Wall clock time and date at job start Tue Mar 31 2020 18:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.69684 * 2 1 4 4 C 1.53190 * 109.58736 * 239.63939 * 2 1 3 5 5 C 1.53031 * 109.31169 * 185.57453 * 4 2 1 6 6 H 1.09001 * 109.46450 * 301.34748 * 5 4 2 7 7 N 1.46498 * 109.45893 * 181.38644 * 5 4 2 8 8 C 1.36948 * 120.00176 * 154.93448 * 7 5 4 9 9 H 1.07998 * 119.99577 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00203 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00060 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99940 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47297 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.46969 * 120.00190 * 12 10 8 15 15 H 1.48510 * 109.46995 * 239.99868 * 12 10 8 16 16 C 1.53039 * 109.53862 * 61.37020 * 5 4 2 17 17 C 1.53196 * 109.30917 * 298.62887 * 16 5 4 18 18 N 1.46926 * 108.77262 * 54.64214 * 17 16 5 19 19 C 1.34776 * 120.63751 * 126.11540 * 18 17 16 20 20 O 1.21728 * 120.00605 * 180.53858 * 19 18 17 21 21 C 1.46458 * 119.99296 * 0.53477 * 19 18 17 22 22 C 1.37467 * 125.80364 * 205.90983 * 21 19 18 23 23 C 1.40656 * 107.55559 * 179.97438 * 22 21 19 24 24 S 1.76022 * 142.39457 * 179.97438 * 23 22 21 25 25 C 1.75587 * 91.31026 * 180.02562 * 24 23 22 26 26 C 1.32770 * 110.47674 * 359.97438 * 25 24 23 27 27 C 1.38243 * 108.03722 * 0.02562 * 23 22 21 28 28 N 1.37914 * 125.80903 * 25.60450 * 21 19 18 29 29 H 0.96996 * 125.68407 * 359.97438 * 28 21 19 30 30 H 1.08994 * 109.47124 * 305.50502 * 1 2 3 31 31 H 1.08993 * 109.47183 * 65.50914 * 1 2 3 32 32 H 1.09008 * 109.46382 * 185.50883 * 1 2 3 33 33 H 1.09010 * 109.49711 * 65.62191 * 4 2 1 34 34 H 1.08998 * 109.50002 * 305.53326 * 4 2 1 35 35 H 0.96998 * 120.00492 * 334.93406 * 7 5 4 36 36 H 0.97003 * 120.00414 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.50110 * 178.68511 * 16 5 4 38 38 H 1.08998 * 109.50182 * 58.58240 * 16 5 4 39 39 H 1.08990 * 109.58828 * 294.84793 * 17 16 5 40 40 H 1.09005 * 109.69891 * 174.48933 * 17 16 5 41 41 H 1.08002 * 126.21756 * 0.02562 * 22 21 19 42 42 H 1.08001 * 124.76156 * 179.97438 * 25 24 23 43 43 H 1.08002 * 122.16622 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 1 4.0061 0.1474 -1.0993 7 7 4.0652 -1.5158 -2.3752 8 6 5.3494 -1.2977 -2.7981 9 1 5.9950 -0.6331 -2.2434 10 6 5.8208 -1.9301 -3.9403 11 7 5.0335 -2.7389 -4.6172 12 14 7.5722 -1.6320 -4.5175 13 1 8.2449 -0.6871 -3.5903 14 1 8.3127 -2.9190 -4.5369 15 1 7.5509 -1.0525 -5.8847 16 6 3.9570 -1.6656 0.0636 17 6 3.4651 -0.9467 1.3238 18 7 2.0226 -0.6995 1.1946 19 6 1.1668 -1.1113 2.1509 20 8 -0.0272 -0.9090 2.0274 21 6 1.6735 -1.8022 3.3386 22 6 0.9674 -2.6901 4.1150 23 6 1.8186 -3.1198 5.1490 24 16 1.8781 -4.1694 6.5609 25 6 3.5432 -3.7128 6.8802 26 6 3.9688 -2.8433 5.9716 27 6 3.0374 -2.4868 4.9910 28 7 2.9421 -1.6773 3.8651 29 1 3.6494 -1.1165 3.5099 30 1 -0.3633 0.5968 0.8365 31 1 -0.3633 0.4260 -0.9351 32 1 -0.3632 -1.0230 0.0987 33 1 1.7660 -0.1670 -2.1369 34 1 1.6030 -1.7254 -1.2912 35 1 3.4853 -2.1125 -2.8737 36 1 5.3630 -3.1812 -5.4152 37 1 5.0413 -1.7694 0.1039 38 1 3.4984 -2.6528 0.0055 39 1 3.9904 0.0022 1.4317 40 1 3.6521 -1.5694 2.1987 41 1 -0.0549 -3.0016 3.9589 42 1 4.1378 -4.0869 7.7006 43 1 4.9693 -2.4369 5.9890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044810765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:45 Heat of formation + Delta-G solvation = 63.685110 kcal Electronic energy + Delta-G solvation = -26333.659327 eV Core-core repulsion = 22700.031536 eV Total energy + Delta-G solvation = -3633.627791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.71060 -41.08804 -38.80263 -36.48163 -36.19554 -34.03799 -33.70482 -32.05534 -31.14827 -29.33259 -28.27228 -26.12447 -24.98366 -24.31587 -23.89632 -22.37151 -21.62834 -21.37739 -20.24088 -19.25153 -18.82051 -17.55185 -17.19049 -16.83492 -16.69964 -16.42605 -15.71355 -15.55729 -15.44676 -15.25890 -15.04448 -14.93149 -14.57797 -14.52491 -14.06677 -13.76743 -13.50573 -13.40766 -13.12639 -12.93192 -12.84477 -12.77082 -12.66572 -12.39555 -12.12937 -12.08435 -12.00765 -11.76022 -11.70748 -11.42000 -10.93935 -10.72661 -10.40183 -9.76618 -9.09559 -9.02457 -8.64286 -7.94284 -5.23515 -0.22382 0.58720 0.87670 1.16501 1.47830 1.48196 1.57929 1.62544 1.78546 1.84898 2.23292 2.55778 3.33649 3.38862 3.69109 3.72694 3.80250 3.91923 4.00082 4.00706 4.15452 4.25885 4.37978 4.44796 4.51520 4.56385 4.63170 4.66983 4.75980 4.80183 4.90887 4.95761 5.00975 5.08797 5.12662 5.22163 5.37242 5.42726 5.45316 5.52166 5.57963 5.62323 6.20827 6.27068 6.30364 6.95898 7.33197 8.08279 8.31100 9.29529 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.002966 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.604264 B = 9437.904859 C =10894.493203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.095 0.905 4 C -0.125 4.125 5 C 0.174 3.826 6 H 0.055 0.945 7 N -0.738 5.738 8 C -0.234 4.234 9 H 0.082 0.918 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.297 1.297 15 H -0.297 1.297 16 C -0.138 4.138 17 C 0.091 3.909 18 N -0.596 5.596 19 C 0.584 3.416 20 O -0.545 6.545 21 C -0.001 4.001 22 C -0.091 4.091 23 C -0.249 4.249 24 S 0.128 5.872 25 C -0.171 4.171 26 C -0.128 4.128 27 C 0.060 3.940 28 N -0.535 5.535 29 H 0.434 0.566 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.207 0.793 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 2.714 24.993 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.113 0.887 4 C -0.164 4.164 5 C 0.066 3.934 6 H 0.073 0.927 7 N -0.377 5.377 8 C -0.365 4.365 9 H 0.099 0.901 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.186 1.186 14 H -0.224 1.224 15 H -0.225 1.225 16 C -0.179 4.179 17 C -0.032 4.032 18 N -0.329 5.329 19 C 0.373 3.627 20 O -0.424 6.424 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.368 4.368 24 S 0.387 5.613 25 C -0.307 4.307 26 C -0.161 4.161 27 C -0.059 4.059 28 N -0.146 5.146 29 H 0.282 0.718 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.169 0.831 42 H 0.224 0.776 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.789 2.109 25.507 26.038 hybrid contribution 1.876 0.602 -2.055 2.847 sum -2.912 2.710 23.452 23.787 Atomic orbital electron populations 1.22076 0.92483 1.02607 1.01218 1.21354 0.95651 0.95591 0.82354 0.88692 1.22177 0.95851 1.00536 0.97850 1.20404 0.92257 0.94858 0.85887 0.92691 1.42671 1.12240 1.54474 1.28278 1.19673 0.90048 1.20905 1.05922 0.90051 1.25560 1.02006 1.00508 0.98974 1.69833 1.37144 1.35289 1.20033 0.85113 0.80137 0.77030 0.77726 1.18553 1.22442 1.22467 1.22434 1.01225 0.99090 0.95197 1.22452 0.79359 1.02146 0.99223 1.48180 1.07758 1.56706 1.20219 1.17223 0.85718 0.78030 0.81698 1.90908 1.15957 1.56850 1.78658 1.20214 0.85870 1.06229 0.99255 1.20493 0.99497 0.98647 0.93532 1.22948 0.99109 1.09430 1.05327 1.83913 1.11023 1.45231 1.21147 1.25708 0.98276 1.02259 1.04425 1.19215 1.00757 1.02114 0.93996 1.18915 0.96074 0.98118 0.92804 1.42916 1.11639 1.38027 1.22038 0.71817 0.91405 0.92245 0.93165 0.90641 0.93339 0.79900 0.94203 0.91078 0.94112 0.87950 0.88213 0.83077 0.77640 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 7.60 71.98 0.55 -2.88 16 2 C 0.15 4.04 3.49 44.98 0.16 4.20 16 3 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.13 -3.99 4.84 30.67 0.15 -3.84 16 5 C 0.17 6.28 2.73 45.02 0.12 6.40 16 6 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 7 N -0.74 -35.62 5.12 -322.83 -1.65 -37.27 16 8 C -0.23 -12.34 9.93 84.03 0.83 -11.51 16 9 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 10 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 11 N -0.97 -58.96 13.06 21.65 0.28 -58.67 16 12 Si 0.97 44.89 29.55 68.60 2.03 46.91 16 13 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 16 C -0.14 -4.32 5.66 30.67 0.17 -4.15 16 17 C 0.09 2.03 5.55 86.36 0.48 2.50 16 18 N -0.60 -15.25 2.97 -799.90 -2.38 -17.63 16 19 C 0.58 16.42 7.51 86.38 0.65 17.06 16 20 O -0.55 -17.81 12.39 -4.44 -0.05 -17.87 16 21 C 0.00 -0.04 6.43 40.15 0.26 0.22 16 22 C -0.09 -2.34 10.70 22.68 0.24 -2.09 16 23 C -0.25 -5.68 7.26 22.86 0.17 -5.52 16 24 S 0.13 2.16 23.31 -56.49 -1.32 0.84 16 25 C -0.17 -2.08 11.13 66.64 0.74 -1.33 16 26 C -0.13 -1.83 10.16 21.49 0.22 -1.61 16 27 C 0.06 1.21 7.67 38.40 0.29 1.51 16 28 N -0.54 -10.65 4.93 -177.13 -0.87 -11.53 16 29 H 0.43 6.44 6.13 -92.71 -0.57 5.87 16 30 H 0.07 1.89 6.73 -2.39 -0.02 1.88 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.57 6.74 -2.38 -0.02 1.55 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 1.93 3.65 -2.44 -0.01 1.92 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -68.87 355.24 1.30 -67.57 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.23 Total: 32.60 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.50 Total: -4.96 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -4.62 Total: -125.10 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.87 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.32 Total: 0.84 kcal Total: -68.87 1.30 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.253 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds