Wall clock time and date at job start Tue Mar 31 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.49820 * 2 1 4 4 C 1.53626 * 109.45865 * 120.20479 * 2 1 3 5 5 N 1.46919 * 108.54358 * 174.74124 * 4 2 1 6 6 C 1.34782 * 120.63358 * 126.37357 * 5 4 2 7 7 O 1.21734 * 119.99610 * 3.31430 * 6 5 4 8 8 C 1.46411 * 120.00080 * 183.31897 * 6 5 4 9 9 C 1.35781 * 124.95623 * 134.33707 * 8 6 5 10 10 C 1.38869 * 115.18281 * 180.02562 * 9 8 6 11 11 N 1.39741 * 139.91175 * 180.02562 * 10 9 8 12 12 H 0.97004 * 125.63667 * 0.02562 * 11 10 9 13 13 C 1.36220 * 108.73354 * 179.97438 * 11 10 9 14 14 C 1.34505 * 109.29506 * 359.97438 * 13 11 10 15 15 C 1.38243 * 113.39487 * 0.26819 * 10 9 8 16 16 S 1.75611 * 124.96221 * 314.35438 * 8 6 5 17 17 C 1.46931 * 118.74136 * 306.09285 * 5 4 2 18 18 C 1.53196 * 108.76953 * 53.86240 * 17 5 4 19 19 C 1.53038 * 109.31329 * 305.36145 * 18 17 5 20 20 H 1.08995 * 109.46190 * 301.34912 * 19 18 17 21 21 N 1.46503 * 109.45972 * 181.38655 * 19 18 17 22 22 C 1.36938 * 119.99579 * 85.00644 * 21 19 18 23 23 H 1.07997 * 120.00128 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99668 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99849 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47046 * 89.99774 * 26 24 22 28 28 H 1.48501 * 109.46997 * 209.99868 * 26 24 22 29 29 H 1.48501 * 109.47307 * 329.99802 * 26 24 22 30 30 H 1.09003 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47444 * 300.06368 * 1 2 3 32 32 H 1.08997 * 109.47129 * 60.06803 * 1 2 3 33 33 H 1.09006 * 109.73673 * 55.00312 * 4 2 1 34 34 H 1.08997 * 109.66756 * 294.43846 * 4 2 1 35 35 H 1.07997 * 122.40884 * 359.97438 * 9 8 6 36 36 H 1.08003 * 125.35085 * 180.02562 * 13 11 10 37 37 H 1.08004 * 126.07459 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.59011 * 173.64858 * 17 5 4 39 39 H 1.08995 * 109.58639 * 294.07783 * 17 5 4 40 40 H 1.08998 * 109.50085 * 65.31784 * 18 17 5 41 41 H 1.09004 * 109.49243 * 185.41321 * 18 17 5 42 42 H 0.96999 * 120.00175 * 265.00108 * 21 19 18 43 43 H 0.97002 * 119.99813 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7287 1.2519 5 7 3.5052 -0.8282 1.1690 6 6 4.2818 -0.3853 2.1776 7 8 3.7709 0.0473 3.1944 8 6 5.7399 -0.4243 2.0503 9 6 6.5770 0.5930 2.3788 10 6 7.9266 0.3368 2.1754 11 7 9.1675 0.9625 2.3217 12 1 9.3113 1.8607 2.6587 13 6 10.1420 0.1024 1.9141 14 6 9.5776 -1.0506 1.5125 15 6 8.1751 -0.9228 1.6629 16 16 6.6613 -1.7935 1.4501 17 6 4.1059 -1.4255 -0.0315 18 6 3.5708 -0.6939 -1.2665 19 6 2.0408 -0.7228 -1.2485 20 1 1.6972 -1.7571 -1.2355 21 7 1.5259 -0.0528 -2.4453 22 6 1.3945 -0.7494 -3.6169 23 1 1.6708 -1.7926 -3.6587 24 6 0.9071 -0.1145 -4.7510 25 7 0.5708 1.1570 -4.7001 26 14 0.7285 -1.0646 -6.3493 27 1 -0.6234 -1.6758 -6.4134 28 1 0.9088 -0.1401 -7.4975 29 1 1.7581 -2.1331 -6.4078 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6095 -1.7284 1.2984 34 1 1.7635 -0.1664 2.1431 35 1 6.2189 1.5340 2.7694 36 1 11.2013 0.3128 1.9143 37 1 10.1006 -1.9176 1.1367 38 1 5.1901 -1.3229 0.0127 39 1 3.8386 -2.4807 -0.0875 40 1 3.9154 0.3401 -1.2546 41 1 3.9334 -1.1884 -2.1677 42 1 1.2780 0.8843 -2.4078 43 1 0.2306 1.6008 -5.4927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036283123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:47 Heat of formation + Delta-G solvation = 52.228491 kcal Electronic energy + Delta-G solvation = -26076.658133 eV Core-core repulsion = 22442.533546 eV Total energy + Delta-G solvation = -3634.124587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37364 -40.06891 -37.68531 -35.23271 -34.61069 -32.83228 -31.46438 -31.12929 -29.38548 -28.65341 -26.38131 -25.12103 -23.73421 -22.75263 -21.73906 -21.52528 -20.88500 -19.66343 -18.69035 -18.54642 -17.09736 -16.94259 -15.96682 -15.63613 -15.28009 -14.95064 -14.75839 -14.40581 -14.06344 -13.96121 -13.72970 -13.66415 -13.30977 -13.12342 -12.70043 -12.45134 -12.39527 -12.11632 -11.92926 -11.61068 -11.45214 -11.14565 -11.01225 -10.92511 -10.78514 -10.61301 -10.39666 -10.19026 -9.93889 -9.85061 -9.71683 -9.61077 -8.90454 -8.52623 -8.22394 -7.76805 -6.95323 -5.77034 -3.05515 0.50212 1.23876 1.81188 2.29159 2.46195 2.66621 3.00516 3.23381 3.42937 3.48380 3.49828 4.44505 4.58181 4.67866 4.76000 4.99699 5.11956 5.25357 5.26008 5.29267 5.40012 5.53544 5.56221 5.65761 5.69774 5.71746 5.79202 5.83776 5.96953 6.08985 6.17131 6.28969 6.33273 6.39754 6.44915 6.52105 6.53541 6.64648 6.83048 6.93250 7.07278 7.15967 7.44756 7.69509 8.13723 8.41230 9.52723 10.10243 10.45217 11.45510 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003071 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.461838 B = 9113.880812 C =10243.740633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.590 3.410 7 O -0.537 6.537 8 C -0.226 4.226 9 C -0.044 4.044 10 C 0.028 3.972 11 N -0.558 5.558 12 H 0.419 0.581 13 C 0.053 3.947 14 C -0.170 4.170 15 C -0.201 4.201 16 S 0.184 5.816 17 C 0.091 3.909 18 C -0.148 4.148 19 C 0.183 3.817 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.177 0.823 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.275 -3.298 15.396 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.377 3.623 7 O -0.416 6.416 8 C -0.346 4.346 9 C -0.079 4.079 10 C -0.086 4.086 11 N -0.159 5.159 12 H 0.256 0.744 13 C -0.080 4.080 14 C -0.200 4.200 15 C -0.323 4.323 16 S 0.448 5.552 17 C -0.033 4.033 18 C -0.189 4.189 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.162 0.838 36 H 0.194 0.806 37 H 0.164 0.836 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.584 -4.492 15.306 23.011 hybrid contribution 0.495 1.710 -0.454 1.837 sum 17.079 -2.782 14.851 22.803 Atomic orbital electron populations 1.21657 0.94025 1.01812 1.01876 1.21829 0.96608 1.00030 0.94512 0.91176 1.21863 0.77653 1.01085 0.99506 1.48042 1.07275 1.59678 1.17721 1.16916 0.84282 0.77896 0.83231 1.90819 1.74274 1.47481 1.28989 1.23669 0.97322 1.00211 1.13398 1.19089 0.88202 1.00024 1.00622 1.17951 0.87279 0.93390 1.09956 1.41900 1.03685 1.15577 1.54712 0.74369 1.21848 0.94042 0.90116 1.02001 1.20123 0.89835 0.99532 1.10460 1.23392 0.99287 0.98613 1.10997 1.83965 0.91854 1.14507 1.64880 1.22331 0.98676 0.97516 0.84821 1.22657 1.00198 1.00423 0.95649 1.20209 0.90350 0.95732 0.86404 0.93321 1.42406 1.76434 1.11403 1.05797 1.19222 1.35794 0.94092 0.87712 0.91199 1.24724 1.02130 0.96002 0.98037 1.69659 1.50062 1.09468 1.28891 0.86226 0.77780 0.78687 0.83706 1.21791 1.21881 1.20775 0.93002 0.93797 0.90714 0.91218 0.89195 0.83814 0.80604 0.83596 0.89491 0.91033 0.92157 0.90397 0.78225 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.03 37.15 0.34 -1.87 16 2 C -0.11 -1.82 2.47 -90.28 -0.22 -2.04 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.80 5.74 -3.49 -0.02 1.78 16 5 N -0.60 -8.94 2.97 -174.14 -0.52 -9.45 16 6 C 0.59 9.35 7.50 -12.97 -0.10 9.26 16 7 O -0.54 -9.90 16.51 5.16 0.09 -9.81 16 8 C -0.23 -3.12 5.41 -37.17 -0.20 -3.32 16 9 C -0.04 -0.55 10.10 -40.23 -0.41 -0.96 16 10 C 0.03 0.32 7.67 -84.02 -0.64 -0.33 16 11 N -0.56 -4.39 6.21 -10.90 -0.07 -4.46 16 12 H 0.42 2.00 8.96 -40.82 -0.37 1.64 16 13 C 0.05 0.37 11.85 -16.92 -0.20 0.17 16 14 C -0.17 -1.54 10.84 -39.61 -0.43 -1.97 16 15 C -0.20 -2.33 7.31 -38.28 -0.28 -2.61 16 16 S 0.18 2.17 20.06 -107.50 -2.16 0.02 16 17 C 0.09 1.28 5.86 -3.71 -0.02 1.26 16 18 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 19 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -17.23 4.41 -53.38 -0.24 -17.46 16 22 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 26 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.37 7.02 -51.93 -0.36 1.00 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.18 0.50 8.06 -52.48 -0.42 0.08 16 37 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.09 1.15 4.02 -30.16 -0.12 1.03 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.38 9.93 7.50 -40.82 -0.31 9.62 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.86 361.39 -10.21 -43.07 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.73 Total: 9.53 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.73 Total: -6.94 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.09 Total: -58.30 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.16 Total: 0.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.86 -10.21 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.303 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds