Wall clock time and date at job start Tue Mar 31 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.70157 * 2 1 4 4 C 1.53186 * 109.58650 * 239.64240 * 2 1 3 5 5 C 1.53047 * 109.31402 * 185.57969 * 4 2 1 6 6 H 1.09002 * 109.45465 * 301.34486 * 5 4 2 7 7 N 1.46492 * 109.46227 * 181.38476 * 5 4 2 8 8 C 1.36932 * 120.00189 * 154.99648 * 7 5 4 9 9 H 1.07999 * 119.99850 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00445 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00402 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99641 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46834 * 90.00331 * 12 10 8 14 14 H 1.48503 * 109.47079 * 210.00203 * 12 10 8 15 15 H 1.48498 * 109.47141 * 330.00005 * 12 10 8 16 16 C 1.53044 * 109.53685 * 61.36133 * 5 4 2 17 17 C 1.53619 * 109.24482 * 298.51447 * 16 5 4 18 18 N 1.46931 * 108.54480 * 54.85590 * 17 16 5 19 19 C 1.34776 * 120.63011 * 126.36563 * 18 17 16 20 20 O 1.21727 * 119.99588 * 188.69493 * 19 18 17 21 21 C 1.46487 * 120.00187 * 8.70315 * 19 18 17 22 22 C 1.36110 * 125.71531 * 209.88872 * 21 19 18 23 23 C 1.42222 * 107.63278 * 179.97438 * 22 21 19 24 24 C 1.45587 * 140.78277 * 180.02562 * 23 22 21 25 25 C 1.31812 * 114.63403 * 180.02562 * 24 23 22 26 26 S 1.75354 * 111.24387 * 359.97438 * 25 24 23 27 27 C 1.38175 * 106.99435 * 0.02562 * 23 22 21 28 28 N 1.37464 * 108.16603 * 359.97438 * 27 23 22 29 29 H 0.97002 * 125.68607 * 179.97438 * 28 27 23 30 30 H 1.09003 * 109.47254 * 302.18741 * 1 2 3 31 31 H 1.08998 * 109.47001 * 62.18722 * 1 2 3 32 32 H 1.09002 * 109.47428 * 182.18437 * 1 2 3 33 33 H 1.09005 * 109.49603 * 305.52631 * 4 2 1 34 34 H 1.08998 * 109.49865 * 65.59452 * 4 2 1 35 35 H 0.97005 * 119.99926 * 335.00467 * 7 5 4 36 36 H 0.96991 * 120.00034 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49258 * 58.59097 * 16 5 4 38 38 H 1.09002 * 109.49463 * 178.68416 * 16 5 4 39 39 H 1.08999 * 109.73867 * 295.12204 * 17 16 5 40 40 H 1.08997 * 109.66724 * 174.54851 * 17 16 5 41 41 H 1.08008 * 126.18110 * 0.22689 * 22 21 19 42 42 H 1.07996 * 122.68562 * 359.97438 * 24 23 22 43 43 H 1.08002 * 124.37875 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2453 5 6 3.5675 -0.8481 -1.1701 6 1 4.0061 0.1473 -1.0993 7 7 4.0652 -1.5158 -2.3752 8 6 5.3497 -1.2989 -2.7973 9 1 5.9959 -0.6357 -2.2415 10 6 5.8212 -1.9312 -3.9395 11 7 7.0559 -1.7230 -4.3450 12 14 4.7031 -3.0777 -4.9013 13 1 3.9696 -2.3026 -5.9340 14 1 5.5199 -4.1292 -5.5589 15 1 3.7310 -3.7128 -3.9756 16 6 3.9569 -1.6657 0.0637 17 6 3.4656 -0.9420 1.3265 18 7 2.0225 -0.6995 1.1946 19 6 1.1674 -1.1061 2.1537 20 8 -0.0335 -1.0437 1.9647 21 6 1.6831 -1.6230 3.4236 22 6 1.0728 -2.5510 4.2103 23 6 1.9046 -2.7698 5.3430 24 6 1.9602 -3.5571 6.5663 25 6 3.0332 -3.3513 7.3038 26 16 4.0920 -2.1633 6.5674 27 6 3.0079 -1.9507 5.1980 28 7 2.8703 -1.2503 4.0232 29 1 3.5015 -0.6019 3.6737 30 1 -0.3634 0.5474 0.8697 31 1 -0.3633 0.4795 -0.9089 32 1 -0.3634 -1.0269 0.0392 33 1 1.6029 -1.7254 -1.2912 34 1 1.7655 -0.1672 -2.1368 35 1 3.4848 -2.1117 -2.8743 36 1 7.3854 -2.1652 -5.1429 37 1 3.4982 -2.6529 0.0054 38 1 5.0412 -1.7696 0.1038 39 1 3.9877 0.0090 1.4324 40 1 3.6532 -1.5636 2.2019 41 1 0.1294 -3.0368 4.0085 42 1 1.1841 -4.2534 6.8475 43 1 3.2346 -3.8505 8.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044699938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:40 Heat of formation + Delta-G solvation = 55.790394 kcal Electronic energy + Delta-G solvation = -26317.861508 eV Core-core repulsion = 22683.891376 eV Total energy + Delta-G solvation = -3633.970131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63245 -41.05986 -38.83184 -36.52213 -36.24536 -34.03036 -33.76465 -31.67465 -31.56708 -29.50341 -28.37732 -26.07123 -24.74850 -24.27541 -23.83597 -22.29332 -21.61253 -21.13583 -20.22028 -19.77422 -19.18906 -17.62506 -17.17312 -16.79141 -16.76551 -16.08329 -15.93162 -15.60841 -15.53955 -15.35807 -14.98831 -14.86797 -14.67917 -14.52121 -14.09882 -13.86931 -13.61990 -13.44705 -13.23262 -13.03752 -12.91321 -12.77215 -12.64080 -12.47566 -12.17682 -12.11158 -11.98955 -11.80878 -11.73915 -11.43417 -10.97259 -10.54029 -10.41142 -9.75250 -9.35661 -9.24608 -8.63959 -8.03272 -5.36377 0.08378 0.27575 0.44585 1.08586 1.37348 1.38865 1.46053 1.65929 1.76282 2.09224 2.34979 2.47056 3.26950 3.30089 3.46038 3.71528 3.82132 3.87297 3.97701 4.03015 4.12761 4.24507 4.39596 4.42539 4.52434 4.55080 4.62330 4.64929 4.76375 4.79910 4.90944 4.97381 5.07486 5.13606 5.19018 5.26969 5.37510 5.40826 5.45065 5.61273 5.66392 5.76445 6.11773 6.20929 6.25317 6.95335 7.06621 7.83114 8.00997 9.18015 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.003024 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.955977 B = 9256.457702 C =10420.806101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.094 0.906 4 C -0.129 4.129 5 C 0.177 3.823 6 H 0.055 0.945 7 N -0.752 5.752 8 C -0.225 4.225 9 H 0.063 0.937 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.279 1.279 14 H -0.299 1.299 15 H -0.257 1.257 16 C -0.140 4.140 17 C 0.102 3.898 18 N -0.600 5.600 19 C 0.588 3.412 20 O -0.542 6.542 21 C -0.014 4.014 22 C -0.089 4.089 23 C -0.178 4.178 24 C -0.088 4.088 25 C -0.212 4.212 26 S 0.150 5.850 27 C -0.028 4.028 28 N -0.519 5.519 29 H 0.431 0.569 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.363 0.637 36 H 0.257 0.743 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.385 0.215 24.642 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.111 0.889 4 C -0.168 4.168 5 C 0.069 3.931 6 H 0.073 0.927 7 N -0.394 5.394 8 C -0.355 4.355 9 H 0.081 0.919 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.205 1.205 14 H -0.225 1.225 15 H -0.182 1.182 16 C -0.181 4.181 17 C -0.021 4.021 18 N -0.332 5.332 19 C 0.376 3.624 20 O -0.421 6.421 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.191 4.191 24 C -0.118 4.118 25 C -0.346 4.346 26 S 0.403 5.597 27 C -0.256 4.256 28 N -0.126 5.126 29 H 0.274 0.726 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.196 0.804 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.388 1.082 24.814 26.922 hybrid contribution -1.014 -1.174 -1.746 2.336 sum -11.402 -0.092 23.068 25.732 Atomic orbital electron populations 1.22085 0.92246 1.02793 1.01277 1.21365 0.95762 0.95517 0.82444 0.88855 1.22231 0.95050 1.01208 0.98314 1.20383 0.92630 0.94884 0.85169 0.92738 1.42837 1.11619 1.55300 1.29666 1.19023 0.88893 1.21387 1.06242 0.91921 1.25430 0.97560 1.02554 0.99852 1.69863 1.17310 1.49174 1.27015 0.85487 0.78617 0.78992 0.79105 1.20497 1.22548 1.18187 1.22490 1.01081 0.99385 0.95118 1.22211 0.79243 1.01685 0.98945 1.48171 1.07642 1.57125 1.20290 1.17223 0.85733 0.77186 0.82225 1.90908 1.15554 1.55275 1.80346 1.19963 0.89612 1.05784 0.97375 1.20864 1.00043 0.98464 0.92352 1.19710 0.96728 1.03540 0.99108 1.20554 0.99693 1.00008 0.91506 1.25301 0.98307 1.04828 1.06143 1.83966 1.21478 1.43813 1.10403 1.24015 1.03578 1.02317 0.95721 1.41838 1.18581 1.35805 1.16400 0.72602 0.91939 0.91967 0.92593 0.92397 0.89829 0.80427 0.93429 0.93166 0.91680 0.88647 0.88886 0.82625 0.81902 0.78249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 7.59 71.98 0.55 -2.56 16 2 C 0.15 3.67 3.49 44.97 0.16 3.83 16 3 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.13 -3.67 4.84 30.67 0.15 -3.52 16 5 C 0.18 6.08 2.73 45.02 0.12 6.20 16 6 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 7 N -0.75 -33.39 4.92 -322.81 -1.59 -34.98 16 8 C -0.22 -12.24 10.41 84.03 0.87 -11.37 16 9 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 10 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 11 N -0.98 -61.94 13.97 21.65 0.30 -61.64 16 12 Si 0.95 45.14 27.74 68.60 1.90 47.04 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 15 H -0.26 -11.18 6.52 99.48 0.65 -10.54 16 16 C -0.14 -4.28 5.67 30.82 0.17 -4.10 16 17 C 0.10 2.27 5.28 86.51 0.46 2.73 16 18 N -0.60 -14.45 2.97 -799.06 -2.37 -16.82 16 19 C 0.59 15.48 7.49 86.39 0.65 16.13 16 20 O -0.54 -16.70 12.41 -4.43 -0.06 -16.75 16 21 C -0.01 -0.33 6.07 39.81 0.24 -0.09 16 22 C -0.09 -2.09 10.71 22.76 0.24 -1.85 16 23 C -0.18 -3.78 6.80 -20.41 -0.14 -3.92 16 24 C -0.09 -1.36 10.42 23.39 0.24 -1.12 16 25 C -0.21 -2.64 11.03 67.04 0.74 -1.90 16 26 S 0.15 2.21 23.24 -56.49 -1.31 0.89 16 27 C -0.03 -0.56 8.41 83.79 0.70 0.15 16 28 N -0.52 -10.18 4.75 -179.05 -0.85 -11.03 16 29 H 0.43 6.59 7.07 -92.71 -0.66 5.94 16 30 H 0.06 1.62 6.76 -2.39 -0.02 1.60 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.58 6.74 -2.39 -0.02 1.57 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.36 15.89 5.66 -92.70 -0.52 15.36 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.09 1.88 4.77 -2.39 -0.01 1.87 16 41 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -70.12 353.80 1.47 -68.64 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.18 Total: 29.17 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.63 Total: -4.53 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -4.51 Total: -124.47 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.06 Total: -16.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.31 Total: 0.89 kcal Total: -70.12 1.47 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044699938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.435 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds