Wall clock time and date at job start Tue Mar 31 2020 18:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.58267 * 2 1 4 4 C 1.53188 * 109.58879 * 120.28670 * 2 1 3 5 5 C 1.53043 * 109.31294 * 174.56748 * 4 2 1 6 6 H 1.09001 * 109.45992 * 178.62865 * 5 4 2 7 7 N 1.46496 * 109.45988 * 58.65605 * 5 4 2 8 8 C 1.36940 * 119.99979 * 154.97609 * 7 5 4 9 9 H 1.08000 * 120.00106 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00121 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99949 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99879 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46841 * 90.00069 * 12 10 8 14 14 H 1.48496 * 109.47082 * 330.00023 * 12 10 8 15 15 H 1.48496 * 109.46850 * 210.00097 * 12 10 8 16 16 C 1.53037 * 109.52551 * 298.63961 * 5 4 2 17 17 C 1.53167 * 109.32690 * 61.37508 * 16 5 4 18 18 N 1.46928 * 108.76953 * 305.35265 * 17 16 5 19 19 C 1.34779 * 120.63432 * 233.63509 * 18 17 16 20 20 O 1.21720 * 119.99968 * 187.03909 * 19 18 17 21 21 C 1.46495 * 119.99694 * 7.03861 * 19 18 17 22 22 C 1.36111 * 125.70805 * 206.50085 * 21 19 18 23 23 C 1.42231 * 107.62587 * 180.02562 * 22 21 19 24 24 C 1.45586 * 140.77913 * 179.97438 * 23 22 21 25 25 C 1.31811 * 114.63264 * 179.97438 * 24 23 22 26 26 S 1.75352 * 111.24408 * 0.02562 * 25 24 23 27 27 C 1.38175 * 106.98935 * 359.97438 * 23 22 21 28 28 N 1.37457 * 108.17007 * 359.74033 * 27 23 22 29 29 H 0.97002 * 125.67731 * 180.29523 * 28 27 23 30 30 H 1.09004 * 109.47151 * 292.33858 * 1 2 3 31 31 H 1.08997 * 109.47046 * 52.34416 * 1 2 3 32 32 H 1.09000 * 109.46976 * 172.33969 * 1 2 3 33 33 H 1.09004 * 109.49814 * 54.61551 * 4 2 1 34 34 H 1.09000 * 109.50151 * 294.51846 * 4 2 1 35 35 H 0.97002 * 120.00348 * 334.97327 * 7 5 4 36 36 H 0.96998 * 119.99742 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.50279 * 181.31031 * 16 5 4 38 38 H 1.09001 * 109.50015 * 301.41229 * 16 5 4 39 39 H 1.09003 * 109.58990 * 185.57021 * 17 16 5 40 40 H 1.08994 * 109.70886 * 65.20606 * 17 16 5 41 41 H 1.08005 * 126.18648 * 0.02562 * 22 21 19 42 42 H 1.08001 * 122.68702 * 359.97438 * 24 23 22 43 43 H 1.08003 * 124.38128 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5679 -0.8433 1.1728 6 1 3.9381 -1.3393 2.0700 7 7 4.1547 0.4956 1.0778 8 6 5.4380 0.7125 1.5038 9 1 6.0173 -0.1034 1.9101 10 6 5.9943 1.9810 1.4133 11 7 7.2275 2.1896 1.8232 12 14 4.9925 3.3922 0.7099 13 1 4.2504 4.0665 1.8052 14 1 4.0291 2.8652 -0.2896 15 1 5.9019 4.3665 0.0551 16 6 3.9601 -1.6606 -0.0602 17 6 3.4686 -0.9434 -1.3211 18 7 2.0254 -0.6989 -1.1937 19 6 1.1721 -1.1084 -2.1533 20 8 -0.0014 -0.7895 -2.1007 21 6 1.6571 -1.9373 -3.2595 22 6 1.1067 -2.0044 -4.5026 23 6 1.8789 -2.9226 -5.2665 24 6 1.9416 -3.5099 -6.5972 25 6 2.9310 -4.3623 -6.7755 26 16 3.8926 -4.5332 -5.3191 27 6 2.8869 -3.3857 -4.4427 28 7 2.7529 -2.7769 -3.2176 29 1 3.3304 -2.9158 -2.4507 30 1 -0.3634 0.3906 0.9506 31 1 -0.3633 0.6278 -0.8136 32 1 -0.3633 -1.0185 -0.1370 33 1 1.6050 -1.7247 1.2920 34 1 1.7639 -0.1656 2.1372 35 1 3.6344 1.2286 0.7132 36 1 7.6161 3.0761 1.7603 37 1 5.0446 -1.7623 -0.0994 38 1 3.5034 -2.6486 -0.0022 39 1 3.6576 -1.5681 -2.1941 40 1 3.9917 0.0065 -1.4313 41 1 0.2404 -1.4589 -4.8467 42 1 1.2341 -3.2665 -7.3761 43 1 3.1245 -4.8876 -7.6991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044699935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:24 Heat of formation + Delta-G solvation = 86.268877 kcal Electronic energy + Delta-G solvation = -26916.970461 eV Core-core repulsion = 23284.321975 eV Total energy + Delta-G solvation = -3632.648485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.74118 -39.98848 -37.68964 -35.68703 -34.45302 -32.78128 -32.07436 -30.75111 -29.82735 -28.58270 -27.25849 -24.68066 -23.45230 -23.21428 -23.05768 -21.49030 -20.35349 -19.58927 -19.24497 -18.06904 -17.84034 -16.64449 -16.18049 -15.43039 -15.37568 -14.92422 -14.84455 -14.54143 -14.29265 -14.06569 -13.97967 -13.55600 -13.46811 -13.21364 -12.82437 -12.65134 -12.42951 -12.24305 -12.04260 -11.85051 -11.75295 -11.42959 -11.12447 -11.03503 -11.00983 -10.88219 -10.61729 -10.37724 -10.15722 -9.68364 -9.64733 -9.26827 -9.07196 -8.52952 -8.39673 -7.84587 -7.40373 -5.87570 -3.24321 0.88332 1.14658 1.28327 1.79212 2.66719 2.83841 2.99098 3.28423 3.31785 3.34270 3.38588 4.29076 4.48862 4.59265 4.80834 4.84181 5.00864 5.06103 5.17134 5.22836 5.30722 5.40936 5.42546 5.46985 5.51646 5.57467 5.73282 5.80905 5.88824 5.92341 6.00461 6.04904 6.13339 6.21468 6.24889 6.37825 6.45850 6.49617 6.53990 6.57509 6.78226 6.95643 7.41731 7.87356 8.10496 8.31216 9.08595 9.81258 10.00160 11.30479 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003621 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.989343 B = 7731.667527 C = 8678.170912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.145 3.855 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.181 3.819 6 H 0.063 0.937 7 N -0.746 5.746 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.009 3.991 11 N -0.931 5.931 12 Si 0.880 3.120 13 H -0.283 1.283 14 H -0.279 1.279 15 H -0.290 1.290 16 C -0.155 4.155 17 C 0.093 3.907 18 N -0.597 5.597 19 C 0.585 3.415 20 O -0.523 6.523 21 C 0.001 3.999 22 C -0.078 4.078 23 C -0.162 4.162 24 C -0.070 4.070 25 C -0.224 4.224 26 S 0.132 5.868 27 C -0.016 4.016 28 N -0.524 5.524 29 H 0.427 0.573 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -13.402 -13.836 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.176 4.176 5 C 0.071 3.929 6 H 0.081 0.919 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.109 0.891 10 C -0.187 4.187 11 N -0.578 5.578 12 Si 0.710 3.290 13 H -0.209 1.209 14 H -0.205 1.205 15 H -0.216 1.216 16 C -0.196 4.196 17 C -0.030 4.030 18 N -0.330 5.330 19 C 0.372 3.628 20 O -0.400 6.400 21 C -0.112 4.112 22 C -0.106 4.106 23 C -0.174 4.174 24 C -0.101 4.101 25 C -0.358 4.358 26 S 0.385 5.615 27 C -0.244 4.244 28 N -0.134 5.134 29 H 0.273 0.727 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.883 -14.049 -13.155 21.636 hybrid contribution -1.215 1.849 -0.551 2.280 sum -11.098 -12.200 -13.706 21.445 Atomic orbital electron populations 1.22194 0.92720 1.03578 1.01022 1.21296 0.95276 0.95708 0.83450 0.90765 1.22314 0.97289 1.00808 0.97234 1.20121 0.90262 0.87154 0.95327 0.91882 1.42875 1.14480 1.05167 1.76420 1.19050 0.88273 0.95980 1.34414 0.89112 1.24655 0.96038 0.97109 1.00946 1.69690 1.13557 1.22026 1.52520 0.86647 0.79683 0.83565 0.79113 1.20917 1.20508 1.21638 1.22589 1.02195 0.97935 0.96885 1.22221 0.79539 1.02751 0.98532 1.48140 1.07493 1.57158 1.20188 1.17071 0.85554 0.79620 0.80508 1.90891 1.16455 1.57658 1.74997 1.20189 0.92264 1.01154 0.97570 1.20672 1.00169 0.99267 0.90487 1.19369 0.99402 1.04568 0.94103 1.20319 0.98630 0.96354 0.94774 1.24864 1.01556 1.07350 1.02010 1.83969 1.31224 1.43094 1.03188 1.23665 1.04309 1.05492 0.90950 1.42444 1.25097 1.35215 1.10655 0.72688 0.93407 0.90642 0.91699 0.91476 0.90198 0.80548 0.92955 0.89859 0.92995 0.90619 0.89389 0.82795 0.83859 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.62 37.16 0.28 -1.69 16 2 C 0.14 2.21 3.19 -67.60 -0.22 1.99 16 3 H 0.07 1.26 6.64 -51.93 -0.34 0.91 16 4 C -0.14 -2.01 5.07 -26.61 -0.13 -2.14 16 5 C 0.18 3.08 3.10 -67.89 -0.21 2.87 16 6 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 7 N -0.75 -15.96 4.12 -53.39 -0.22 -16.18 16 8 C -0.25 -6.48 10.41 -15.06 -0.16 -6.63 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 11 N -0.93 -28.17 13.97 55.49 0.78 -27.40 16 12 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 C -0.15 -2.27 5.68 -26.63 -0.15 -2.42 16 17 C 0.09 1.35 5.60 -3.72 -0.02 1.33 16 18 N -0.60 -8.89 2.97 -166.83 -0.50 -9.39 16 19 C 0.58 8.87 7.38 -12.93 -0.10 8.78 16 20 O -0.52 -8.80 12.58 5.17 0.07 -8.74 16 21 C 0.00 0.02 6.34 -82.47 -0.52 -0.51 16 22 C -0.08 -1.01 10.68 -38.81 -0.41 -1.43 16 23 C -0.16 -1.96 6.80 -105.46 -0.72 -2.68 16 24 C -0.07 -0.67 10.42 -38.55 -0.40 -1.07 16 25 C -0.22 -1.86 11.03 28.84 0.32 -1.54 16 26 S 0.13 1.24 23.24 -107.50 -2.50 -1.26 16 27 C -0.02 -0.19 8.41 -15.05 -0.13 -0.31 16 28 N -0.52 -6.34 4.87 -7.94 -0.04 -6.38 16 29 H 0.43 4.61 6.33 -40.82 -0.26 4.35 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.17 6.68 -51.93 -0.35 0.82 16 32 H 0.06 0.96 6.83 -51.93 -0.35 0.61 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.36 7.79 3.92 -40.82 -0.16 7.63 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.96 3.50 -51.93 -0.18 0.78 16 40 H 0.09 1.52 7.74 -51.93 -0.40 1.12 16 41 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -30.86 348.44 -9.98 -40.84 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.44 Total: 11.87 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -2.66 Total: -5.29 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.02 Total: -59.35 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.86 -9.98 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044699935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.109 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds