374 3.626 7 O -0.443 6.443 8 C -0.118 4.118 9 C -0.113 4.113 10 C -0.367 4.367 11 S 0.399 5.601 12 C -0.303 4.303 13 C -0.165 4.165 14 C -0.059 4.059 15 N -0.146 5.146 16 H 0.274 0.726 17 C -0.019 4.019 18 C -0.182 4.182 19 C 0.065 3.935 20 H 0.068 0.932 21 N -0.365 5.365 22 C -0.358 4.358 23 H 0.093 0.907 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.792 3.208 27 H -0.192 1.192 28 H -0.226 1.226 29 H -0.229 1.229 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.175 0.825 36 H 0.225 0.775 37 H 0.181 0.819 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.208 0.792 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.055 10.095 5.997 21.537 hybrid contribution -1.773 -2.408 -1.648 3.414 sum 16.282 7.688 4.349 18.524 Atomic orbital electron populations 1.21599 0.93773 1.01631 1.01915 1.21635 0.96813 0.99333 0.94088 0.89657 1.21609 0.78127 1.00722 0.99371 1.48044 1.07244 1.59602 1.17697 1.17234 0.84564 0.78721 0.82044 1.90803 1.74273 1.43073 1.36190 1.20023 0.91687 0.95985 1.04116 1.20501 0.88053 1.01208 1.01523 1.22942 0.99498 1.04307 1.09918 1.83819 0.93511 1.31282 1.51463 1.25717 1.03250 0.99638 1.01716 1.19205 0.87912 1.03685 1.05704 1.18928 0.85148 0.99190 1.02593 1.42782 1.04444 1.26332 1.41083 0.72585 1.21993 0.97960 0.97953 0.84026 1.22307 0.98802 1.00075 0.96969 1.20416 0.91873 0.85322 0.95914 0.93213 1.42583 1.79062 1.09156 1.05672 1.19586 1.34748 0.93772 0.87677 0.90684 1.25345 1.03524 0.98415 0.98970 1.69793 1.53807 1.12858 1.25375 0.85246 0.76374 0.78634 0.80526 1.19193 1.22555 1.22934 0.91584 0.92127 0.93980 0.92399 0.89321 0.82540 0.77501 0.81944 0.88570 0.91605 0.90973 0.91031 0.79221 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.06 71.98 0.65 -3.35 16 2 C -0.10 -3.05 2.67 -10.72 -0.03 -3.08 16 3 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 4 C 0.12 4.07 5.43 86.36 0.47 4.54 16 5 N -0.60 -18.72 2.98 -824.67 -2.46 -21.17 16 6 C 0.58 19.22 7.61 86.38 0.66 19.88 16 7 O -0.56 -21.48 16.37 -4.43 -0.07 -21.55 16 8 C 0.00 -0.12 6.34 40.15 0.25 0.14 16 9 C -0.08 -2.23 10.68 22.68 0.24 -1.98 16 10 C -0.25 -5.97 7.26 22.86 0.17 -5.80 16 11 S 0.14 2.42 23.31 -56.49 -1.32 1.10 16 12 C -0.17 -2.24 11.13 66.64 0.74 -1.50 16 13 C -0.13 -2.23 10.16 21.49 0.22 -2.01 16 14 C 0.06 1.40 7.67 38.40 0.29 1.70 16 15 N -0.54 -13.30 4.88 -177.14 -0.86 -14.16 16 16 H 0.43 9.71 6.38 -92.71 -0.59 9.12 16 17 C 0.10 3.05 4.99 86.22 0.43 3.48 16 18 C -0.14 -4.27 5.76 30.53 0.18 -4.10 16 19 C 0.17 6.07 2.53 45.02 0.11 6.18 16 20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 21 N -0.72 -32.08 3.64 -322.82 -1.18 -33.25 16 22 C -0.23 -11.35 9.93 84.03 0.83 -10.51 16 23 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 25 N -0.97 -55.86 13.06 21.65 0.28 -55.58 16 26 Si 0.96 43.97 29.55 68.60 2.03 46.00 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 32 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 33 H 0.06 2.15 6.64 -2.39 -0.02 2.13 16 34 H 0.09 2.91 7.00 -2.39 -0.02 2.89 16 35 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 36 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 37 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.10 2.43 4.23 -2.39 -0.01 2.42 16 39 H 0.07 2.27 7.74 -2.39 -0.02 2.25 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.37 18.17 5.92 -92.71 -0.55 17.62 16 43 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -63.86 356.38 2.03 -61.83 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -0.08 Total: 36.51 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.69 Total: 0.28 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -4.21 Total: -124.17 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.07 Total: -21.55 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.32 Total: 1.10 kcal Total: -63.86 2.03 -61.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036246071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.720 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds