Wall clock time and date at job start Tue Mar 31 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.49820 * 2 1 4 4 C 1.53626 * 109.45865 * 120.20479 * 2 1 3 5 5 N 1.46919 * 108.54358 * 174.74124 * 4 2 1 6 6 C 1.34782 * 120.63358 * 126.37357 * 5 4 2 7 7 O 1.21734 * 119.99610 * 3.31430 * 6 5 4 8 8 C 1.46411 * 120.00080 * 183.31897 * 6 5 4 9 9 C 1.35781 * 124.95623 * 134.33707 * 8 6 5 10 10 C 1.38869 * 115.18281 * 180.02562 * 9 8 6 11 11 N 1.39741 * 139.91175 * 180.02562 * 10 9 8 12 12 H 0.97004 * 125.63667 * 0.02562 * 11 10 9 13 13 C 1.36220 * 108.73354 * 179.97438 * 11 10 9 14 14 C 1.34505 * 109.29506 * 359.97438 * 13 11 10 15 15 C 1.38243 * 113.39487 * 0.26819 * 10 9 8 16 16 S 1.75611 * 124.96221 * 314.35438 * 8 6 5 17 17 C 1.46931 * 118.74136 * 306.09285 * 5 4 2 18 18 C 1.53196 * 108.76953 * 53.86240 * 17 5 4 19 19 C 1.53038 * 109.31329 * 305.36145 * 18 17 5 20 20 H 1.08995 * 109.46190 * 301.34912 * 19 18 17 21 21 N 1.46503 * 109.45972 * 181.38655 * 19 18 17 22 22 C 1.36938 * 119.99579 * 85.00644 * 21 19 18 23 23 H 1.07997 * 120.00128 * 359.97438 * 22 21 19 24 24 C 1.38816 * 119.99668 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99941 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99849 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47046 * 89.99774 * 26 24 22 28 28 H 1.48501 * 109.46997 * 209.99868 * 26 24 22 29 29 H 1.48501 * 109.47307 * 329.99802 * 26 24 22 30 30 H 1.09003 * 109.47447 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47444 * 300.06368 * 1 2 3 32 32 H 1.08997 * 109.47129 * 60.06803 * 1 2 3 33 33 H 1.09006 * 109.73673 * 55.00312 * 4 2 1 34 34 H 1.08997 * 109.66756 * 294.43846 * 4 2 1 35 35 H 1.07997 * 122.40884 * 359.97438 * 9 8 6 36 36 H 1.08003 * 125.35085 * 180.02562 * 13 11 10 37 37 H 1.08004 * 126.07459 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.59011 * 173.64858 * 17 5 4 39 39 H 1.08995 * 109.58639 * 294.07783 * 17 5 4 40 40 H 1.08998 * 109.50085 * 65.31784 * 18 17 5 41 41 H 1.09004 * 109.49243 * 185.41321 * 18 17 5 42 42 H 0.96999 * 120.00175 * 265.00108 * 21 19 18 43 43 H 0.97002 * 119.99813 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7287 1.2519 5 7 3.5052 -0.8282 1.1690 6 6 4.2818 -0.3853 2.1776 7 8 3.7709 0.0473 3.1944 8 6 5.7399 -0.4243 2.0503 9 6 6.5770 0.5930 2.3788 10 6 7.9266 0.3368 2.1754 11 7 9.1675 0.9625 2.3217 12 1 9.3113 1.8607 2.6587 13 6 10.1420 0.1024 1.9141 14 6 9.5776 -1.0506 1.5125 15 6 8.1751 -0.9228 1.6629 16 16 6.6613 -1.7935 1.4501 17 6 4.1059 -1.4255 -0.0315 18 6 3.5708 -0.6939 -1.2665 19 6 2.0408 -0.7228 -1.2485 20 1 1.6972 -1.7571 -1.2355 21 7 1.5259 -0.0528 -2.4453 22 6 1.3945 -0.7494 -3.6169 23 1 1.6708 -1.7926 -3.6587 24 6 0.9071 -0.1145 -4.7510 25 7 0.5708 1.1570 -4.7001 26 14 0.7285 -1.0646 -6.3493 27 1 -0.6234 -1.6758 -6.4134 28 1 0.9088 -0.1401 -7.4975 29 1 1.7581 -2.1331 -6.4078 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.6095 -1.7284 1.2984 34 1 1.7635 -0.1664 2.1431 35 1 6.2189 1.5340 2.7694 36 1 11.2013 0.3128 1.9143 37 1 10.1006 -1.9176 1.1367 38 1 5.1901 -1.3229 0.0127 39 1 3.8386 -2.4807 -0.0875 40 1 3.9154 0.3401 -1.2546 41 1 3.9334 -1.1884 -2.1677 42 1 1.2780 0.8843 -2.4078 43 1 0.2306 1.6008 -5.4927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036283123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:46 Heat of formation + Delta-G solvation = 31.587055 kcal Electronic energy + Delta-G solvation = -26077.553213 eV Core-core repulsion = 22442.533546 eV Total energy + Delta-G solvation = -3635.019667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10417 -41.30595 -39.07884 -36.21119 -36.13297 -34.44289 -33.06940 -31.82577 -31.08441 -29.63683 -27.56393 -26.71950 -25.01187 -24.12175 -23.11573 -22.47043 -21.64411 -21.05680 -19.70373 -19.53221 -19.01372 -18.02633 -17.15662 -16.74918 -16.50912 -16.36939 -15.72259 -15.63612 -15.41475 -15.33027 -15.03204 -14.89881 -14.50111 -14.21110 -13.98346 -13.81247 -13.47978 -13.29059 -13.04714 -12.96493 -12.85193 -12.77390 -12.51275 -12.37206 -12.12659 -12.09718 -11.90878 -11.83058 -11.64750 -11.18807 -11.15587 -10.84986 -10.61088 -9.78267 -9.08593 -8.93372 -8.55992 -7.89356 -5.16927 -0.40558 0.34341 0.93721 1.43678 1.50255 1.51022 1.59182 1.68374 1.75024 2.05916 2.24771 2.59685 3.40575 3.44527 3.78091 3.81447 3.95627 4.00375 4.07176 4.17410 4.22562 4.29922 4.35821 4.46996 4.56998 4.65705 4.71893 4.76618 4.79585 4.81801 4.95864 4.99835 5.01882 5.06961 5.18871 5.29285 5.39920 5.49105 5.57267 5.58773 5.61531 5.81874 6.23586 6.32047 6.62795 6.93003 7.38623 8.14172 8.37894 9.34276 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.003071 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.461838 B = 9113.880812 C =10243.740633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.053 0.947 4 C 0.127 3.873 5 N -0.597 5.597 6 C 0.591 3.409 7 O -0.571 6.571 8 C -0.264 4.264 9 C -0.037 4.037 10 C -0.002 4.002 11 N -0.548 5.548 12 H 0.434 0.566 13 C 0.085 3.915 14 C -0.198 4.198 15 C -0.211 4.211 16 S 0.191 5.809 17 C 0.100 3.900 18 C -0.138 4.138 19 C 0.180 3.820 20 H 0.052 0.948 21 N -0.731 5.731 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.225 0.775 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.370 0.630 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.972 -4.643 16.123 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.071 0.929 4 C 0.005 3.995 5 N -0.327 5.327 6 C 0.380 3.620 7 O -0.452 6.452 8 C -0.384 4.384 9 C -0.072 4.072 10 C -0.115 4.115 11 N -0.150 5.150 12 H 0.274 0.726 13 C -0.050 4.050 14 C -0.227 4.227 15 C -0.333 4.333 16 S 0.455 5.545 17 C -0.024 4.024 18 C -0.179 4.179 19 C 0.071 3.929 20 H 0.070 0.930 21 N -0.369 5.369 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.798 3.202 27 H -0.217 1.217 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.163 0.837 36 H 0.242 0.758 37 H 0.182 0.818 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.202 0.798 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.297 -5.867 16.065 25.785 hybrid contribution -0.145 2.159 -0.591 2.243 sum 19.152 -3.708 15.474 24.900 Atomic orbital electron populations 1.21570 0.93616 1.02201 1.01302 1.21691 0.96881 0.99026 0.94381 0.92886 1.21803 0.77853 1.01823 0.98066 1.48084 1.07296 1.59551 1.17798 1.17183 0.85210 0.76934 0.82711 1.90784 1.75192 1.49017 1.30221 1.23479 0.96382 1.01934 1.16577 1.19232 0.89047 0.99731 0.99238 1.17935 0.87810 0.94143 1.11658 1.42044 1.02681 1.16406 1.53834 0.72585 1.22667 0.95664 0.88580 0.98045 1.20550 0.88773 1.01391 1.11979 1.23779 1.00262 0.98603 1.10639 1.83710 0.92139 1.13684 1.64974 1.22314 0.99360 0.97892 0.82841 1.22445 0.98616 0.99797 0.97024 1.20424 0.91334 0.95559 0.85558 0.92983 1.42581 1.76762 1.10859 1.06739 1.19610 1.33626 0.94435 0.88460 0.90348 1.25487 1.03222 0.96896 1.01284 1.69822 1.52102 1.11112 1.29238 0.85216 0.77851 0.77505 0.79676 1.21734 1.22780 1.19226 0.92086 0.91602 0.93986 0.89205 0.89344 0.83737 0.75838 0.81839 0.88253 0.88964 0.93905 0.91190 0.79782 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.03 71.98 0.65 -3.53 16 2 C -0.10 -3.32 2.47 -10.57 -0.03 -3.35 16 3 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.13 3.67 5.74 86.51 0.50 4.16 16 5 N -0.60 -17.60 2.97 -823.04 -2.44 -20.05 16 6 C 0.59 18.81 7.50 86.37 0.65 19.46 16 7 O -0.57 -21.34 16.51 -4.46 -0.07 -21.42 16 8 C -0.26 -7.26 5.41 23.83 0.13 -7.14 16 9 C -0.04 -0.91 10.10 21.85 0.22 -0.69 16 10 C 0.00 -0.05 7.67 38.03 0.29 0.24 16 11 N -0.55 -6.97 6.21 -188.39 -1.17 -8.14 16 12 H 0.43 2.80 8.96 -92.70 -0.83 1.97 16 13 C 0.09 0.81 11.85 83.16 0.99 1.79 16 14 C -0.20 -2.97 10.84 22.25 0.24 -2.73 16 15 C -0.21 -4.52 7.31 23.11 0.17 -4.35 16 16 S 0.19 4.34 20.06 -56.49 -1.13 3.21 16 17 C 0.10 2.72 5.86 86.36 0.51 3.22 16 18 C -0.14 -4.71 5.66 30.67 0.17 -4.54 16 19 C 0.18 6.80 2.19 45.02 0.10 6.90 16 20 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 21 N -0.73 -35.64 4.41 -322.81 -1.42 -37.07 16 22 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 23 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 25 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 26 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 27 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.64 7.36 -2.39 -0.02 1.62 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.09 2.64 7.02 -2.39 -0.02 2.63 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 37 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.10 2.54 4.02 -16.24 -0.07 2.47 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.37 19.91 7.50 -92.71 -0.70 19.22 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -72.92 361.39 1.43 -71.49 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.52 Total: 29.12 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.88 Total: -5.89 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -4.75 Total: -124.15 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.13 Total: 3.21 kcal Total: -72.92 1.43 -71.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.072 kcal (2) G-P(sol) polarization free energy of solvation -72.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds