Wall clock time and date at job start Tue Mar 31 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.52132 * 2 1 4 4 C 1.53187 * 109.50137 * 120.08163 * 2 1 3 5 5 N 1.46920 * 108.77826 * 174.58775 * 4 2 1 6 6 C 1.34776 * 120.63258 * 126.41336 * 5 4 2 7 7 O 1.21733 * 119.99986 * 353.65139 * 6 5 4 8 8 C 1.46416 * 120.00263 * 173.65780 * 6 5 4 9 9 C 1.35772 * 124.96203 * 148.46223 * 8 6 5 10 10 C 1.38878 * 115.18724 * 179.97438 * 9 8 6 11 11 N 1.39738 * 139.91650 * 179.97438 * 10 9 8 12 12 H 0.97001 * 125.63349 * 0.02801 * 11 10 9 13 13 C 1.36214 * 108.73442 * 180.02562 * 11 10 9 14 14 C 1.34512 * 109.29652 * 0.02562 * 13 11 10 15 15 C 1.38240 * 113.39048 * 0.02562 * 10 9 8 16 16 S 1.75626 * 124.95576 * 328.15926 * 8 6 5 17 17 C 1.46924 * 118.73968 * 306.39262 * 5 4 2 18 18 C 1.53200 * 108.77495 * 53.60446 * 17 5 4 19 19 C 1.53039 * 109.31360 * 305.36574 * 18 17 5 20 20 H 1.08992 * 109.46353 * 181.38457 * 19 18 17 21 21 N 1.46499 * 109.46354 * 301.34912 * 19 18 17 22 22 C 1.36940 * 119.99570 * 274.99822 * 21 19 18 23 23 H 1.08003 * 120.00060 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00054 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99483 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00207 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47474 * 89.99741 * 26 24 22 28 28 H 1.48501 * 109.47356 * 210.00333 * 26 24 22 29 29 H 1.48510 * 109.47040 * 329.99924 * 26 24 22 30 30 H 1.09007 * 109.46759 * 180.08350 * 1 2 3 31 31 H 1.08996 * 109.46833 * 300.07508 * 1 2 3 32 32 H 1.08993 * 109.47276 * 60.08073 * 1 2 3 33 33 H 1.09005 * 109.58483 * 54.79689 * 4 2 1 34 34 H 1.09006 * 109.70313 * 294.44215 * 4 2 1 35 35 H 1.08003 * 122.40790 * 0.02562 * 9 8 6 36 36 H 1.07999 * 125.34830 * 180.02562 * 13 11 10 37 37 H 1.07999 * 126.07416 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.58401 * 293.82299 * 17 5 4 39 39 H 1.09000 * 109.59046 * 173.39583 * 17 5 4 40 40 H 1.08997 * 109.49408 * 185.41801 * 18 17 5 41 41 H 1.08998 * 109.51909 * 65.33535 * 18 17 5 42 42 H 0.96997 * 120.00419 * 94.99586 * 21 19 18 43 43 H 0.97007 * 119.99538 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0415 -0.7238 1.2495 5 7 3.5047 -0.8290 1.1695 6 6 4.2812 -0.3863 2.1782 7 8 3.7815 0.2099 3.1145 8 6 5.7259 -0.6224 2.1478 9 6 6.6607 0.2045 2.6824 10 6 7.9757 -0.2182 2.5378 11 7 9.2720 0.1910 2.8617 12 1 9.5059 1.0032 3.3376 13 6 10.1529 -0.7392 2.3988 14 6 9.4752 -1.7290 1.7902 15 6 8.0950 -1.4205 1.8660 16 16 6.5021 -2.0202 1.4212 17 6 4.1054 -1.4265 -0.0309 18 6 3.5708 -0.6949 -1.2661 19 6 2.0408 -0.7230 -1.2485 20 1 1.6581 -0.2245 -2.1389 21 7 1.5784 -2.1130 -1.2308 22 6 1.4468 -2.8057 -2.4047 23 1 1.6836 -2.3272 -3.3436 24 6 1.0092 -4.1230 -2.3881 25 7 0.7201 -4.7059 -1.2440 26 14 0.8304 -5.0681 -3.9893 27 1 2.1079 -5.7574 -4.3026 28 1 -0.2539 -6.0735 -3.8524 29 1 0.4950 -4.1248 -5.0862 30 1 -0.3633 -1.0278 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5125 -0.8906 33 1 1.6054 -1.7216 1.2979 34 1 1.7639 -0.1600 2.1402 35 1 6.4004 1.1245 3.1847 36 1 11.2266 -0.6897 2.5039 37 1 9.9069 -2.6034 1.3261 38 1 3.8376 -2.4817 -0.0868 39 1 5.1897 -1.3244 0.0136 40 1 3.9334 -1.1896 -2.1672 41 1 3.9159 0.3390 -1.2547 42 1 1.3654 -2.5427 -0.3877 43 1 0.4139 -5.6263 -1.2324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036283124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:51 Heat of formation + Delta-G solvation = 55.284155 kcal Electronic energy + Delta-G solvation = -26489.836368 eV Core-core repulsion = 22855.844284 eV Total energy + Delta-G solvation = -3633.992084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27933 -39.98014 -37.72398 -35.09128 -34.27189 -32.82616 -31.39753 -31.04139 -29.17775 -28.60899 -26.26747 -25.13131 -23.58994 -23.29069 -21.68799 -21.56817 -20.80005 -19.13008 -18.60520 -17.98186 -17.35094 -16.73152 -15.78936 -15.49967 -15.23037 -14.80804 -14.48692 -14.42377 -14.11775 -14.00226 -13.69315 -13.50564 -13.27293 -13.03585 -12.71787 -12.50218 -12.27956 -11.99513 -11.84009 -11.42374 -11.25362 -11.17538 -10.92817 -10.84884 -10.76052 -10.47264 -10.37014 -10.17371 -9.82146 -9.76249 -9.71648 -9.53079 -8.91818 -8.31079 -8.08771 -7.63268 -6.95915 -5.77387 -3.05772 0.56786 1.41952 1.98351 2.35153 2.54815 2.79475 3.22355 3.38695 3.43038 3.48953 3.50202 4.58822 4.59129 4.74399 4.86453 5.09734 5.24586 5.33772 5.34669 5.38824 5.56846 5.61164 5.65540 5.74459 5.81297 5.86206 5.88998 5.98074 6.08164 6.10926 6.25825 6.35078 6.38089 6.42577 6.52191 6.60726 6.64952 6.71006 6.78469 6.95002 7.01569 7.23789 7.66515 7.70490 8.31277 8.41075 9.52754 10.09266 10.44545 11.45003 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003517 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.860922 B = 7959.201114 C = 9264.359468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.588 3.412 7 O -0.543 6.543 8 C -0.230 4.230 9 C -0.044 4.044 10 C 0.025 3.975 11 N -0.560 5.560 12 H 0.417 0.583 13 C 0.051 3.949 14 C -0.170 4.170 15 C -0.208 4.208 16 S 0.202 5.798 17 C 0.098 3.902 18 C -0.146 4.146 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.719 5.719 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.144 0.856 36 H 0.176 0.824 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.639 10.208 7.097 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.375 3.625 7 O -0.423 6.423 8 C -0.350 4.350 9 C -0.080 4.080 10 C -0.089 4.089 11 N -0.161 5.161 12 H 0.255 0.745 13 C -0.082 4.082 14 C -0.200 4.200 15 C -0.329 4.329 16 S 0.467 5.533 17 C -0.025 4.025 18 C -0.187 4.187 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.162 0.838 36 H 0.193 0.807 37 H 0.164 0.836 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.814 9.271 6.733 19.528 hybrid contribution 0.691 0.805 0.239 1.088 sum 16.505 10.075 6.971 20.556 Atomic orbital electron populations 1.21665 0.94147 1.03211 1.00453 1.21707 0.96533 0.98913 0.95667 0.91538 1.21704 0.77813 1.01770 0.98867 1.47970 1.07264 1.59526 1.17657 1.16890 0.84089 0.78948 0.82557 1.90794 1.74174 1.42234 1.35089 1.23784 0.97301 1.02395 1.11512 1.19104 0.87676 1.00890 1.00292 1.17982 0.86364 0.97019 1.07498 1.41878 1.03593 1.21591 1.49078 0.74532 1.21827 0.95465 0.90230 1.00662 1.20139 0.89366 1.01855 1.08605 1.23660 0.99867 1.00595 1.08806 1.84451 0.91648 1.21294 1.55878 1.22185 0.97083 0.99330 0.83928 1.22497 1.00385 0.98657 0.97179 1.20225 0.90724 0.87388 0.94871 0.93007 1.42480 1.78971 1.07706 1.06952 1.19217 1.37191 0.93865 0.86555 0.91243 1.24697 1.02289 0.97178 0.96567 1.69650 1.51708 1.13020 1.23634 0.86245 0.77276 0.79831 0.83135 1.21803 1.21932 1.20881 0.91002 0.93752 0.92783 0.90365 0.89594 0.83843 0.80720 0.83643 0.89249 0.90167 0.90517 0.93229 0.78096 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.05 37.16 0.34 -1.87 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.08 5.43 -3.72 -0.02 2.06 16 5 N -0.59 -10.18 2.97 -174.40 -0.52 -10.69 16 6 C 0.59 10.28 7.56 -12.97 -0.10 10.18 16 7 O -0.54 -10.73 16.39 5.16 0.08 -10.65 16 8 C -0.23 -3.49 5.64 -37.17 -0.21 -3.70 16 9 C -0.04 -0.58 10.00 -40.23 -0.40 -0.99 16 10 C 0.02 0.30 7.67 -84.02 -0.64 -0.34 16 11 N -0.56 -4.71 6.21 -10.90 -0.07 -4.78 16 12 H 0.42 2.14 8.96 -40.82 -0.37 1.78 16 13 C 0.05 0.39 11.85 -16.92 -0.20 0.19 16 14 C -0.17 -1.72 10.85 -39.61 -0.43 -2.15 16 15 C -0.21 -2.66 7.31 -38.29 -0.28 -2.94 16 16 S 0.20 2.81 19.53 -107.50 -2.10 0.71 16 17 C 0.10 1.66 5.23 -3.71 -0.02 1.64 16 18 C -0.15 -2.48 5.78 -26.61 -0.15 -2.63 16 19 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.46 3.64 -53.38 -0.19 -16.66 16 22 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 26 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.07 1.33 7.54 -51.92 -0.39 0.94 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.47 6.64 -51.93 -0.34 1.13 16 34 H 0.09 1.48 7.00 -51.93 -0.36 1.11 16 35 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.09 1.72 7.74 -51.93 -0.40 1.32 16 39 H 0.08 1.23 4.04 -26.71 -0.11 1.12 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.38 9.42 5.92 -40.82 -0.24 9.18 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -31.68 356.61 -10.06 -41.75 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.56 Total: 10.57 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.78 Total: -6.11 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.06 Total: -58.34 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.10 Total: 0.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.68 -10.06 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.032 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds