Wall clock time and date at job start Tue Mar 31 2020 18:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.69798 * 2 1 4 4 C 1.53191 * 109.58547 * 239.64996 * 2 1 3 5 5 C 1.53041 * 109.31149 * 185.57384 * 4 2 1 6 6 H 1.08996 * 109.44826 * 181.37773 * 5 4 2 7 7 N 1.46502 * 109.46260 * 301.34652 * 5 4 2 8 8 C 1.36938 * 120.00001 * 205.06908 * 7 5 4 9 9 H 1.08001 * 120.00130 * 359.71892 * 8 7 5 10 10 C 1.38813 * 119.99789 * 179.72045 * 8 7 5 11 11 N 1.31620 * 120.00171 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99858 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47161 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47172 * 120.00290 * 12 10 8 15 15 H 1.48505 * 109.47007 * 240.00259 * 12 10 8 16 16 C 1.53044 * 109.53595 * 61.36283 * 5 4 2 17 17 C 1.53193 * 109.31422 * 298.63559 * 16 5 4 18 18 N 1.46918 * 108.77479 * 54.63666 * 17 16 5 19 19 C 1.34779 * 120.63349 * 126.41455 * 18 17 16 20 20 O 1.21717 * 120.00146 * 180.33032 * 19 18 17 21 21 C 1.46491 * 119.99599 * 0.32745 * 19 18 17 22 22 C 1.36117 * 125.71015 * 205.79666 * 21 19 18 23 23 C 1.42225 * 107.62510 * 179.97438 * 22 21 19 24 24 C 1.45595 * 140.77541 * 180.02562 * 23 22 21 25 25 C 1.31809 * 114.63079 * 180.02562 * 24 23 22 26 26 S 1.75356 * 111.24579 * 359.96258 * 25 24 23 27 27 C 1.38166 * 106.99741 * 359.97438 * 23 22 21 28 28 N 1.37467 * 108.16789 * 359.75687 * 27 23 22 29 29 H 0.96999 * 125.68520 * 180.27057 * 28 27 23 30 30 H 1.09001 * 109.47267 * 305.65519 * 1 2 3 31 31 H 1.08996 * 109.47534 * 65.65641 * 1 2 3 32 32 H 1.09004 * 109.47124 * 185.65122 * 1 2 3 33 33 H 1.09000 * 109.49735 * 65.62833 * 4 2 1 34 34 H 1.08991 * 109.49793 * 305.52407 * 4 2 1 35 35 H 0.97007 * 119.99543 * 24.78531 * 7 5 4 36 36 H 0.97003 * 120.00205 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49599 * 58.59040 * 16 5 4 38 38 H 1.09000 * 109.49478 * 178.67752 * 16 5 4 39 39 H 1.09002 * 109.58601 * 174.41982 * 17 16 5 40 40 H 1.09004 * 109.58622 * 294.70358 * 17 16 5 41 41 H 1.07998 * 126.18187 * 359.97438 * 22 21 19 42 42 H 1.08002 * 122.68833 * 359.93916 * 24 23 22 43 43 H 1.08001 * 124.38250 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1703 6 1 3.9375 -1.3447 -2.0670 7 7 4.1570 0.4900 -1.0750 8 6 5.4409 0.7043 -1.5003 9 1 6.0204 -0.1138 -1.9019 10 6 5.9974 1.9732 -1.4154 11 7 5.2913 2.9701 -0.9255 12 14 7.7490 2.2654 -1.9949 13 1 8.3231 0.9915 -2.4976 14 1 7.7478 3.2730 -3.0858 15 1 8.5688 2.7639 -0.8614 16 6 3.9569 -1.6656 0.0634 17 6 3.4650 -0.9469 1.3237 18 7 2.0226 -0.6996 1.1944 19 6 1.1675 -1.1063 2.1535 20 8 -0.0260 -0.9007 2.0319 21 6 1.6745 -1.7958 3.3424 22 6 0.9717 -2.6688 4.1148 23 6 1.8305 -3.1063 5.1607 24 6 1.8362 -3.9832 6.3230 25 6 2.9765 -4.0124 6.9835 26 16 4.1677 -2.9610 6.2415 27 6 3.0439 -2.4709 4.9794 28 7 2.9480 -1.6742 3.8632 29 1 3.6559 -1.1176 3.5028 30 1 -0.3634 0.5990 0.8350 31 1 -0.3634 0.4236 -0.9362 32 1 -0.3633 -1.0227 0.1012 33 1 1.7660 -0.1666 -2.1368 34 1 1.6030 -1.7251 -1.2914 35 1 3.6364 1.2248 -0.7143 36 1 5.6801 3.8568 -0.8665 37 1 3.4984 -2.6527 0.0050 38 1 5.0412 -1.7695 0.1034 39 1 3.6518 -1.5718 2.1970 40 1 3.9921 0.0010 1.4330 41 1 -0.0528 -2.9741 3.9611 42 1 0.9746 -4.5622 6.6210 43 1 3.1543 -4.6071 7.8673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044699937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:35 Heat of formation + Delta-G solvation = 85.196250 kcal Electronic energy + Delta-G solvation = -26792.335526 eV Core-core repulsion = 23159.640528 eV Total energy + Delta-G solvation = -3632.694998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.65237 -39.86586 -37.50356 -35.63227 -34.30052 -32.64257 -32.01479 -30.66665 -29.27206 -28.43795 -27.06162 -24.53300 -23.68395 -23.18375 -23.02355 -21.39079 -20.24186 -19.42281 -19.30957 -17.94129 -17.29376 -16.43826 -15.91690 -15.66378 -15.25533 -14.86119 -14.78026 -14.22719 -14.17054 -14.00962 -13.86357 -13.52831 -13.31026 -13.13868 -12.78491 -12.60408 -12.14493 -12.05791 -11.97231 -11.89691 -11.43422 -11.24815 -10.99786 -10.95583 -10.88422 -10.74654 -10.49844 -10.30610 -10.03301 -9.73393 -9.57924 -9.09187 -9.03385 -8.41231 -8.29811 -7.77306 -7.08610 -5.87793 -3.17365 0.95257 1.20893 1.37061 1.84838 2.74897 2.93699 3.09256 3.35247 3.41807 3.43729 3.44579 4.38389 4.49711 4.66506 4.87561 4.93957 5.21030 5.27367 5.29026 5.36626 5.44593 5.48401 5.57251 5.61214 5.65789 5.79087 5.86864 5.93717 5.97400 6.06831 6.10471 6.22748 6.28312 6.31312 6.40652 6.50711 6.62004 6.64685 6.67461 6.74336 6.92210 7.04352 7.54962 7.60935 8.23387 8.30390 9.42140 9.97755 10.32772 11.34457 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003569 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.241433 B = 7843.225099 C = 9456.524536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.134 4.134 5 C 0.173 3.827 6 H 0.053 0.947 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 C -0.146 4.146 17 C 0.091 3.909 18 N -0.592 5.592 19 C 0.582 3.418 20 O -0.525 6.525 21 C 0.005 3.995 22 C -0.081 4.081 23 C -0.162 4.162 24 C -0.070 4.070 25 C -0.225 4.225 26 S 0.129 5.871 27 C -0.017 4.017 28 N -0.525 5.525 29 H 0.429 0.571 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 -13.478 12.541 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.071 0.929 7 N -0.365 5.365 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.188 4.188 17 C -0.032 4.032 18 N -0.324 5.324 19 C 0.370 3.630 20 O -0.403 6.403 21 C -0.109 4.109 22 C -0.109 4.109 23 C -0.175 4.175 24 C -0.101 4.101 25 C -0.359 4.359 26 S 0.383 5.617 27 C -0.246 4.246 28 N -0.135 5.135 29 H 0.276 0.724 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.120 -12.881 12.604 18.735 hybrid contribution 0.037 0.380 -0.623 0.731 sum -5.084 -12.501 11.981 18.046 Atomic orbital electron populations 1.22211 0.92902 1.03425 1.00703 1.21329 0.95083 0.95939 0.83221 0.89930 1.22257 0.97280 1.00405 0.97335 1.20195 0.90531 0.88104 0.94875 0.92893 1.42531 1.13787 1.04623 1.75544 1.19279 0.89728 0.94115 1.34115 0.91103 1.24732 0.98324 0.95855 1.01829 1.69660 1.36465 1.00514 1.51309 0.86155 0.84570 0.77702 0.77960 1.20569 1.21851 1.21920 1.22488 1.01465 0.98076 0.96740 1.22266 0.79827 1.01896 0.99240 1.48120 1.07447 1.56457 1.20338 1.17085 0.86015 0.78565 0.81332 1.90903 1.15005 1.56250 1.78126 1.20251 0.84528 1.06243 0.99840 1.20639 0.99238 0.97889 0.93105 1.19366 0.93890 1.04121 1.00074 1.20317 0.98315 0.98269 0.93178 1.24853 0.97094 1.07537 1.06385 1.83968 1.12606 1.45288 1.19843 1.23656 1.01107 1.02806 0.96995 1.42662 1.12358 1.37504 1.21003 0.72441 0.91092 0.93728 0.91452 0.90482 0.91907 0.78158 0.93488 0.92992 0.90651 0.90756 0.89263 0.82844 0.83914 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.60 37.16 0.28 -1.80 16 2 C 0.15 2.39 3.20 -67.60 -0.22 2.17 16 3 H 0.08 1.52 6.64 -51.92 -0.34 1.17 16 4 C -0.13 -2.14 5.07 -26.61 -0.13 -2.27 16 5 C 0.17 3.15 3.10 -67.89 -0.21 2.94 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -16.37 4.31 -53.38 -0.23 -16.61 16 8 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -26.68 13.06 55.49 0.72 -25.96 16 12 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 C -0.15 -2.34 5.78 -26.61 -0.15 -2.50 16 17 C 0.09 1.38 5.28 -3.71 -0.02 1.36 16 18 N -0.59 -9.27 2.97 -166.82 -0.50 -9.77 16 19 C 0.58 9.27 7.50 -12.93 -0.10 9.18 16 20 O -0.53 -9.24 12.38 5.17 0.06 -9.17 16 21 C 0.00 0.06 6.39 -82.47 -0.53 -0.46 16 22 C -0.08 -1.08 10.68 -38.81 -0.41 -1.50 16 23 C -0.16 -2.03 6.80 -105.46 -0.72 -2.75 16 24 C -0.07 -0.69 10.42 -38.54 -0.40 -1.09 16 25 C -0.22 -1.95 11.03 28.84 0.32 -1.64 16 26 S 0.13 1.29 23.24 -107.50 -2.50 -1.21 16 27 C -0.02 -0.21 8.41 -15.05 -0.13 -0.34 16 28 N -0.52 -6.80 4.87 -7.94 -0.04 -6.83 16 29 H 0.43 5.14 6.11 -40.82 -0.25 4.89 16 30 H 0.07 1.17 6.73 -51.93 -0.35 0.82 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.07 6.75 -51.93 -0.35 0.72 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.38 9.31 6.06 -40.82 -0.25 9.07 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.07 0.99 3.65 -51.98 -0.19 0.80 16 40 H 0.09 1.56 7.74 -51.93 -0.40 1.15 16 41 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -29.53 351.18 -10.35 -39.88 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.48 Total: 13.41 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.66 Total: -5.44 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.04 Total: -59.17 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.06 Total: -9.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.53 -10.35 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044699937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.081 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds