Wall clock time and date at job start Tue Mar 31 2020 18:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.58971 * 2 1 4 4 C 1.53192 * 109.58504 * 239.71299 * 2 1 3 5 5 C 1.53039 * 109.31570 * 294.85038 * 4 2 1 6 6 H 1.08997 * 109.46146 * 58.64073 * 5 4 2 7 7 N 1.46503 * 109.46097 * 178.61704 * 5 4 2 8 8 C 1.36934 * 119.99696 * 205.02605 * 7 5 4 9 9 H 1.07995 * 120.00333 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00120 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99549 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00383 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46799 * 90.00326 * 12 10 8 14 14 H 1.48500 * 109.47086 * 330.00597 * 12 10 8 15 15 H 1.48493 * 109.47135 * 210.00429 * 12 10 8 16 16 C 1.53043 * 109.52650 * 298.62683 * 5 4 2 17 17 C 1.53191 * 109.31027 * 61.38442 * 16 5 4 18 18 N 1.46927 * 109.58554 * 120.42700 * 2 1 3 19 19 C 1.34775 * 120.63216 * 246.15239 * 18 2 1 20 20 O 1.21734 * 119.99556 * 353.20660 * 19 18 2 21 21 C 1.46458 * 120.00182 * 173.20369 * 19 18 2 22 22 C 1.37462 * 125.80077 * 155.64832 * 21 19 18 23 23 C 1.40659 * 107.54986 * 179.88352 * 22 21 19 24 24 S 1.76026 * 142.39394 * 180.02562 * 23 22 21 25 25 C 1.75591 * 91.30916 * 180.35999 * 24 23 22 26 26 C 1.32773 * 110.47685 * 359.97438 * 25 24 23 27 27 C 1.38248 * 108.03770 * 0.37959 * 23 22 21 28 28 N 1.37909 * 125.80807 * 335.95737 * 21 19 18 29 29 H 0.97008 * 125.67960 * 359.95513 * 28 21 19 30 30 H 1.09004 * 109.47483 * 180.28545 * 1 2 3 31 31 H 1.09003 * 109.47485 * 300.28263 * 1 2 3 32 32 H 1.09002 * 109.47415 * 60.28529 * 1 2 3 33 33 H 1.09004 * 109.49815 * 174.89879 * 4 2 1 34 34 H 1.09005 * 109.49610 * 54.80108 * 4 2 1 35 35 H 0.96996 * 120.00048 * 25.01859 * 7 5 4 36 36 H 0.96994 * 120.00164 * 359.97438 * 11 10 8 37 37 H 1.08995 * 109.49725 * 181.32276 * 16 5 4 38 38 H 1.09001 * 109.49964 * 301.42205 * 16 5 4 39 39 H 1.09007 * 109.58276 * 185.56645 * 17 16 5 40 40 H 1.09002 * 109.71532 * 65.20519 * 17 16 5 41 41 H 1.07994 * 126.22567 * 359.97438 * 22 21 19 42 42 H 1.08008 * 124.76302 * 180.02562 * 25 24 23 43 43 H 1.07995 * 122.15946 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 -1.2463 5 6 1.6413 -2.2027 -1.1729 6 1 0.5564 -2.2802 -1.1019 7 7 2.1022 -2.8949 -2.3790 8 6 1.4645 -4.0302 -2.8027 9 1 0.6221 -4.4155 -2.2476 10 6 1.9008 -4.6859 -3.9457 11 7 2.9279 -4.2165 -4.6220 12 14 1.0314 -6.2350 -4.5234 13 1 -0.0668 -5.8686 -5.4534 14 1 0.4688 -6.9531 -3.3517 15 1 2.0009 -7.1146 -5.2244 16 6 2.2802 -2.8463 0.0599 17 6 1.7691 -2.1427 1.3210 18 7 2.0225 -0.7010 1.1936 19 6 2.6944 -0.0345 2.1531 20 8 3.0065 1.1295 1.9808 21 6 3.0490 -0.7105 3.4030 22 6 4.0849 -0.3653 4.2381 23 6 4.0743 -1.2633 5.3207 24 16 4.9150 -1.6534 6.8172 25 6 3.8307 -3.0004 7.1224 26 6 2.9317 -3.1024 6.1506 27 6 3.0343 -2.1535 5.1283 28 7 2.4041 -1.8053 3.9393 29 1 1.6381 -2.2568 3.5515 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 3.1296 -0.6489 -1.2921 34 1 1.6074 -0.2758 -2.1372 35 1 2.8590 -2.5490 -2.8774 36 1 3.3796 -3.4124 -4.3218 37 1 2.0126 -3.9022 0.0989 38 1 3.3641 -2.7471 0.0017 39 1 2.2944 -2.5303 2.1940 40 1 0.6988 -2.3172 1.4313 41 1 4.7796 0.4483 4.0906 42 1 3.8866 -3.6537 7.9806 43 1 2.1708 -3.8687 6.1496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044810766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:50 Heat of formation + Delta-G solvation = 62.922103 kcal Electronic energy + Delta-G solvation = -26341.741628 eV Core-core repulsion = 22708.080751 eV Total energy + Delta-G solvation = -3633.660877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.78120 -39.95894 -37.75093 -35.63505 -34.88745 -32.79225 -32.05015 -31.12720 -29.41495 -28.31927 -27.35546 -24.46756 -23.59600 -23.34852 -22.94471 -21.50501 -20.87523 -19.90211 -19.06906 -18.02731 -17.35521 -16.90054 -16.09107 -15.72485 -15.58614 -14.85425 -14.77305 -14.44295 -14.34915 -14.17178 -13.83159 -13.71095 -13.54474 -13.21897 -13.10993 -12.92986 -12.68098 -12.16647 -12.02826 -11.97114 -11.64758 -11.39905 -11.08730 -11.03940 -10.89499 -10.64251 -10.51700 -10.15591 -10.07145 -9.98002 -9.94639 -9.24028 -8.98484 -8.75795 -8.30076 -7.90867 -7.12423 -6.16894 -3.17940 0.53327 1.29350 1.73902 1.83292 2.50345 2.53845 2.81124 3.18551 3.46016 3.50609 3.64688 4.30457 4.49192 4.59320 4.72022 4.74041 4.95275 5.05608 5.07982 5.09652 5.19280 5.28705 5.33935 5.48582 5.51510 5.56027 5.63461 5.68342 5.73564 5.74832 5.88095 5.97796 6.10995 6.15549 6.21720 6.27386 6.30546 6.36977 6.49404 6.70393 6.85900 7.01521 7.26779 7.72379 7.96308 8.68588 9.14763 10.01216 10.16099 11.31300 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.002877 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.967212 B = 9730.162470 C =10866.313120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.100 0.900 4 C -0.135 4.135 5 C 0.185 3.815 6 H 0.053 0.947 7 N -0.735 5.735 8 C -0.334 4.334 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.942 5.942 12 Si 1.082 2.918 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.148 4.148 17 C 0.086 3.914 18 N -0.597 5.597 19 C 0.587 3.413 20 O -0.528 6.528 21 C 0.018 3.982 22 C -0.078 4.078 23 C -0.216 4.216 24 S 0.128 5.872 25 C -0.190 4.190 26 C -0.113 4.113 27 C 0.059 3.941 28 N -0.541 5.541 29 H 0.424 0.576 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 5.094 23.092 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.118 0.882 4 C -0.174 4.174 5 C 0.075 3.925 6 H 0.071 0.929 7 N -0.376 5.376 8 C -0.465 4.465 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.587 5.587 12 Si 0.913 3.087 13 H -0.223 1.223 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.189 4.189 17 C -0.037 4.037 18 N -0.330 5.330 19 C 0.374 3.626 20 O -0.404 6.404 21 C -0.097 4.097 22 C -0.108 4.108 23 C -0.336 4.336 24 S 0.387 5.613 25 C -0.326 4.326 26 C -0.146 4.146 27 C -0.059 4.059 28 N -0.149 5.149 29 H 0.268 0.732 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.200 0.800 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.173 0.827 42 H 0.190 0.810 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.659 4.946 22.564 23.109 hybrid contribution -1.359 0.195 0.162 1.382 sum -2.017 5.141 22.726 23.387 Atomic orbital electron populations 1.22161 0.94749 1.02829 1.02208 1.21237 0.94053 0.97204 0.83474 0.88210 1.22242 1.01459 0.97216 0.96516 1.20118 0.96829 0.88942 0.86628 0.92928 1.42442 1.37788 1.30162 1.27234 1.20027 1.12872 1.03256 1.10307 0.91770 1.25772 0.99363 1.04389 0.94633 1.70845 1.22061 1.24382 1.41428 0.83211 0.75025 0.75147 0.75365 1.22276 1.22180 1.21360 1.22643 1.01340 1.00519 0.94419 1.22292 1.00894 0.79794 1.00738 1.48164 1.54942 1.09296 1.20570 1.17020 0.78028 0.85768 0.81753 1.90850 1.53858 1.15913 1.79814 1.20285 0.99204 0.92569 0.97621 1.20376 0.98834 1.00096 0.91505 1.22683 1.03736 1.04399 1.02826 1.83912 1.33525 1.27752 1.16074 1.25226 1.00240 1.03449 1.03684 1.18907 1.02510 1.00121 0.93087 1.18426 0.96874 0.99695 0.90938 1.42779 1.28285 1.25744 1.18088 0.73250 0.91675 0.92749 0.90979 0.91768 0.90401 0.79986 0.93265 0.90466 0.92077 0.90053 0.91109 0.82709 0.81041 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.02 37.15 0.34 -1.59 16 2 C 0.14 1.98 3.21 -67.60 -0.22 1.76 16 3 H 0.10 1.45 7.00 -51.93 -0.36 1.08 16 4 C -0.14 -2.17 5.02 -26.61 -0.13 -2.30 16 5 C 0.19 3.41 2.52 -67.89 -0.17 3.24 16 6 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 7 N -0.73 -17.57 5.12 -53.39 -0.27 -17.84 16 8 C -0.33 -8.98 9.93 -15.06 -0.15 -9.13 16 9 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 10 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 11 N -0.94 -28.67 13.70 55.49 0.76 -27.91 16 12 Si 1.08 25.33 29.92 -169.99 -5.09 20.24 16 13 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.09 1.07 4.86 -3.71 -0.02 1.05 16 18 N -0.60 -8.09 2.68 -166.83 -0.45 -8.54 16 19 C 0.59 8.63 7.61 -12.95 -0.10 8.53 16 20 O -0.53 -9.20 16.38 5.16 0.08 -9.11 16 21 C 0.02 0.23 6.34 -82.10 -0.52 -0.29 16 22 C -0.08 -1.00 10.69 -38.95 -0.42 -1.41 16 23 C -0.22 -2.56 7.26 -38.66 -0.28 -2.84 16 24 S 0.13 1.17 23.31 -107.50 -2.51 -1.33 16 25 C -0.19 -1.46 11.13 28.86 0.32 -1.13 16 26 C -0.11 -0.97 10.16 -40.85 -0.42 -1.39 16 27 C 0.06 0.65 7.67 -84.01 -0.64 0.00 16 28 N -0.54 -5.85 4.87 -7.34 -0.04 -5.88 16 29 H 0.42 3.69 6.39 -40.82 -0.26 3.43 16 30 H 0.06 0.79 5.72 -51.93 -0.30 0.49 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.37 9.25 6.63 -40.82 -0.27 8.97 16 36 H 0.26 7.69 6.77 -40.82 -0.28 7.41 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.90 4.22 -51.93 -0.22 0.68 16 40 H 0.07 0.75 7.49 -51.93 -0.39 0.36 16 41 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -32.76 355.41 -10.23 -42.98 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.42 Total: 11.45 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.66 Total: -9.41 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.00 Total: -60.17 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.24 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.76 -10.23 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.907 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds