Wall clock time and date at job start Tue Mar 31 2020 18:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.58267 * 2 1 4 4 C 1.53188 * 109.58879 * 120.28670 * 2 1 3 5 5 C 1.53043 * 109.31294 * 174.56748 * 4 2 1 6 6 H 1.09001 * 109.45992 * 178.62865 * 5 4 2 7 7 N 1.46496 * 109.45988 * 58.65605 * 5 4 2 8 8 C 1.36940 * 119.99979 * 154.97609 * 7 5 4 9 9 H 1.08000 * 120.00106 * 359.97438 * 8 7 5 10 10 C 1.38810 * 120.00121 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99949 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99879 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46841 * 90.00069 * 12 10 8 14 14 H 1.48496 * 109.47082 * 330.00023 * 12 10 8 15 15 H 1.48496 * 109.46850 * 210.00097 * 12 10 8 16 16 C 1.53037 * 109.52551 * 298.63961 * 5 4 2 17 17 C 1.53167 * 109.32690 * 61.37508 * 16 5 4 18 18 N 1.46928 * 108.76953 * 305.35265 * 17 16 5 19 19 C 1.34779 * 120.63432 * 233.63509 * 18 17 16 20 20 O 1.21720 * 119.99968 * 187.03909 * 19 18 17 21 21 C 1.46495 * 119.99694 * 7.03861 * 19 18 17 22 22 C 1.36111 * 125.70805 * 206.50085 * 21 19 18 23 23 C 1.42231 * 107.62587 * 180.02562 * 22 21 19 24 24 C 1.45586 * 140.77913 * 179.97438 * 23 22 21 25 25 C 1.31811 * 114.63264 * 179.97438 * 24 23 22 26 26 S 1.75352 * 111.24408 * 0.02562 * 25 24 23 27 27 C 1.38175 * 106.98935 * 359.97438 * 23 22 21 28 28 N 1.37457 * 108.17007 * 359.74033 * 27 23 22 29 29 H 0.97002 * 125.67731 * 180.29523 * 28 27 23 30 30 H 1.09004 * 109.47151 * 292.33858 * 1 2 3 31 31 H 1.08997 * 109.47046 * 52.34416 * 1 2 3 32 32 H 1.09000 * 109.46976 * 172.33969 * 1 2 3 33 33 H 1.09004 * 109.49814 * 54.61551 * 4 2 1 34 34 H 1.09000 * 109.50151 * 294.51846 * 4 2 1 35 35 H 0.97002 * 120.00348 * 334.97327 * 7 5 4 36 36 H 0.96998 * 119.99742 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.50279 * 181.31031 * 16 5 4 38 38 H 1.09001 * 109.50015 * 301.41229 * 16 5 4 39 39 H 1.09003 * 109.58990 * 185.57021 * 17 16 5 40 40 H 1.08994 * 109.70886 * 65.20606 * 17 16 5 41 41 H 1.08005 * 126.18648 * 0.02562 * 22 21 19 42 42 H 1.08001 * 122.68702 * 359.97438 * 24 23 22 43 43 H 1.08003 * 124.38128 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 3.5679 -0.8433 1.1728 6 1 3.9381 -1.3393 2.0700 7 7 4.1547 0.4956 1.0778 8 6 5.4380 0.7125 1.5038 9 1 6.0173 -0.1034 1.9101 10 6 5.9943 1.9810 1.4133 11 7 7.2275 2.1896 1.8232 12 14 4.9925 3.3922 0.7099 13 1 4.2504 4.0665 1.8052 14 1 4.0291 2.8652 -0.2896 15 1 5.9019 4.3665 0.0551 16 6 3.9601 -1.6606 -0.0602 17 6 3.4686 -0.9434 -1.3211 18 7 2.0254 -0.6989 -1.1937 19 6 1.1721 -1.1084 -2.1533 20 8 -0.0014 -0.7895 -2.1007 21 6 1.6571 -1.9373 -3.2595 22 6 1.1067 -2.0044 -4.5026 23 6 1.8789 -2.9226 -5.2665 24 6 1.9416 -3.5099 -6.5972 25 6 2.9310 -4.3623 -6.7755 26 16 3.8926 -4.5332 -5.3191 27 6 2.8869 -3.3857 -4.4427 28 7 2.7529 -2.7769 -3.2176 29 1 3.3304 -2.9158 -2.4507 30 1 -0.3634 0.3906 0.9506 31 1 -0.3633 0.6278 -0.8136 32 1 -0.3633 -1.0185 -0.1370 33 1 1.6050 -1.7247 1.2920 34 1 1.7639 -0.1656 2.1372 35 1 3.6344 1.2286 0.7132 36 1 7.6161 3.0761 1.7603 37 1 5.0446 -1.7623 -0.0994 38 1 3.5034 -2.6486 -0.0022 39 1 3.6576 -1.5681 -2.1941 40 1 3.9917 0.0065 -1.4313 41 1 0.2404 -1.4589 -4.8467 42 1 1.2341 -3.2665 -7.3761 43 1 3.1245 -4.8876 -7.6991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044699935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:23 Heat of formation + Delta-G solvation = 68.044983 kcal Electronic energy + Delta-G solvation = -26917.760708 eV Core-core repulsion = 23284.321975 eV Total energy + Delta-G solvation = -3633.438733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.73692 -41.11168 -39.00650 -36.52946 -36.00300 -34.04402 -33.78156 -31.76512 -31.45572 -29.53716 -28.46600 -25.95184 -25.18882 -24.29517 -24.00720 -22.64488 -21.36557 -20.68481 -20.24212 -19.80978 -19.20114 -17.71356 -17.36036 -16.79108 -16.40507 -16.24288 -15.89425 -15.77479 -15.41272 -15.35209 -15.19317 -14.97100 -14.64893 -14.41571 -14.32016 -13.86680 -13.71057 -13.40879 -13.13105 -13.02490 -12.82779 -12.73616 -12.66342 -12.55481 -12.15646 -12.10072 -11.97452 -11.75793 -11.73395 -11.54219 -11.00911 -10.54593 -10.45188 -9.75841 -9.31704 -9.27001 -8.65784 -8.02886 -5.34950 0.07017 0.23386 0.43694 1.08302 1.34158 1.35639 1.42323 1.69154 1.73410 2.07338 2.32014 2.45225 3.24320 3.28977 3.53714 3.68733 3.80360 3.82167 3.91454 4.02316 4.04533 4.20504 4.31659 4.39492 4.49063 4.56582 4.63686 4.74608 4.78131 4.84332 4.90942 4.99903 5.03605 5.13812 5.17871 5.20689 5.25849 5.35029 5.43756 5.58057 5.65574 5.79182 6.04943 6.20928 6.25477 6.93418 7.07527 7.83926 8.01235 9.18652 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003621 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.989343 B = 7731.667527 C = 8678.170912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.142 3.858 3 H 0.057 0.943 4 C -0.126 4.126 5 C 0.172 3.828 6 H 0.057 0.943 7 N -0.747 5.747 8 C -0.219 4.219 9 H 0.064 0.936 10 C -0.058 4.058 11 N -0.982 5.982 12 Si 0.941 3.059 13 H -0.280 1.280 14 H -0.260 1.260 15 H -0.300 1.300 16 C -0.146 4.146 17 C 0.099 3.901 18 N -0.597 5.597 19 C 0.586 3.414 20 O -0.543 6.543 21 C -0.018 4.018 22 C -0.084 4.084 23 C -0.176 4.176 24 C -0.086 4.086 25 C -0.211 4.211 26 S 0.148 5.852 27 C -0.031 4.031 28 N -0.523 5.523 29 H 0.431 0.569 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 -15.053 -15.614 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.039 3.961 3 H 0.075 0.925 4 C -0.165 4.165 5 C 0.064 3.936 6 H 0.076 0.924 7 N -0.391 5.391 8 C -0.350 4.350 9 H 0.082 0.918 10 C -0.250 4.250 11 N -0.633 5.633 12 Si 0.770 3.230 13 H -0.206 1.206 14 H -0.185 1.185 15 H -0.227 1.227 16 C -0.186 4.186 17 C -0.024 4.024 18 N -0.329 5.329 19 C 0.375 3.625 20 O -0.422 6.422 21 C -0.131 4.131 22 C -0.112 4.112 23 C -0.189 4.189 24 C -0.116 4.116 25 C -0.344 4.344 26 S 0.402 5.598 27 C -0.259 4.259 28 N -0.134 5.134 29 H 0.277 0.723 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.462 -15.749 -14.946 24.552 hybrid contribution -0.736 2.185 -0.062 2.306 sum -12.198 -13.564 -15.008 23.623 Atomic orbital electron populations 1.22048 0.91768 1.03067 1.01410 1.21304 0.95944 0.94936 0.83871 0.92543 1.22214 0.95032 1.02125 0.97084 1.20390 0.91904 0.85164 0.96158 0.92447 1.42880 1.12875 1.07224 1.76128 1.19027 0.89557 0.94778 1.31620 0.91759 1.25324 0.97075 0.99815 1.02756 1.69852 1.15664 1.22310 1.55460 0.85633 0.78334 0.80314 0.78745 1.20619 1.18503 1.22680 1.22445 1.01660 0.99048 0.95497 1.22117 0.79210 1.01650 0.99384 1.48132 1.07436 1.57124 1.20225 1.17226 0.85260 0.79419 0.80563 1.90880 1.17240 1.58523 1.75519 1.19993 0.93479 1.02196 0.97419 1.20884 1.00351 0.99367 0.90565 1.19731 0.99258 1.04492 0.95437 1.20554 0.99888 0.96872 0.94285 1.25313 1.00232 1.06364 1.02517 1.83991 1.30717 1.41854 1.03276 1.24113 1.05043 1.05990 0.90794 1.42306 1.24810 1.35191 1.11053 0.72271 0.91652 0.92065 0.92115 0.89220 0.89757 0.80423 0.93519 0.91095 0.89778 0.88626 0.92227 0.82283 0.81658 0.78080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 7.62 71.98 0.55 -2.84 16 2 C 0.14 4.11 3.19 44.97 0.14 4.26 16 3 H 0.06 1.85 6.64 -2.38 -0.02 1.83 16 4 C -0.13 -3.40 5.07 30.67 0.16 -3.25 16 5 C 0.17 5.64 3.10 45.02 0.14 5.78 16 6 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 7 N -0.75 -31.62 4.12 -322.82 -1.33 -32.95 16 8 C -0.22 -11.59 10.41 84.03 0.87 -10.71 16 9 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 10 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 11 N -0.98 -61.20 13.97 21.65 0.30 -60.90 16 12 Si 0.94 44.77 27.74 68.60 1.90 46.67 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.26 -11.36 6.52 99.48 0.65 -10.72 16 15 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 16 C -0.15 -4.06 5.68 30.66 0.17 -3.88 16 17 C 0.10 2.80 5.60 86.35 0.48 3.28 16 18 N -0.60 -17.06 2.97 -799.92 -2.38 -19.44 16 19 C 0.59 17.22 7.38 86.39 0.64 17.86 16 20 O -0.54 -17.88 12.58 -4.41 -0.06 -17.93 16 21 C -0.02 -0.47 6.34 39.81 0.25 -0.22 16 22 C -0.08 -2.08 10.68 22.77 0.24 -1.84 16 23 C -0.18 -3.96 6.80 -20.41 -0.14 -4.10 16 24 C -0.09 -1.39 10.42 23.39 0.24 -1.15 16 25 C -0.21 -2.78 11.03 67.05 0.74 -2.04 16 26 S 0.15 2.41 23.24 -56.49 -1.31 1.10 16 27 C -0.03 -0.69 8.41 83.80 0.70 0.02 16 28 N -0.52 -11.91 4.87 -179.05 -0.87 -12.78 16 29 H 0.43 8.58 6.33 -92.71 -0.59 7.99 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.06 1.84 6.68 -2.39 -0.02 1.82 16 32 H 0.06 1.69 6.83 -2.39 -0.02 1.68 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.36 15.29 3.92 -92.71 -0.36 14.93 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 2.32 3.50 -2.39 -0.01 2.31 16 40 H 0.06 2.04 7.74 -2.39 -0.02 2.02 16 41 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -67.75 348.44 1.98 -65.77 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.06 Total: 32.14 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.67 Total: -1.68 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -4.28 Total: -126.06 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.06 Total: -17.93 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.31 Total: 1.10 kcal Total: -67.75 1.98 -65.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044699935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.811 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds