Wall clock time and date at job start Tue Mar 31 2020 18:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.69684 * 2 1 4 4 C 1.53190 * 109.58736 * 239.63939 * 2 1 3 5 5 C 1.53031 * 109.31169 * 185.57453 * 4 2 1 6 6 H 1.09001 * 109.46450 * 301.34748 * 5 4 2 7 7 N 1.46498 * 109.45893 * 181.38644 * 5 4 2 8 8 C 1.36948 * 120.00176 * 154.93448 * 7 5 4 9 9 H 1.07998 * 119.99577 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00203 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00060 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99940 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.46969 * 120.00190 * 12 10 8 15 15 H 1.48510 * 109.46995 * 239.99868 * 12 10 8 16 16 C 1.53039 * 109.53862 * 61.37020 * 5 4 2 17 17 C 1.53196 * 109.30917 * 298.62887 * 16 5 4 18 18 N 1.46926 * 108.77262 * 54.64214 * 17 16 5 19 19 C 1.34776 * 120.63751 * 126.11540 * 18 17 16 20 20 O 1.21728 * 120.00605 * 180.53858 * 19 18 17 21 21 C 1.46458 * 119.99296 * 0.53477 * 19 18 17 22 22 C 1.37467 * 125.80364 * 205.90983 * 21 19 18 23 23 C 1.40656 * 107.55559 * 179.97438 * 22 21 19 24 24 S 1.76022 * 142.39457 * 179.97438 * 23 22 21 25 25 C 1.75587 * 91.31026 * 180.02562 * 24 23 22 26 26 C 1.32770 * 110.47674 * 359.97438 * 25 24 23 27 27 C 1.38243 * 108.03722 * 0.02562 * 23 22 21 28 28 N 1.37914 * 125.80903 * 25.60450 * 21 19 18 29 29 H 0.96996 * 125.68407 * 359.97438 * 28 21 19 30 30 H 1.08994 * 109.47124 * 305.50502 * 1 2 3 31 31 H 1.08993 * 109.47183 * 65.50914 * 1 2 3 32 32 H 1.09008 * 109.46382 * 185.50883 * 1 2 3 33 33 H 1.09010 * 109.49711 * 65.62191 * 4 2 1 34 34 H 1.08998 * 109.50002 * 305.53326 * 4 2 1 35 35 H 0.96998 * 120.00492 * 334.93406 * 7 5 4 36 36 H 0.97003 * 120.00414 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.50110 * 178.68511 * 16 5 4 38 38 H 1.08998 * 109.50182 * 58.58240 * 16 5 4 39 39 H 1.08990 * 109.58828 * 294.84793 * 17 16 5 40 40 H 1.09005 * 109.69891 * 174.48933 * 17 16 5 41 41 H 1.08002 * 126.21756 * 0.02562 * 22 21 19 42 42 H 1.08001 * 124.76156 * 179.97438 * 25 24 23 43 43 H 1.08002 * 122.16622 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 1 4.0061 0.1474 -1.0993 7 7 4.0652 -1.5158 -2.3752 8 6 5.3494 -1.2977 -2.7981 9 1 5.9950 -0.6331 -2.2434 10 6 5.8208 -1.9301 -3.9403 11 7 5.0335 -2.7389 -4.6172 12 14 7.5722 -1.6320 -4.5175 13 1 8.2449 -0.6871 -3.5903 14 1 8.3127 -2.9190 -4.5369 15 1 7.5509 -1.0525 -5.8847 16 6 3.9570 -1.6656 0.0636 17 6 3.4651 -0.9467 1.3238 18 7 2.0226 -0.6995 1.1946 19 6 1.1668 -1.1113 2.1509 20 8 -0.0272 -0.9090 2.0274 21 6 1.6735 -1.8022 3.3386 22 6 0.9674 -2.6901 4.1150 23 6 1.8186 -3.1198 5.1490 24 16 1.8781 -4.1694 6.5609 25 6 3.5432 -3.7128 6.8802 26 6 3.9688 -2.8433 5.9716 27 6 3.0374 -2.4868 4.9910 28 7 2.9421 -1.6773 3.8651 29 1 3.6494 -1.1165 3.5099 30 1 -0.3633 0.5968 0.8365 31 1 -0.3633 0.4260 -0.9351 32 1 -0.3632 -1.0230 0.0987 33 1 1.7660 -0.1670 -2.1369 34 1 1.6030 -1.7254 -1.2912 35 1 3.4853 -2.1125 -2.8737 36 1 5.3630 -3.1812 -5.4152 37 1 5.0413 -1.7694 0.1039 38 1 3.4984 -2.6528 0.0055 39 1 3.9904 0.0022 1.4317 40 1 3.6521 -1.5694 2.1987 41 1 -0.0549 -3.0016 3.9589 42 1 4.1378 -4.0869 7.7006 43 1 4.9693 -2.4369 5.9890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044810765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:46 Heat of formation + Delta-G solvation = 82.368266 kcal Electronic energy + Delta-G solvation = -26332.849164 eV Core-core repulsion = 22700.031536 eV Total energy + Delta-G solvation = -3632.817628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78502 -40.01887 -37.49952 -35.66091 -34.63298 -32.83963 -32.03051 -31.15043 -29.52425 -28.30751 -27.04472 -24.60223 -23.68830 -23.17063 -22.93375 -21.24418 -20.62810 -20.07823 -19.30608 -17.98080 -17.18129 -16.59283 -16.05326 -15.82460 -15.56834 -14.91615 -14.62733 -14.53557 -14.24317 -13.96910 -13.81801 -13.64514 -13.38803 -13.19023 -12.96433 -12.66115 -12.27247 -12.20758 -12.03233 -11.81221 -11.66725 -11.37568 -11.05288 -10.98584 -10.90486 -10.88680 -10.53602 -10.28284 -9.93943 -9.91349 -9.78533 -9.24952 -8.99026 -8.62097 -8.25297 -7.86776 -7.05622 -5.84316 -3.14206 0.58012 1.33068 1.79279 1.87104 2.54295 2.58206 2.84863 3.24784 3.37232 3.42447 3.45223 4.34307 4.50353 4.52937 4.75130 4.77757 5.06492 5.12577 5.15791 5.16078 5.23629 5.37170 5.39992 5.52258 5.53173 5.68662 5.71176 5.77328 5.81205 5.93630 6.04300 6.16291 6.21285 6.27447 6.35022 6.37813 6.42497 6.50856 6.66007 6.78437 6.93409 7.04824 7.33550 7.61485 8.05719 8.33524 9.45003 10.01709 10.36346 11.38087 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.002966 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.604264 B = 9437.904859 C =10894.493203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.180 3.820 6 H 0.048 0.952 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.149 4.149 17 C 0.082 3.918 18 N -0.596 5.596 19 C 0.584 3.416 20 O -0.520 6.520 21 C 0.018 3.982 22 C -0.080 4.080 23 C -0.215 4.215 24 S 0.126 5.874 25 C -0.191 4.191 26 C -0.112 4.112 27 C 0.056 3.944 28 N -0.543 5.543 29 H 0.425 0.575 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 1.674 22.407 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.190 4.190 17 C -0.042 4.042 18 N -0.329 5.329 19 C 0.372 3.628 20 O -0.396 6.396 21 C -0.097 4.097 22 C -0.110 4.110 23 C -0.335 4.335 24 S 0.386 5.614 25 C -0.327 4.327 26 C -0.146 4.146 27 C -0.062 4.062 28 N -0.152 5.152 29 H 0.271 0.729 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.602 1.024 22.872 23.828 hybrid contribution 2.486 0.972 -1.400 3.014 sum -4.116 1.995 21.472 21.953 Atomic orbital electron populations 1.22215 0.92561 1.03882 1.00713 1.21386 0.95663 0.95005 0.83369 0.90814 1.22318 0.97499 1.01153 0.96527 1.20148 0.90987 0.94905 0.87049 0.93401 1.42431 1.13012 1.54296 1.26567 1.19256 0.89112 1.22349 1.06623 0.91147 1.24759 0.98191 0.99737 0.98129 1.69670 1.35315 1.33399 1.19430 0.86141 0.84420 0.77307 0.78425 1.20567 1.21837 1.21813 1.22676 1.01774 1.00197 0.94375 1.22433 0.80057 1.00806 1.00865 1.48166 1.07323 1.56902 1.20535 1.17063 0.86011 0.78439 0.81299 1.90923 1.14906 1.55882 1.77934 1.20482 0.84744 1.05303 0.99137 1.20354 0.99271 0.98445 0.92972 1.22680 0.98682 1.07925 1.04245 1.83897 1.09433 1.45784 1.22334 1.25211 0.99336 1.03830 1.04344 1.18909 0.99813 1.01422 0.94412 1.18451 0.95813 0.99025 0.92923 1.43053 1.12174 1.37923 1.22085 0.72916 0.91143 0.93491 0.91109 0.90335 0.91596 0.78184 0.93464 0.90483 0.91910 0.90969 0.89888 0.82765 0.81096 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.60 37.16 0.28 -1.59 16 2 C 0.15 2.05 3.49 -67.59 -0.24 1.81 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.18 4.84 -26.62 -0.13 -2.31 16 5 C 0.18 3.30 2.73 -67.90 -0.19 3.11 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -17.30 5.12 -53.39 -0.27 -17.58 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 12 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 16 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 17 C 0.08 1.00 5.55 -3.71 -0.02 0.98 16 18 N -0.60 -7.99 2.97 -166.82 -0.50 -8.49 16 19 C 0.58 8.32 7.51 -12.95 -0.10 8.22 16 20 O -0.52 -8.41 12.39 5.16 0.06 -8.34 16 21 C 0.02 0.23 6.43 -82.10 -0.53 -0.30 16 22 C -0.08 -1.02 10.70 -38.95 -0.42 -1.44 16 23 C -0.21 -2.56 7.26 -38.67 -0.28 -2.84 16 24 S 0.13 1.17 23.31 -107.50 -2.51 -1.33 16 25 C -0.19 -1.50 11.13 28.86 0.32 -1.18 16 26 C -0.11 -0.99 10.16 -40.85 -0.42 -1.40 16 27 C 0.06 0.62 7.67 -84.00 -0.64 -0.02 16 28 N -0.54 -5.89 4.93 -7.34 -0.04 -5.92 16 29 H 0.42 3.71 6.13 -40.82 -0.25 3.46 16 30 H 0.07 1.00 6.73 -51.93 -0.35 0.65 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.09 6.74 -51.92 -0.35 0.73 16 33 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.90 3.65 -51.96 -0.19 0.71 16 41 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -31.24 355.24 -10.59 -41.82 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.65 Total: 11.08 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.74 Total: -6.52 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -0.08 Total: -58.82 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.06 Total: -8.34 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.24 -10.59 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.193 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds