Wall clock time and date at job start Tue Mar 31 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.49900 * 2 1 4 4 C 1.53191 * 109.50158 * 239.93527 * 2 1 3 5 5 N 1.46926 * 108.89542 * 185.34224 * 4 2 1 6 6 C 1.34777 * 120.63005 * 233.67771 * 5 4 2 7 7 O 1.21731 * 119.99767 * 356.38655 * 6 5 4 8 8 C 1.46407 * 120.00006 * 176.38469 * 6 5 4 9 9 C 1.35778 * 124.95972 * 225.89158 * 8 6 5 10 10 C 1.38872 * 115.18614 * 179.97438 * 9 8 6 11 11 N 1.39746 * 139.91297 * 180.02562 * 10 9 8 12 12 H 0.97003 * 125.62839 * 359.97438 * 11 10 9 13 13 C 1.36211 * 108.73384 * 179.97438 * 11 10 9 14 14 C 1.34508 * 109.29685 * 0.02562 * 13 11 10 15 15 C 1.38237 * 113.39203 * 0.02562 * 10 9 8 16 16 S 1.75621 * 124.96015 * 45.58829 * 8 6 5 17 17 C 1.47202 * 118.55422 * 53.54000 * 5 4 2 18 18 C 1.53191 * 108.85677 * 306.47670 * 17 5 4 19 19 C 1.53039 * 109.31183 * 54.65041 * 18 17 5 20 20 H 1.08994 * 109.44592 * 58.65181 * 19 18 17 21 21 N 1.46496 * 109.45935 * 178.61764 * 19 18 17 22 22 C 1.36939 * 120.00232 * 275.07014 * 21 19 18 23 23 H 1.08004 * 119.99686 * 0.02562 * 22 21 19 24 24 C 1.38815 * 120.00496 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99577 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00054 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47313 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47178 * 120.00124 * 26 24 22 29 29 H 1.48500 * 109.47104 * 239.99941 * 26 24 22 30 30 H 1.08997 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46970 * 300.06363 * 1 2 3 32 32 H 1.08994 * 109.47340 * 60.06647 * 1 2 3 33 33 H 1.09008 * 109.58196 * 305.19841 * 4 2 1 34 34 H 1.09001 * 109.58804 * 65.47978 * 4 2 1 35 35 H 1.08000 * 122.40644 * 359.94701 * 9 8 6 36 36 H 1.07996 * 125.35274 * 179.97438 * 13 11 10 37 37 H 1.08002 * 126.07732 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.53257 * 186.67436 * 17 5 4 39 39 H 1.09003 * 109.68106 * 66.36885 * 17 5 4 40 40 H 1.09008 * 109.49408 * 294.70215 * 18 17 5 41 41 H 1.08998 * 109.52760 * 174.62700 * 18 17 5 42 42 H 0.97002 * 120.00411 * 95.07474 * 21 19 18 43 43 H 0.96996 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5049 -0.8287 -1.1732 6 6 4.2790 -0.3842 -2.1829 7 8 3.7657 0.0497 -3.1979 8 6 5.7373 -0.4230 -2.0591 9 6 6.5732 0.5964 -2.3840 10 6 7.9234 0.3399 -2.1849 11 7 9.1636 0.9674 -2.3299 12 1 9.3060 1.8678 -2.6615 13 6 10.1394 0.1059 -1.9286 14 6 9.5766 -1.0497 -1.5322 15 6 8.1741 -0.9246 -1.6857 16 16 6.6603 -1.7924 -1.4615 17 6 4.1053 -1.4266 0.0304 18 6 3.5708 -0.6953 1.2659 19 6 2.0408 -0.7234 1.2482 20 1 1.6970 -1.7576 1.2347 21 7 1.5265 -0.0536 2.4452 22 6 1.3964 -0.7501 3.6171 23 1 1.6734 -1.7932 3.6588 24 6 0.9086 -0.1156 4.7513 25 7 0.5707 1.1554 4.7002 26 14 0.7318 -1.0657 6.3499 27 1 1.1772 -2.4673 6.1446 28 1 1.5686 -0.4296 7.3989 29 1 -0.6903 -1.0551 6.7773 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5128 -0.8905 33 1 1.6053 -1.7213 -1.2984 34 1 1.7616 -0.1587 -2.1391 35 1 6.2138 1.5389 -2.7699 36 1 11.1985 0.3171 -1.9293 37 1 10.1009 -1.9186 -1.1628 38 1 5.1896 -1.3245 -0.0140 39 1 3.8398 -2.4823 0.0874 40 1 3.9160 0.3386 1.2542 41 1 3.9335 -1.1897 2.1671 42 1 1.2781 0.8834 2.4079 43 1 0.2302 1.5989 5.4928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036283121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:38 Heat of formation + Delta-G solvation = 31.269395 kcal Electronic energy + Delta-G solvation = -26074.315881 eV Core-core repulsion = 22439.282439 eV Total energy + Delta-G solvation = -3635.033442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10370 -41.29928 -39.08726 -36.20296 -36.13326 -34.44746 -33.08021 -31.82542 -31.08936 -29.63422 -27.56181 -26.72589 -25.01509 -24.12355 -23.11372 -22.47406 -21.64474 -21.05534 -19.70588 -19.52976 -19.01404 -18.02645 -17.15475 -16.75372 -16.50827 -16.36793 -15.72804 -15.63227 -15.41639 -15.33096 -15.03408 -14.89848 -14.50192 -14.21180 -13.98189 -13.81264 -13.47960 -13.28923 -13.04483 -12.96462 -12.87360 -12.78919 -12.51586 -12.37472 -12.10660 -12.06255 -11.91018 -11.83442 -11.64984 -11.19284 -11.15462 -10.85883 -10.61217 -9.78793 -9.08671 -8.93464 -8.56131 -7.89558 -5.17094 -0.40452 0.34426 0.93634 1.43774 1.49969 1.50402 1.60003 1.67748 1.75061 2.05942 2.24589 2.59509 3.40303 3.44497 3.78490 3.81108 3.95479 4.00125 4.07194 4.17419 4.22584 4.29816 4.35832 4.47080 4.57013 4.65638 4.71909 4.76734 4.79629 4.81825 4.95620 4.99798 5.01843 5.06965 5.18777 5.29065 5.39727 5.48911 5.57440 5.58805 5.61357 5.81892 6.23441 6.32035 6.62803 6.92855 7.38555 8.14019 8.37676 9.34275 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.003068 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.608367 B = 9124.001466 C =10250.936943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.127 3.873 5 N -0.597 5.597 6 C 0.592 3.408 7 O -0.571 6.571 8 C -0.264 4.264 9 C -0.037 4.037 10 C -0.002 4.002 11 N -0.548 5.548 12 H 0.434 0.566 13 C 0.085 3.915 14 C -0.198 4.198 15 C -0.210 4.210 16 S 0.191 5.809 17 C 0.100 3.900 18 C -0.138 4.138 19 C 0.180 3.820 20 H 0.052 0.948 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.298 1.298 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.225 0.775 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.370 0.630 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.947 -4.666 -16.156 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.004 3.996 5 N -0.328 5.328 6 C 0.380 3.620 7 O -0.452 6.452 8 C -0.383 4.383 9 C -0.073 4.073 10 C -0.115 4.115 11 N -0.150 5.150 12 H 0.274 0.726 13 C -0.050 4.050 14 C -0.227 4.227 15 C -0.333 4.333 16 S 0.455 5.545 17 C -0.023 4.023 18 C -0.179 4.179 19 C 0.071 3.929 20 H 0.070 0.930 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.225 1.225 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.163 0.837 36 H 0.242 0.758 37 H 0.182 0.818 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.202 0.798 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.268 -5.901 -16.101 25.794 hybrid contribution -0.135 2.182 0.596 2.266 sum 19.133 -3.719 -15.506 24.906 Atomic orbital electron populations 1.21567 0.93572 1.02212 1.01312 1.21610 0.96917 0.99060 0.94407 0.92908 1.21703 0.77941 1.01861 0.98077 1.48142 1.07303 1.59497 1.17822 1.17169 0.85216 0.76904 0.82698 1.90784 1.75072 1.48992 1.30363 1.23479 0.96377 1.01893 1.16598 1.19231 0.89063 0.99699 0.99277 1.17935 0.87806 0.93935 1.11871 1.42042 1.02673 1.16204 1.54046 0.72587 1.22664 0.95639 0.88567 0.98090 1.20551 0.88801 1.01325 1.12017 1.23776 1.00252 0.98556 1.10693 1.83711 0.92056 1.13918 1.64842 1.22342 0.99322 0.97911 0.82762 1.22444 0.98620 0.99815 0.97017 1.20421 0.91338 0.95562 0.85542 0.92970 1.42590 1.76757 1.10897 1.06703 1.19646 1.33447 0.94464 0.88413 0.90322 1.25486 1.03242 0.96922 1.01277 1.69828 1.52143 1.11168 1.29142 0.85150 0.76538 0.78418 0.80159 1.18764 1.22549 1.22543 0.92075 0.93957 0.91613 0.89259 0.89396 0.83743 0.75844 0.81838 0.88313 0.88912 0.93904 0.91125 0.79779 0.94326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.02 71.98 0.65 -3.52 16 2 C -0.10 -3.32 2.46 -10.72 -0.03 -3.35 16 3 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 4 C 0.13 3.66 5.70 86.36 0.49 4.15 16 5 N -0.60 -17.60 2.98 -823.18 -2.46 -20.06 16 6 C 0.59 18.82 7.51 86.37 0.65 19.47 16 7 O -0.57 -21.36 16.51 -4.45 -0.07 -21.43 16 8 C -0.26 -7.26 5.42 23.83 0.13 -7.13 16 9 C -0.04 -0.92 10.10 21.85 0.22 -0.70 16 10 C 0.00 -0.05 7.67 38.03 0.29 0.24 16 11 N -0.55 -6.97 6.21 -188.39 -1.17 -8.14 16 12 H 0.43 2.81 8.96 -92.71 -0.83 1.97 16 13 C 0.09 0.81 11.85 83.16 0.99 1.79 16 14 C -0.20 -2.97 10.85 22.26 0.24 -2.73 16 15 C -0.21 -4.51 7.31 23.11 0.17 -4.34 16 16 S 0.19 4.33 20.07 -56.49 -1.13 3.20 16 17 C 0.10 2.73 5.87 86.31 0.51 3.23 16 18 C -0.14 -4.70 5.66 30.67 0.17 -4.53 16 19 C 0.18 6.79 2.19 45.02 0.10 6.89 16 20 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 21 N -0.73 -35.58 4.41 -322.82 -1.42 -37.00 16 22 C -0.23 -12.18 9.93 84.03 0.83 -11.35 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 25 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 26 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.64 7.36 -2.38 -0.02 1.63 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.09 2.63 7.02 -2.39 -0.02 2.61 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 37 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.10 2.52 4.05 -16.00 -0.06 2.45 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.37 19.89 7.50 -92.71 -0.70 19.19 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -72.91 361.44 1.41 -71.50 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.52 Total: 28.91 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.88 Total: -5.76 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -4.77 Total: -124.06 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.13 Total: 3.20 kcal Total: -72.91 1.41 -71.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.769 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds