Wall clock time and date at job start Tue Mar 31 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.52281 * 2 1 4 4 C 1.53193 * 109.49845 * 239.92835 * 2 1 3 5 5 N 1.46927 * 108.77591 * 185.40912 * 4 2 1 6 6 C 1.34769 * 120.62951 * 233.62313 * 5 4 2 7 7 O 1.21735 * 119.99704 * 173.64995 * 6 5 4 8 8 C 1.46405 * 120.00428 * 353.65914 * 6 5 4 9 9 C 1.35780 * 124.96365 * 148.47226 * 8 6 5 10 10 C 1.38870 * 115.18666 * 179.97438 * 9 8 6 11 11 N 1.39748 * 139.91503 * 180.02562 * 10 9 8 12 12 H 0.96998 * 125.62986 * 359.97438 * 11 10 9 13 13 C 1.36216 * 108.73281 * 179.97438 * 11 10 9 14 14 C 1.34503 * 109.29631 * 359.97438 * 13 11 10 15 15 C 1.38238 * 113.39482 * 359.97438 * 10 9 8 16 16 S 1.75621 * 124.95516 * 328.16495 * 8 6 5 17 17 C 1.46922 * 118.73606 * 53.60752 * 5 4 2 18 18 C 1.53195 * 108.77663 * 306.38850 * 17 5 4 19 19 C 1.53034 * 109.31188 * 54.63807 * 18 17 5 20 20 H 1.09002 * 109.46098 * 178.63108 * 19 18 17 21 21 N 1.46503 * 109.46315 * 58.65431 * 19 18 17 22 22 C 1.36943 * 119.99586 * 84.99733 * 21 19 18 23 23 H 1.07996 * 120.00295 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99605 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00144 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00021 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47071 * 270.00394 * 26 24 22 28 28 H 1.48500 * 109.46799 * 30.00200 * 26 24 22 29 29 H 1.48504 * 109.47071 * 150.00126 * 26 24 22 30 30 H 1.09003 * 109.46983 * 299.91208 * 1 2 3 31 31 H 1.08996 * 109.47485 * 59.91494 * 1 2 3 32 32 H 1.09004 * 109.46662 * 179.91530 * 1 2 3 33 33 H 1.08996 * 109.58839 * 65.61860 * 4 2 1 34 34 H 1.08999 * 109.58031 * 305.19374 * 4 2 1 35 35 H 1.07994 * 122.40762 * 359.97438 * 9 8 6 36 36 H 1.07998 * 125.34985 * 179.97438 * 13 11 10 37 37 H 1.08011 * 126.07090 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.58844 * 186.60401 * 17 5 4 39 39 H 1.08998 * 109.58998 * 66.17747 * 17 5 4 40 40 H 1.09000 * 109.49804 * 294.68689 * 18 17 5 41 41 H 1.08997 * 109.49826 * 174.59009 * 18 17 5 42 42 H 0.97002 * 120.00195 * 265.00359 * 21 19 18 43 43 H 0.97003 * 119.99957 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8288 -1.1698 6 6 4.2811 -0.3853 -2.1781 7 8 5.4919 -0.3711 -2.0530 8 6 3.6684 0.0798 -3.4238 9 6 4.1745 1.0532 -4.2238 10 6 3.4258 1.3336 -5.3593 11 7 3.4484 2.1767 -6.4736 12 1 4.1326 2.8357 -6.6698 13 6 2.3510 1.9200 -7.2386 14 6 1.6247 0.9461 -6.6614 15 6 2.2860 0.5594 -5.4702 16 16 2.1755 -0.5453 -4.1054 17 6 4.1053 -1.4265 0.0305 18 6 3.5709 -0.6949 1.2658 19 6 2.0409 -0.7231 1.2482 20 1 1.6583 -0.2243 2.1387 21 7 1.5784 -2.1131 1.2306 22 6 1.4470 -2.8059 2.4045 23 1 1.6839 -2.3275 3.3433 24 6 1.0094 -4.1231 2.3877 25 7 0.7211 -4.7063 1.2435 26 14 0.8294 -5.0680 3.9890 27 1 2.1067 -5.7571 4.3033 28 1 0.4932 -4.1244 5.0854 29 1 -0.2548 -6.0734 3.8513 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.7637 -0.1577 -2.1389 34 1 1.6053 -1.7214 -1.2981 35 1 5.0932 1.5721 -3.9936 36 1 2.1031 2.4200 -8.1632 37 1 0.7013 0.5325 -7.0394 38 1 5.1896 -1.3244 -0.0140 39 1 3.8377 -2.4816 0.0864 40 1 3.9159 0.3389 1.2540 41 1 3.9335 -1.1897 2.1668 42 1 1.3654 -2.5427 0.3874 43 1 0.4156 -5.6269 1.2318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036283122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:42 Heat of formation + Delta-G solvation = 55.430102 kcal Electronic energy + Delta-G solvation = -26551.268912 eV Core-core repulsion = 22917.283157 eV Total energy + Delta-G solvation = -3633.985755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30359 -39.98225 -37.75640 -35.12485 -34.21173 -32.62210 -31.73233 -31.04851 -29.45210 -28.14549 -26.23894 -25.21824 -23.93914 -23.13755 -21.93063 -21.25851 -20.66867 -19.30395 -18.60445 -17.99705 -17.35206 -16.75582 -15.78266 -15.53153 -15.25149 -14.80500 -14.48591 -14.39357 -14.17051 -13.95763 -13.81944 -13.56614 -13.27340 -12.92133 -12.73552 -12.56019 -12.16243 -12.01373 -11.92484 -11.43645 -11.38444 -11.11257 -10.93204 -10.86802 -10.68861 -10.49667 -10.28733 -10.21195 -9.95322 -9.77305 -9.70700 -9.50813 -8.90419 -8.32104 -8.09798 -7.66690 -6.95498 -5.77158 -3.05332 0.54577 1.38553 1.94721 2.33165 2.52526 2.77834 3.21759 3.38503 3.43669 3.49508 3.50541 4.55956 4.59650 4.72350 4.84109 5.06576 5.13009 5.29069 5.32185 5.41976 5.62225 5.62714 5.65838 5.74249 5.80050 5.84690 5.90768 5.92900 5.97567 6.11582 6.24822 6.35641 6.37636 6.44905 6.52510 6.58347 6.62761 6.75288 6.80422 6.95359 7.01183 7.21507 7.66725 7.71082 8.31773 8.41429 9.53113 10.09292 10.44512 11.45297 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.003154 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.736979 B = 8875.869903 C = 9344.143239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.067 0.933 4 C 0.097 3.903 5 N -0.593 5.593 6 C 0.587 3.413 7 O -0.541 6.541 8 C -0.229 4.229 9 C -0.043 4.043 10 C 0.025 3.975 11 N -0.560 5.560 12 H 0.418 0.582 13 C 0.052 3.948 14 C -0.170 4.170 15 C -0.207 4.207 16 S 0.198 5.802 17 C 0.121 3.879 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 15.235 -16.182 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 H 0.085 0.915 4 C -0.027 4.027 5 N -0.324 5.324 6 C 0.374 3.626 7 O -0.421 6.421 8 C -0.350 4.350 9 C -0.079 4.079 10 C -0.088 4.088 11 N -0.161 5.161 12 H 0.255 0.745 13 C -0.082 4.082 14 C -0.199 4.199 15 C -0.328 4.328 16 S 0.463 5.537 17 C 0.000 4.000 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.209 1.209 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.162 0.838 36 H 0.193 0.807 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.740 14.125 -15.496 21.040 hybrid contribution 1.094 0.669 -0.006 1.283 sum 2.834 14.794 -15.502 21.615 Atomic orbital electron populations 1.21685 0.94006 1.03350 1.00567 1.21677 0.96599 0.98839 0.95410 0.91464 1.22275 0.79018 1.02374 0.99036 1.47975 1.07081 1.59265 1.18063 1.16887 0.86179 0.77623 0.81876 1.90799 1.13427 1.56185 1.81676 1.23809 1.02581 1.06368 1.02211 1.19118 0.99849 0.97951 0.90981 1.17982 0.98886 0.98680 0.93288 1.41886 1.22471 1.33124 1.18617 0.74508 1.21830 0.88197 1.00331 0.97804 1.20136 1.02625 1.01995 0.95192 1.23624 1.01089 1.05033 1.03061 1.84350 1.19716 1.38166 1.11518 1.21634 0.97849 0.98120 0.82437 1.22525 1.00097 0.98807 0.97566 1.20229 0.90934 0.87345 0.94693 0.93006 1.42468 1.78988 1.07711 1.06930 1.19210 1.37082 0.93892 0.86551 0.91256 1.24695 1.02327 0.97165 0.96589 1.69644 1.51807 1.12989 1.23616 0.86238 0.77260 0.79823 0.83129 1.21853 1.20884 1.21909 0.92667 0.93662 0.90887 0.89599 0.89901 0.83812 0.80709 0.83626 0.90169 0.89724 0.93305 0.90683 0.78142 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.05 37.16 0.34 -1.77 16 2 C -0.11 -1.67 2.67 -90.50 -0.24 -1.92 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.10 1.55 4.48 -3.71 -0.02 1.54 16 5 N -0.59 -10.20 2.97 -174.41 -0.52 -10.72 16 6 C 0.59 10.29 7.55 -12.98 -0.10 10.19 16 7 O -0.54 -10.86 16.39 5.16 0.08 -10.77 16 8 C -0.23 -3.42 5.64 -37.18 -0.21 -3.63 16 9 C -0.04 -0.57 10.00 -40.23 -0.40 -0.97 16 10 C 0.03 0.30 7.67 -84.02 -0.64 -0.35 16 11 N -0.56 -4.54 6.21 -10.90 -0.07 -4.61 16 12 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 13 C 0.05 0.37 11.85 -16.93 -0.20 0.17 16 14 C -0.17 -1.64 10.84 -39.61 -0.43 -2.07 16 15 C -0.21 -2.54 7.31 -38.29 -0.28 -2.82 16 16 S 0.20 2.63 19.53 -107.50 -2.10 0.53 16 17 C 0.12 2.22 6.18 -3.71 -0.02 2.19 16 18 C -0.15 -2.64 5.78 -26.61 -0.15 -2.80 16 19 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.49 3.64 -53.39 -0.19 -16.69 16 22 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 26 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.30 7.54 -51.93 -0.39 0.90 16 33 H 0.09 1.23 4.04 -26.71 -0.11 1.13 16 34 H 0.08 1.46 6.64 -51.93 -0.34 1.12 16 35 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 39 H 0.08 1.75 7.74 -51.93 -0.40 1.35 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.38 9.35 5.93 -40.82 -0.24 9.11 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -31.96 356.61 -10.07 -42.03 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.56 Total: 10.04 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.78 Total: -5.80 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.06 Total: -58.27 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.10 Total: 0.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.96 -10.07 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.458 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds