Wall clock time and date at job start Tue Mar 31 2020 18:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.69798 * 2 1 4 4 C 1.53191 * 109.58547 * 239.64996 * 2 1 3 5 5 C 1.53041 * 109.31149 * 185.57384 * 4 2 1 6 6 H 1.08996 * 109.44826 * 181.37773 * 5 4 2 7 7 N 1.46502 * 109.46260 * 301.34652 * 5 4 2 8 8 C 1.36938 * 120.00001 * 205.06908 * 7 5 4 9 9 H 1.08001 * 120.00130 * 359.71892 * 8 7 5 10 10 C 1.38813 * 119.99789 * 179.72045 * 8 7 5 11 11 N 1.31620 * 120.00171 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99858 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47161 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47172 * 120.00290 * 12 10 8 15 15 H 1.48505 * 109.47007 * 240.00259 * 12 10 8 16 16 C 1.53044 * 109.53595 * 61.36283 * 5 4 2 17 17 C 1.53193 * 109.31422 * 298.63559 * 16 5 4 18 18 N 1.46918 * 108.77479 * 54.63666 * 17 16 5 19 19 C 1.34779 * 120.63349 * 126.41455 * 18 17 16 20 20 O 1.21717 * 120.00146 * 180.33032 * 19 18 17 21 21 C 1.46491 * 119.99599 * 0.32745 * 19 18 17 22 22 C 1.36117 * 125.71015 * 205.79666 * 21 19 18 23 23 C 1.42225 * 107.62510 * 179.97438 * 22 21 19 24 24 C 1.45595 * 140.77541 * 180.02562 * 23 22 21 25 25 C 1.31809 * 114.63079 * 180.02562 * 24 23 22 26 26 S 1.75356 * 111.24579 * 359.96258 * 25 24 23 27 27 C 1.38166 * 106.99741 * 359.97438 * 23 22 21 28 28 N 1.37467 * 108.16789 * 359.75687 * 27 23 22 29 29 H 0.96999 * 125.68520 * 180.27057 * 28 27 23 30 30 H 1.09001 * 109.47267 * 305.65519 * 1 2 3 31 31 H 1.08996 * 109.47534 * 65.65641 * 1 2 3 32 32 H 1.09004 * 109.47124 * 185.65122 * 1 2 3 33 33 H 1.09000 * 109.49735 * 65.62833 * 4 2 1 34 34 H 1.08991 * 109.49793 * 305.52407 * 4 2 1 35 35 H 0.97007 * 119.99543 * 24.78531 * 7 5 4 36 36 H 0.97003 * 120.00205 * 180.02562 * 11 10 8 37 37 H 1.09000 * 109.49599 * 58.59040 * 16 5 4 38 38 H 1.09000 * 109.49478 * 178.67752 * 16 5 4 39 39 H 1.09002 * 109.58601 * 174.41982 * 17 16 5 40 40 H 1.09004 * 109.58622 * 294.70358 * 17 16 5 41 41 H 1.07998 * 126.18187 * 359.97438 * 22 21 19 42 42 H 1.08002 * 122.68833 * 359.93916 * 24 23 22 43 43 H 1.08001 * 124.38250 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1703 6 1 3.9375 -1.3447 -2.0670 7 7 4.1570 0.4900 -1.0750 8 6 5.4409 0.7043 -1.5003 9 1 6.0204 -0.1138 -1.9019 10 6 5.9974 1.9732 -1.4154 11 7 5.2913 2.9701 -0.9255 12 14 7.7490 2.2654 -1.9949 13 1 8.3231 0.9915 -2.4976 14 1 7.7478 3.2730 -3.0858 15 1 8.5688 2.7639 -0.8614 16 6 3.9569 -1.6656 0.0634 17 6 3.4650 -0.9469 1.3237 18 7 2.0226 -0.6996 1.1944 19 6 1.1675 -1.1063 2.1535 20 8 -0.0260 -0.9007 2.0319 21 6 1.6745 -1.7958 3.3424 22 6 0.9717 -2.6688 4.1148 23 6 1.8305 -3.1063 5.1607 24 6 1.8362 -3.9832 6.3230 25 6 2.9765 -4.0124 6.9835 26 16 4.1677 -2.9610 6.2415 27 6 3.0439 -2.4709 4.9794 28 7 2.9480 -1.6742 3.8632 29 1 3.6559 -1.1176 3.5028 30 1 -0.3634 0.5990 0.8350 31 1 -0.3634 0.4236 -0.9362 32 1 -0.3633 -1.0227 0.1012 33 1 1.7660 -0.1666 -2.1368 34 1 1.6030 -1.7251 -1.2914 35 1 3.6364 1.2248 -0.7143 36 1 5.6801 3.8568 -0.8665 37 1 3.4984 -2.6527 0.0050 38 1 5.0412 -1.7695 0.1034 39 1 3.6518 -1.5718 2.1970 40 1 3.9921 0.0010 1.4330 41 1 -0.0528 -2.9741 3.9611 42 1 0.9746 -4.5622 6.6210 43 1 3.1543 -4.6071 7.8673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044699937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:34 Heat of formation + Delta-G solvation = 68.765857 kcal Electronic energy + Delta-G solvation = -26793.048001 eV Core-core repulsion = 23159.640528 eV Total energy + Delta-G solvation = -3633.407473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.70930 -41.07104 -38.89268 -36.51428 -35.90217 -33.97865 -33.67874 -31.67653 -30.94775 -29.47958 -28.38320 -25.91234 -25.49959 -24.28080 -23.98888 -22.60743 -21.30614 -20.67974 -20.27286 -19.34256 -18.99578 -17.58399 -17.20632 -16.92664 -16.53605 -16.08159 -15.78190 -15.61282 -15.56955 -15.34666 -15.05127 -14.91168 -14.59600 -14.35994 -14.20693 -13.68806 -13.48480 -13.40398 -13.06820 -12.92443 -12.81697 -12.75073 -12.57931 -12.47055 -12.08922 -12.08057 -11.95473 -11.72793 -11.66418 -11.45241 -10.94733 -10.53308 -10.36142 -9.67489 -9.26645 -8.99500 -8.64704 -7.93219 -5.20838 0.09521 0.25637 0.45441 1.09910 1.46966 1.48815 1.57225 1.73214 1.76555 2.09106 2.33812 2.56397 3.27797 3.40370 3.72195 3.81093 3.82607 3.89789 3.99859 4.05160 4.18260 4.27621 4.37704 4.43320 4.53494 4.60412 4.65450 4.77677 4.81314 4.90279 4.95345 5.02065 5.10088 5.19037 5.20358 5.27868 5.28823 5.37932 5.45637 5.55389 5.61894 5.68189 6.04457 6.28539 6.29911 6.97834 7.36080 8.10631 8.34449 9.29954 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003569 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.241433 B = 7843.225099 C = 9456.524536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.147 3.853 3 H 0.056 0.944 4 C -0.123 4.123 5 C 0.167 3.833 6 H 0.052 0.948 7 N -0.730 5.730 8 C -0.231 4.231 9 H 0.077 0.923 10 C -0.072 4.072 11 N -0.968 5.968 12 Si 0.964 3.036 13 H -0.266 1.266 14 H -0.299 1.299 15 H -0.297 1.297 16 C -0.138 4.138 17 C 0.099 3.901 18 N -0.592 5.592 19 C 0.583 3.417 20 O -0.546 6.546 21 C -0.017 4.017 22 C -0.081 4.081 23 C -0.174 4.174 24 C -0.084 4.084 25 C -0.210 4.210 26 S 0.142 5.858 27 C -0.034 4.034 28 N -0.527 5.527 29 H 0.429 0.571 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -16.010 13.766 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.045 3.955 3 H 0.074 0.926 4 C -0.162 4.162 5 C 0.058 3.942 6 H 0.070 0.930 7 N -0.371 5.371 8 C -0.363 4.363 9 H 0.095 0.905 10 C -0.265 4.265 11 N -0.619 5.619 12 Si 0.795 3.205 13 H -0.190 1.190 14 H -0.227 1.227 15 H -0.225 1.225 16 C -0.179 4.179 17 C -0.024 4.024 18 N -0.323 5.323 19 C 0.372 3.628 20 O -0.425 6.425 21 C -0.130 4.130 22 C -0.109 4.109 23 C -0.187 4.187 24 C -0.114 4.114 25 C -0.343 4.343 26 S 0.395 5.605 27 C -0.262 4.262 28 N -0.138 5.138 29 H 0.276 0.724 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.207 0.793 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.180 0.820 42 H 0.185 0.815 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.873 -15.475 13.826 21.316 hybrid contribution -0.067 1.056 -0.904 1.391 sum -4.940 -14.419 12.922 19.982 Atomic orbital electron populations 1.22058 0.91961 1.03070 1.00825 1.21232 0.95681 0.94775 0.83849 0.92593 1.22148 0.95619 1.01428 0.96970 1.20418 0.91793 0.86184 0.95766 0.93039 1.42670 1.13000 1.06186 1.75284 1.19627 0.90725 0.93940 1.31961 0.90519 1.25421 1.01715 0.96023 1.03297 1.69809 1.37917 1.00571 1.53630 0.85197 0.80766 0.77656 0.76880 1.19046 1.22701 1.22476 1.22353 1.01251 0.98647 0.95641 1.22160 0.79355 1.00904 0.99992 1.48099 1.07554 1.56414 1.20262 1.17275 0.85738 0.78192 0.81584 1.90885 1.15800 1.57126 1.78688 1.20028 0.85512 1.07446 1.00010 1.20863 0.99673 0.97305 0.93043 1.19741 0.93556 1.04675 1.00731 1.20559 0.99796 0.98560 0.92508 1.25308 0.95931 1.06422 1.06660 1.84008 1.12459 1.45274 1.18709 1.24124 1.02330 1.02546 0.97176 1.42541 1.11953 1.37873 1.21454 0.72386 0.92567 0.92307 0.91598 0.90632 0.89811 0.79338 0.94294 0.90792 0.91242 0.88519 0.91905 0.82027 0.81456 0.78007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.74 7.60 71.98 0.55 -3.19 16 2 C 0.15 4.84 3.20 44.97 0.14 4.99 16 3 H 0.06 2.15 6.64 -2.38 -0.02 2.14 16 4 C -0.12 -3.82 5.07 30.67 0.16 -3.67 16 5 C 0.17 5.96 3.10 45.02 0.14 6.10 16 6 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 7 N -0.73 -33.47 4.31 -322.80 -1.39 -34.86 16 8 C -0.23 -11.87 9.93 84.03 0.83 -11.03 16 9 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 10 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 11 N -0.97 -56.95 13.06 21.65 0.28 -56.67 16 12 Si 0.96 44.51 29.55 68.60 2.03 46.54 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 15 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 16 C -0.14 -4.27 5.78 30.67 0.18 -4.09 16 17 C 0.10 3.00 5.28 86.36 0.46 3.46 16 18 N -0.59 -18.60 2.97 -799.89 -2.38 -20.97 16 19 C 0.58 18.55 7.50 86.39 0.65 19.20 16 20 O -0.55 -19.26 12.38 -4.40 -0.05 -19.31 16 21 C -0.02 -0.48 6.39 39.81 0.25 -0.23 16 22 C -0.08 -2.08 10.68 22.77 0.24 -1.84 16 23 C -0.17 -4.07 6.80 -20.41 -0.14 -4.20 16 24 C -0.08 -1.41 10.42 23.40 0.24 -1.16 16 25 C -0.21 -2.90 11.03 67.05 0.74 -2.16 16 26 S 0.14 2.51 23.24 -56.49 -1.31 1.19 16 27 C -0.03 -0.80 8.41 83.79 0.70 -0.09 16 28 N -0.53 -13.37 4.87 -179.04 -0.87 -14.25 16 29 H 0.43 10.25 6.11 -92.71 -0.57 9.69 16 30 H 0.06 1.89 6.73 -2.39 -0.02 1.87 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.05 6.75 -2.38 -0.02 2.03 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 35 H 0.37 18.70 6.06 -92.70 -0.56 18.14 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.10 2.52 3.65 -2.49 -0.01 2.51 16 40 H 0.06 2.26 7.74 -2.38 -0.02 2.24 16 41 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -63.75 351.18 1.85 -61.90 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.06 Total: 37.85 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.61 Total: -1.41 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -4.36 Total: -126.76 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.31 Total: 1.19 kcal Total: -63.75 1.85 -61.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044699937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.662 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds