Wall clock time and date at job start Tue Mar 31 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.70157 * 2 1 4 4 C 1.53186 * 109.58650 * 239.64240 * 2 1 3 5 5 C 1.53047 * 109.31402 * 185.57969 * 4 2 1 6 6 H 1.09002 * 109.45465 * 301.34486 * 5 4 2 7 7 N 1.46492 * 109.46227 * 181.38476 * 5 4 2 8 8 C 1.36932 * 120.00189 * 154.99648 * 7 5 4 9 9 H 1.07999 * 119.99850 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00445 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00402 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99641 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46834 * 90.00331 * 12 10 8 14 14 H 1.48503 * 109.47079 * 210.00203 * 12 10 8 15 15 H 1.48498 * 109.47141 * 330.00005 * 12 10 8 16 16 C 1.53044 * 109.53685 * 61.36133 * 5 4 2 17 17 C 1.53619 * 109.24482 * 298.51447 * 16 5 4 18 18 N 1.46931 * 108.54480 * 54.85590 * 17 16 5 19 19 C 1.34776 * 120.63011 * 126.36563 * 18 17 16 20 20 O 1.21727 * 119.99588 * 188.69493 * 19 18 17 21 21 C 1.46487 * 120.00187 * 8.70315 * 19 18 17 22 22 C 1.36110 * 125.71531 * 209.88872 * 21 19 18 23 23 C 1.42222 * 107.63278 * 179.97438 * 22 21 19 24 24 C 1.45587 * 140.78277 * 180.02562 * 23 22 21 25 25 C 1.31812 * 114.63403 * 180.02562 * 24 23 22 26 26 S 1.75354 * 111.24387 * 359.97438 * 25 24 23 27 27 C 1.38175 * 106.99435 * 0.02562 * 23 22 21 28 28 N 1.37464 * 108.16603 * 359.97438 * 27 23 22 29 29 H 0.97002 * 125.68607 * 179.97438 * 28 27 23 30 30 H 1.09003 * 109.47254 * 302.18741 * 1 2 3 31 31 H 1.08998 * 109.47001 * 62.18722 * 1 2 3 32 32 H 1.09002 * 109.47428 * 182.18437 * 1 2 3 33 33 H 1.09005 * 109.49603 * 305.52631 * 4 2 1 34 34 H 1.08998 * 109.49865 * 65.59452 * 4 2 1 35 35 H 0.97005 * 119.99926 * 335.00467 * 7 5 4 36 36 H 0.96991 * 120.00034 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49258 * 58.59097 * 16 5 4 38 38 H 1.09002 * 109.49463 * 178.68416 * 16 5 4 39 39 H 1.08999 * 109.73867 * 295.12204 * 17 16 5 40 40 H 1.08997 * 109.66724 * 174.54851 * 17 16 5 41 41 H 1.08008 * 126.18110 * 0.22689 * 22 21 19 42 42 H 1.07996 * 122.68562 * 359.97438 * 24 23 22 43 43 H 1.08002 * 124.37875 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2453 5 6 3.5675 -0.8481 -1.1701 6 1 4.0061 0.1473 -1.0993 7 7 4.0652 -1.5158 -2.3752 8 6 5.3497 -1.2989 -2.7973 9 1 5.9959 -0.6357 -2.2415 10 6 5.8212 -1.9312 -3.9395 11 7 7.0559 -1.7230 -4.3450 12 14 4.7031 -3.0777 -4.9013 13 1 3.9696 -2.3026 -5.9340 14 1 5.5199 -4.1292 -5.5589 15 1 3.7310 -3.7128 -3.9756 16 6 3.9569 -1.6657 0.0637 17 6 3.4656 -0.9420 1.3265 18 7 2.0225 -0.6995 1.1946 19 6 1.1674 -1.1061 2.1537 20 8 -0.0335 -1.0437 1.9647 21 6 1.6831 -1.6230 3.4236 22 6 1.0728 -2.5510 4.2103 23 6 1.9046 -2.7698 5.3430 24 6 1.9602 -3.5571 6.5663 25 6 3.0332 -3.3513 7.3038 26 16 4.0920 -2.1633 6.5674 27 6 3.0079 -1.9507 5.1980 28 7 2.8703 -1.2503 4.0232 29 1 3.5015 -0.6019 3.6737 30 1 -0.3634 0.5474 0.8697 31 1 -0.3633 0.4795 -0.9089 32 1 -0.3634 -1.0269 0.0392 33 1 1.6029 -1.7254 -1.2912 34 1 1.7655 -0.1672 -2.1368 35 1 3.4848 -2.1117 -2.8743 36 1 7.3854 -2.1652 -5.1429 37 1 3.4982 -2.6529 0.0054 38 1 5.0412 -1.7696 0.1038 39 1 3.9877 0.0090 1.4324 40 1 3.6532 -1.5636 2.2019 41 1 0.1294 -3.0368 4.0085 42 1 1.1841 -4.2534 6.8475 43 1 3.2346 -3.8505 8.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044699938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:41 Heat of formation + Delta-G solvation = 75.467424 kcal Electronic energy + Delta-G solvation = -26317.008248 eV Core-core repulsion = 22683.891376 eV Total energy + Delta-G solvation = -3633.116871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.74067 -40.03481 -37.55859 -35.70195 -34.75361 -32.81957 -32.04551 -30.76562 -29.97709 -28.59070 -27.20039 -24.66398 -23.48154 -23.25037 -22.75445 -21.14705 -20.37708 -20.08255 -19.44918 -18.42967 -17.62282 -16.66435 -16.09364 -15.75962 -15.34717 -14.94972 -14.86910 -14.57468 -14.38050 -14.14035 -13.83506 -13.71238 -13.45073 -13.08867 -12.87398 -12.55029 -12.47474 -12.30126 -12.07559 -11.96559 -11.93955 -11.51132 -11.08141 -11.07054 -11.01547 -10.97865 -10.62315 -10.34620 -9.99948 -9.72268 -9.66098 -9.33337 -9.00509 -8.66208 -8.49432 -7.90635 -7.36205 -5.84326 -3.20690 0.81751 1.09121 1.23144 1.73461 2.57869 2.73300 2.89245 3.26176 3.33267 3.36620 3.41480 4.22510 4.53051 4.55240 4.74437 4.77988 4.89338 5.03831 5.10835 5.17586 5.26569 5.32113 5.36239 5.46622 5.48890 5.60407 5.70551 5.82619 5.85287 5.91356 5.95107 5.96693 6.13954 6.20580 6.24932 6.27391 6.36948 6.47372 6.58400 6.69502 6.83626 6.90175 7.28859 7.90215 8.00355 8.34639 9.12465 9.85347 10.04819 11.33750 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.003024 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.955977 B = 9256.457702 C =10420.806101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.057 0.943 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.090 0.910 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.148 4.148 17 C 0.092 3.908 18 N -0.601 5.601 19 C 0.586 3.414 20 O -0.519 6.519 21 C 0.001 3.999 22 C -0.078 4.078 23 C -0.161 4.161 24 C -0.070 4.070 25 C -0.223 4.223 26 S 0.132 5.868 27 C -0.014 4.014 28 N -0.524 5.524 29 H 0.424 0.576 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 0.460 22.707 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.189 4.189 17 C -0.031 4.031 18 N -0.334 5.334 19 C 0.374 3.626 20 O -0.395 6.395 21 C -0.112 4.112 22 C -0.106 4.106 23 C -0.173 4.173 24 C -0.101 4.101 25 C -0.357 4.357 26 S 0.385 5.615 27 C -0.242 4.242 28 N -0.130 5.130 29 H 0.265 0.735 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.239 1.310 22.831 24.664 hybrid contribution -1.390 -1.286 -1.307 2.301 sum -10.630 0.024 21.523 24.005 Atomic orbital electron populations 1.22230 0.92545 1.03890 1.00779 1.21350 0.95639 0.94987 0.83373 0.90644 1.22355 0.97446 1.01159 0.96916 1.20130 0.90840 0.95297 0.86318 0.92521 1.42782 1.13203 1.54868 1.28020 1.19043 0.87666 1.23536 1.07404 0.89210 1.24674 0.96092 1.00014 0.98180 1.69695 1.15070 1.47089 1.26133 0.86562 0.80358 0.81266 0.80404 1.21010 1.21709 1.20332 1.22701 1.02179 0.99871 0.94169 1.22254 0.79613 1.00660 1.00609 1.48171 1.07489 1.57323 1.20420 1.17086 0.86020 0.77699 0.81800 1.90918 1.14582 1.54294 1.79745 1.20163 0.88579 1.04970 0.97523 1.20675 0.99711 0.98354 0.91851 1.19364 0.96713 1.02813 0.98443 1.20328 0.98410 0.99306 0.92037 1.24868 0.99366 1.05881 1.05573 1.83968 1.22037 1.43774 1.11710 1.23604 1.02852 1.02496 0.95292 1.41940 1.18973 1.35692 1.16431 0.73516 0.91390 0.93503 0.90787 0.91672 0.90306 0.80566 0.92981 0.91999 0.90038 0.91088 0.90186 0.82813 0.83816 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.59 37.16 0.28 -1.50 16 2 C 0.15 1.95 3.49 -67.60 -0.24 1.71 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.10 4.84 -26.61 -0.13 -2.23 16 5 C 0.18 3.25 2.73 -67.89 -0.19 3.06 16 6 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.75 -16.84 4.92 -53.39 -0.26 -17.10 16 8 C -0.25 -6.67 10.41 -15.06 -0.16 -6.83 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 11 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 12 Si 0.88 21.77 27.74 -169.99 -4.71 17.05 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 16 C -0.15 -2.33 5.67 -26.39 -0.15 -2.48 16 17 C 0.09 1.10 5.28 -3.49 -0.02 1.08 16 18 N -0.60 -7.71 2.97 -166.55 -0.49 -8.20 16 19 C 0.59 8.00 7.49 -12.94 -0.10 7.91 16 20 O -0.52 -8.11 12.41 5.16 0.06 -8.05 16 21 C 0.00 0.01 6.07 -82.47 -0.50 -0.49 16 22 C -0.08 -0.94 10.71 -38.82 -0.42 -1.36 16 23 C -0.16 -1.81 6.80 -105.46 -0.72 -2.53 16 24 C -0.07 -0.62 10.42 -38.55 -0.40 -1.02 16 25 C -0.22 -1.71 11.03 28.84 0.32 -1.40 16 26 S 0.13 1.12 23.24 -107.50 -2.50 -1.38 16 27 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 28 N -0.52 -5.51 4.75 -7.95 -0.04 -5.55 16 29 H 0.42 3.62 7.07 -40.82 -0.29 3.33 16 30 H 0.07 0.93 6.76 -51.93 -0.35 0.57 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.08 6.74 -51.93 -0.35 0.73 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.36 8.17 5.66 -40.82 -0.23 7.94 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.88 4.77 -51.93 -0.25 0.63 16 41 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -32.09 353.80 -10.17 -42.26 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.71 Total: 9.79 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.63 Total: -6.25 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.02 Total: -58.75 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.06 Total: -8.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.09 -10.17 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044699938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.727 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds