Wall clock time and date at job start Tue Mar 31 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49900 * 2 1 4 4 C 1.53191 * 109.50158 * 239.93527 * 2 1 3 5 5 N 1.46926 * 108.89542 * 185.34224 * 4 2 1 6 6 C 1.34777 * 120.63005 * 233.67771 * 5 4 2 7 7 O 1.21731 * 119.99767 * 356.38655 * 6 5 4 8 8 C 1.46407 * 120.00006 * 176.38469 * 6 5 4 9 9 C 1.35778 * 124.95972 * 225.89158 * 8 6 5 10 10 C 1.38872 * 115.18614 * 179.97438 * 9 8 6 11 11 N 1.39746 * 139.91297 * 180.02562 * 10 9 8 12 12 H 0.97003 * 125.62839 * 359.97438 * 11 10 9 13 13 C 1.36211 * 108.73384 * 179.97438 * 11 10 9 14 14 C 1.34508 * 109.29685 * 0.02562 * 13 11 10 15 15 C 1.38237 * 113.39203 * 0.02562 * 10 9 8 16 16 S 1.75621 * 124.96015 * 45.58829 * 8 6 5 17 17 C 1.47202 * 118.55422 * 53.54000 * 5 4 2 18 18 C 1.53191 * 108.85677 * 306.47670 * 17 5 4 19 19 C 1.53039 * 109.31183 * 54.65041 * 18 17 5 20 20 H 1.08994 * 109.44592 * 58.65181 * 19 18 17 21 21 N 1.46496 * 109.45935 * 178.61764 * 19 18 17 22 22 C 1.36939 * 120.00232 * 275.07014 * 21 19 18 23 23 H 1.08004 * 119.99686 * 0.02562 * 22 21 19 24 24 C 1.38815 * 120.00496 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99577 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00054 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47313 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47178 * 120.00124 * 26 24 22 29 29 H 1.48500 * 109.47104 * 239.99941 * 26 24 22 30 30 H 1.08997 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46970 * 300.06363 * 1 2 3 32 32 H 1.08994 * 109.47340 * 60.06647 * 1 2 3 33 33 H 1.09008 * 109.58196 * 305.19841 * 4 2 1 34 34 H 1.09001 * 109.58804 * 65.47978 * 4 2 1 35 35 H 1.08000 * 122.40644 * 359.94701 * 9 8 6 36 36 H 1.07996 * 125.35274 * 179.97438 * 13 11 10 37 37 H 1.08002 * 126.07732 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.53257 * 186.67436 * 17 5 4 39 39 H 1.09003 * 109.68106 * 66.36885 * 17 5 4 40 40 H 1.09008 * 109.49408 * 294.70215 * 18 17 5 41 41 H 1.08998 * 109.52760 * 174.62700 * 18 17 5 42 42 H 0.97002 * 120.00411 * 95.07474 * 21 19 18 43 43 H 0.96996 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5049 -0.8287 -1.1732 6 6 4.2790 -0.3842 -2.1829 7 8 3.7657 0.0497 -3.1979 8 6 5.7373 -0.4230 -2.0591 9 6 6.5732 0.5964 -2.3840 10 6 7.9234 0.3399 -2.1849 11 7 9.1636 0.9674 -2.3299 12 1 9.3060 1.8678 -2.6615 13 6 10.1394 0.1059 -1.9286 14 6 9.5766 -1.0497 -1.5322 15 6 8.1741 -0.9246 -1.6857 16 16 6.6603 -1.7924 -1.4615 17 6 4.1053 -1.4266 0.0304 18 6 3.5708 -0.6953 1.2659 19 6 2.0408 -0.7234 1.2482 20 1 1.6970 -1.7576 1.2347 21 7 1.5265 -0.0536 2.4452 22 6 1.3964 -0.7501 3.6171 23 1 1.6734 -1.7932 3.6588 24 6 0.9086 -0.1156 4.7513 25 7 0.5707 1.1554 4.7002 26 14 0.7318 -1.0657 6.3499 27 1 1.1772 -2.4673 6.1446 28 1 1.5686 -0.4296 7.3989 29 1 -0.6903 -1.0551 6.7773 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5128 -0.8905 33 1 1.6053 -1.7213 -1.2984 34 1 1.7616 -0.1587 -2.1391 35 1 6.2138 1.5389 -2.7699 36 1 11.1985 0.3171 -1.9293 37 1 10.1009 -1.9186 -1.1628 38 1 5.1896 -1.3245 -0.0140 39 1 3.8398 -2.4823 0.0874 40 1 3.9160 0.3386 1.2542 41 1 3.9335 -1.1897 2.1671 42 1 1.2781 0.8834 2.4079 43 1 0.2302 1.5989 5.4928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036283121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:39 Heat of formation + Delta-G solvation = 51.924989 kcal Electronic energy + Delta-G solvation = -26073.420187 eV Core-core repulsion = 22439.282439 eV Total energy + Delta-G solvation = -3634.137748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37380 -40.06202 -37.69474 -35.23298 -34.60202 -32.84360 -31.47369 -31.12941 -29.39228 -28.65174 -26.37945 -25.12740 -23.73805 -22.75521 -21.74234 -21.52510 -20.88577 -19.66617 -18.68861 -18.54787 -17.10002 -16.94182 -15.96445 -15.63622 -15.27992 -14.95793 -14.75846 -14.40485 -14.07022 -13.96372 -13.72439 -13.66562 -13.31359 -13.12387 -12.70327 -12.45120 -12.39430 -12.11623 -11.93149 -11.61182 -11.45173 -11.15135 -11.01544 -10.94056 -10.78600 -10.62076 -10.39861 -10.15808 -9.94160 -9.85147 -9.71919 -9.61276 -8.91100 -8.53265 -8.22600 -7.77019 -6.95492 -5.77392 -3.05847 0.50272 1.23917 1.81085 2.29192 2.46213 2.66405 3.00029 3.23221 3.42450 3.48378 3.50433 4.44136 4.57955 4.67859 4.75992 4.99673 5.11524 5.25500 5.26058 5.29168 5.39525 5.53496 5.56128 5.65461 5.69704 5.71647 5.79152 5.83693 5.96885 6.09021 6.16872 6.28957 6.32993 6.39211 6.44752 6.52043 6.53264 6.64191 6.82626 6.92842 7.06920 7.15960 7.44540 7.69789 8.13542 8.40887 9.52449 10.09963 10.44882 11.45221 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003068 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.608367 B = 9124.001466 C =10250.936943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.591 3.409 7 O -0.537 6.537 8 C -0.226 4.226 9 C -0.044 4.044 10 C 0.028 3.972 11 N -0.558 5.558 12 H 0.419 0.581 13 C 0.053 3.947 14 C -0.170 4.170 15 C -0.201 4.201 16 S 0.184 5.816 17 C 0.092 3.908 18 C -0.148 4.148 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.236 4.236 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.384 0.616 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.257 -3.307 -15.417 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.328 5.328 6 C 0.377 3.623 7 O -0.415 6.415 8 C -0.346 4.346 9 C -0.080 4.080 10 C -0.086 4.086 11 N -0.159 5.159 12 H 0.256 0.744 13 C -0.080 4.080 14 C -0.200 4.200 15 C -0.323 4.323 16 S 0.448 5.552 17 C -0.033 4.033 18 C -0.189 4.189 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.162 0.838 36 H 0.194 0.806 37 H 0.164 0.836 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.562 -4.513 -15.330 23.015 hybrid contribution 0.501 1.728 0.456 1.856 sum 17.063 -2.784 -14.874 22.807 Atomic orbital electron populations 1.21654 0.93986 1.01825 1.01871 1.21749 0.96640 1.00072 0.94550 0.91200 1.21764 0.77725 1.01126 0.99508 1.48099 1.07290 1.59627 1.17742 1.16900 0.84288 0.77864 0.83217 1.90819 1.74150 1.47452 1.29128 1.23669 0.97319 1.00173 1.13418 1.19088 0.88215 0.99985 1.00663 1.17950 0.87279 0.93188 1.10155 1.41898 1.03674 1.15366 1.54933 0.74368 1.21845 0.94019 0.90089 1.02053 1.20124 0.89861 0.99467 1.10502 1.23390 0.99275 0.98567 1.11056 1.83967 0.91778 1.14742 1.64745 1.22360 0.98636 0.97529 0.84741 1.22656 1.00214 1.00436 0.95632 1.20206 0.90345 0.95735 0.86398 0.93312 1.42414 1.76436 1.11438 1.05763 1.19268 1.35654 0.94144 0.87676 0.91144 1.24728 1.02130 0.96024 0.98046 1.69669 1.50103 1.09527 1.28757 0.86156 0.77282 0.78899 0.84088 1.20558 1.21971 1.21954 0.92994 0.90703 0.93801 0.91256 0.89230 0.83816 0.80606 0.83597 0.89553 0.90991 0.92157 0.90368 0.78225 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 37.16 0.34 -1.86 16 2 C -0.11 -1.83 2.46 -90.50 -0.22 -2.05 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.80 5.70 -3.71 -0.02 1.78 16 5 N -0.60 -8.94 2.98 -174.18 -0.52 -9.46 16 6 C 0.59 9.36 7.51 -12.97 -0.10 9.27 16 7 O -0.54 -9.90 16.51 5.16 0.09 -9.81 16 8 C -0.23 -3.11 5.42 -37.18 -0.20 -3.32 16 9 C -0.04 -0.56 10.10 -40.23 -0.41 -0.96 16 10 C 0.03 0.32 7.67 -84.02 -0.64 -0.33 16 11 N -0.56 -4.39 6.21 -10.90 -0.07 -4.46 16 12 H 0.42 2.00 8.96 -40.82 -0.37 1.64 16 13 C 0.05 0.37 11.85 -16.93 -0.20 0.17 16 14 C -0.17 -1.54 10.85 -39.60 -0.43 -1.97 16 15 C -0.20 -2.33 7.31 -38.29 -0.28 -2.61 16 16 S 0.18 2.17 20.07 -107.50 -2.16 0.01 16 17 C 0.09 1.29 5.87 -3.56 -0.02 1.27 16 18 C -0.15 -2.53 5.66 -26.61 -0.15 -2.69 16 19 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -17.21 4.41 -53.39 -0.24 -17.45 16 22 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 23 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 26 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.09 1.36 7.02 -51.93 -0.36 1.00 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.09 1.14 4.05 -30.52 -0.12 1.02 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.38 9.92 7.50 -40.82 -0.31 9.61 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -32.87 361.44 -10.22 -43.09 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.74 Total: 9.46 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.73 Total: -6.90 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.10 Total: -58.26 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.16 Total: 0.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.87 -10.22 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.011 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds