Wall clock time and date at job start Tue Mar 31 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.52132 * 2 1 4 4 C 1.53187 * 109.50137 * 120.08163 * 2 1 3 5 5 N 1.46920 * 108.77826 * 174.58775 * 4 2 1 6 6 C 1.34776 * 120.63258 * 126.41336 * 5 4 2 7 7 O 1.21733 * 119.99986 * 353.65139 * 6 5 4 8 8 C 1.46416 * 120.00263 * 173.65780 * 6 5 4 9 9 C 1.35772 * 124.96203 * 148.46223 * 8 6 5 10 10 C 1.38878 * 115.18724 * 179.97438 * 9 8 6 11 11 N 1.39738 * 139.91650 * 179.97438 * 10 9 8 12 12 H 0.97001 * 125.63349 * 0.02801 * 11 10 9 13 13 C 1.36214 * 108.73442 * 180.02562 * 11 10 9 14 14 C 1.34512 * 109.29652 * 0.02562 * 13 11 10 15 15 C 1.38240 * 113.39048 * 0.02562 * 10 9 8 16 16 S 1.75626 * 124.95576 * 328.15926 * 8 6 5 17 17 C 1.46924 * 118.73968 * 306.39262 * 5 4 2 18 18 C 1.53200 * 108.77495 * 53.60446 * 17 5 4 19 19 C 1.53039 * 109.31360 * 305.36574 * 18 17 5 20 20 H 1.08992 * 109.46353 * 181.38457 * 19 18 17 21 21 N 1.46499 * 109.46354 * 301.34912 * 19 18 17 22 22 C 1.36940 * 119.99570 * 274.99822 * 21 19 18 23 23 H 1.08003 * 120.00060 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00054 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99483 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00207 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47474 * 89.99741 * 26 24 22 28 28 H 1.48501 * 109.47356 * 210.00333 * 26 24 22 29 29 H 1.48510 * 109.47040 * 329.99924 * 26 24 22 30 30 H 1.09007 * 109.46759 * 180.08350 * 1 2 3 31 31 H 1.08996 * 109.46833 * 300.07508 * 1 2 3 32 32 H 1.08993 * 109.47276 * 60.08073 * 1 2 3 33 33 H 1.09005 * 109.58483 * 54.79689 * 4 2 1 34 34 H 1.09006 * 109.70313 * 294.44215 * 4 2 1 35 35 H 1.08003 * 122.40790 * 0.02562 * 9 8 6 36 36 H 1.07999 * 125.34830 * 180.02562 * 13 11 10 37 37 H 1.07999 * 126.07416 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.58401 * 293.82299 * 17 5 4 39 39 H 1.09000 * 109.59046 * 173.39583 * 17 5 4 40 40 H 1.08997 * 109.49408 * 185.41801 * 18 17 5 41 41 H 1.08998 * 109.51909 * 65.33535 * 18 17 5 42 42 H 0.96997 * 120.00419 * 94.99586 * 21 19 18 43 43 H 0.97007 * 119.99538 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0415 -0.7238 1.2495 5 7 3.5047 -0.8290 1.1695 6 6 4.2812 -0.3863 2.1782 7 8 3.7815 0.2099 3.1145 8 6 5.7259 -0.6224 2.1478 9 6 6.6607 0.2045 2.6824 10 6 7.9757 -0.2182 2.5378 11 7 9.2720 0.1910 2.8617 12 1 9.5059 1.0032 3.3376 13 6 10.1529 -0.7392 2.3988 14 6 9.4752 -1.7290 1.7902 15 6 8.0950 -1.4205 1.8660 16 16 6.5021 -2.0202 1.4212 17 6 4.1054 -1.4265 -0.0309 18 6 3.5708 -0.6949 -1.2661 19 6 2.0408 -0.7230 -1.2485 20 1 1.6581 -0.2245 -2.1389 21 7 1.5784 -2.1130 -1.2308 22 6 1.4468 -2.8057 -2.4047 23 1 1.6836 -2.3272 -3.3436 24 6 1.0092 -4.1230 -2.3881 25 7 0.7201 -4.7059 -1.2440 26 14 0.8304 -5.0681 -3.9893 27 1 2.1079 -5.7574 -4.3026 28 1 -0.2539 -6.0735 -3.8524 29 1 0.4950 -4.1248 -5.0862 30 1 -0.3633 -1.0278 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5125 -0.8906 33 1 1.6054 -1.7216 1.2979 34 1 1.7639 -0.1600 2.1402 35 1 6.4004 1.1245 3.1847 36 1 11.2266 -0.6897 2.5039 37 1 9.9069 -2.6034 1.3261 38 1 3.8376 -2.4817 -0.0868 39 1 5.1897 -1.3244 0.0136 40 1 3.9334 -1.1896 -2.1672 41 1 3.9159 0.3390 -1.2547 42 1 1.3654 -2.5427 -0.3877 43 1 0.4139 -5.6263 -1.2324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036283124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:50 Heat of formation + Delta-G solvation = 35.933365 kcal Electronic energy + Delta-G solvation = -26490.675481 eV Core-core repulsion = 22855.844284 eV Total energy + Delta-G solvation = -3634.831197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10208 -41.35236 -39.17245 -36.09417 -35.89878 -34.47168 -33.01153 -31.82464 -30.94334 -29.65549 -27.54663 -26.61312 -25.36474 -24.46028 -23.10991 -22.53661 -21.62626 -20.44275 -19.59620 -19.38326 -19.17969 -17.92615 -17.11630 -16.70440 -16.47258 -16.27988 -15.94159 -15.67336 -15.45113 -15.23022 -14.93217 -14.87905 -14.45034 -14.31021 -14.20208 -13.76078 -13.49255 -13.18763 -12.98091 -12.94097 -12.84399 -12.70010 -12.47742 -12.34320 -12.13138 -12.08720 -11.93400 -11.65723 -11.56720 -11.18301 -11.11436 -10.83927 -10.59765 -9.70170 -9.07645 -8.89408 -8.57645 -7.85757 -5.12149 -0.44954 0.39572 0.99558 1.41730 1.51965 1.52125 1.60013 1.74344 1.78307 2.07656 2.25956 2.62276 3.43294 3.48204 3.84718 3.88107 3.97680 4.02789 4.09275 4.17925 4.23649 4.31204 4.38008 4.50566 4.56806 4.61499 4.69189 4.74774 4.84386 4.95282 5.00734 5.03124 5.07671 5.13975 5.21496 5.27256 5.29735 5.48021 5.57739 5.60211 5.63758 5.81545 6.30730 6.35764 6.64766 6.95746 7.43397 8.18837 8.43034 9.37508 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.003517 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.860922 B = 7959.201114 C = 9264.359468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.589 3.411 7 O -0.573 6.573 8 C -0.268 4.268 9 C -0.021 4.021 10 C -0.002 4.002 11 N -0.544 5.544 12 H 0.435 0.565 13 C 0.092 3.908 14 C -0.203 4.203 15 C -0.211 4.211 16 S 0.171 5.829 17 C 0.108 3.892 18 C -0.139 4.139 19 C 0.174 3.826 20 H 0.052 0.948 21 N -0.724 5.724 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.963 3.037 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.271 1.271 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.228 0.772 37 H 0.160 0.840 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.373 0.627 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.853 12.171 6.931 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.104 0.896 4 C 0.002 3.998 5 N -0.325 5.325 6 C 0.378 3.622 7 O -0.456 6.456 8 C -0.387 4.387 9 C -0.058 4.058 10 C -0.115 4.115 11 N -0.147 5.147 12 H 0.276 0.724 13 C -0.044 4.044 14 C -0.232 4.232 15 C -0.333 4.333 16 S 0.435 5.565 17 C -0.016 4.016 18 C -0.180 4.180 19 C 0.065 3.935 20 H 0.070 0.930 21 N -0.365 5.365 22 C -0.358 4.358 23 H 0.094 0.906 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.794 3.206 27 H -0.218 1.218 28 H -0.230 1.230 29 H -0.196 1.196 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.244 0.756 37 H 0.178 0.822 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.207 0.793 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.040 11.307 6.551 23.093 hybrid contribution -0.055 0.293 0.369 0.475 sum 18.984 11.601 6.920 23.300 Atomic orbital electron populations 1.21595 0.93698 1.01616 1.01911 1.21632 0.96826 0.99299 0.94024 0.89571 1.21594 0.78242 1.00578 0.99401 1.47978 1.07107 1.59517 1.17862 1.17180 0.85082 0.78111 0.81781 1.90756 1.75071 1.43824 1.35920 1.23472 0.96201 1.04034 1.15024 1.19269 0.88182 1.00311 0.97994 1.17924 0.87246 0.97389 1.08965 1.42002 1.02216 1.22307 1.48151 0.72380 1.22665 0.97294 0.87873 0.96525 1.20559 0.88256 1.03805 1.10533 1.23931 1.00152 1.00721 1.08488 1.84398 0.93445 1.21637 1.56984 1.22063 0.98289 0.97415 0.83836 1.22393 0.98733 0.99998 0.96879 1.20432 0.91846 0.85319 0.95931 0.93004 1.42590 1.79048 1.09237 1.05670 1.19572 1.34735 0.93881 0.87650 0.90612 1.25383 1.03582 0.98405 0.99099 1.69809 1.53860 1.12815 1.25490 0.85283 0.76611 0.78436 0.80280 1.21784 1.23000 1.19637 0.94034 0.91601 0.92007 0.92698 0.89413 0.82985 0.75573 0.82216 0.92375 0.88323 0.91103 0.90840 0.79303 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.05 71.98 0.65 -3.51 16 2 C -0.10 -3.22 2.67 -10.71 -0.03 -3.25 16 3 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.12 4.42 5.43 86.36 0.47 4.89 16 5 N -0.59 -20.92 2.97 -823.89 -2.45 -23.37 16 6 C 0.59 21.04 7.56 86.37 0.65 21.69 16 7 O -0.57 -23.09 16.39 -4.45 -0.07 -23.16 16 8 C -0.27 -8.20 5.64 23.83 0.13 -8.07 16 9 C -0.02 -0.55 10.00 21.85 0.22 -0.33 16 10 C 0.00 -0.05 7.67 38.03 0.29 0.24 16 11 N -0.54 -6.92 6.21 -188.38 -1.17 -8.09 16 12 H 0.44 2.51 8.96 -92.71 -0.83 1.68 16 13 C 0.09 0.92 11.85 83.16 0.99 1.90 16 14 C -0.20 -3.44 10.85 22.25 0.24 -3.20 16 15 C -0.21 -5.06 7.31 23.11 0.17 -4.89 16 16 S 0.17 4.83 19.53 -56.49 -1.10 3.73 16 17 C 0.11 3.71 5.23 86.37 0.45 4.17 16 18 C -0.14 -4.67 5.78 30.67 0.18 -4.49 16 19 C 0.17 6.48 2.53 45.02 0.11 6.59 16 20 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 21 N -0.72 -34.04 3.64 -322.81 -1.18 -35.22 16 22 C -0.23 -11.88 9.93 84.03 0.83 -11.05 16 23 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 25 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 26 Si 0.96 45.43 29.55 68.60 2.03 47.46 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 30 H 0.04 1.58 7.54 -2.38 -0.02 1.56 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 2.21 6.64 -2.38 -0.02 2.19 16 34 H 0.09 3.09 7.00 -2.38 -0.02 3.07 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.23 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.06 2.37 7.74 -2.39 -0.02 2.35 16 39 H 0.10 3.08 4.04 -18.42 -0.07 3.01 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 42 H 0.37 19.22 5.92 -92.71 -0.55 18.67 16 43 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -70.94 356.61 1.79 -69.16 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.38 Total: 30.14 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 5.83 Total: -2.88 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -4.51 Total: -124.43 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.16 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.10 Total: 3.73 kcal Total: -70.94 1.79 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036283124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.090 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds