Wall clock time and date at job start Tue Mar 31 2020 18:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.58971 * 2 1 4 4 C 1.53192 * 109.58504 * 239.71299 * 2 1 3 5 5 C 1.53039 * 109.31570 * 294.85038 * 4 2 1 6 6 H 1.08997 * 109.46146 * 58.64073 * 5 4 2 7 7 N 1.46503 * 109.46097 * 178.61704 * 5 4 2 8 8 C 1.36934 * 119.99696 * 205.02605 * 7 5 4 9 9 H 1.07995 * 120.00333 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00120 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99549 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00383 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46799 * 90.00326 * 12 10 8 14 14 H 1.48500 * 109.47086 * 330.00597 * 12 10 8 15 15 H 1.48493 * 109.47135 * 210.00429 * 12 10 8 16 16 C 1.53043 * 109.52650 * 298.62683 * 5 4 2 17 17 C 1.53191 * 109.31027 * 61.38442 * 16 5 4 18 18 N 1.46927 * 109.58554 * 120.42700 * 2 1 3 19 19 C 1.34775 * 120.63216 * 246.15239 * 18 2 1 20 20 O 1.21734 * 119.99556 * 353.20660 * 19 18 2 21 21 C 1.46458 * 120.00182 * 173.20369 * 19 18 2 22 22 C 1.37462 * 125.80077 * 155.64832 * 21 19 18 23 23 C 1.40659 * 107.54986 * 179.88352 * 22 21 19 24 24 S 1.76026 * 142.39394 * 180.02562 * 23 22 21 25 25 C 1.75591 * 91.30916 * 180.35999 * 24 23 22 26 26 C 1.32773 * 110.47685 * 359.97438 * 25 24 23 27 27 C 1.38248 * 108.03770 * 0.37959 * 23 22 21 28 28 N 1.37909 * 125.80807 * 335.95737 * 21 19 18 29 29 H 0.97008 * 125.67960 * 359.95513 * 28 21 19 30 30 H 1.09004 * 109.47483 * 180.28545 * 1 2 3 31 31 H 1.09003 * 109.47485 * 300.28263 * 1 2 3 32 32 H 1.09002 * 109.47415 * 60.28529 * 1 2 3 33 33 H 1.09004 * 109.49815 * 174.89879 * 4 2 1 34 34 H 1.09005 * 109.49610 * 54.80108 * 4 2 1 35 35 H 0.96996 * 120.00048 * 25.01859 * 7 5 4 36 36 H 0.96994 * 120.00164 * 359.97438 * 11 10 8 37 37 H 1.08995 * 109.49725 * 181.32276 * 16 5 4 38 38 H 1.09001 * 109.49964 * 301.42205 * 16 5 4 39 39 H 1.09007 * 109.58276 * 185.56645 * 17 16 5 40 40 H 1.09002 * 109.71532 * 65.20519 * 17 16 5 41 41 H 1.07994 * 126.22567 * 359.97438 * 22 21 19 42 42 H 1.08008 * 124.76302 * 180.02562 * 25 24 23 43 43 H 1.07995 * 122.15946 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 -1.2463 5 6 1.6413 -2.2027 -1.1729 6 1 0.5564 -2.2802 -1.1019 7 7 2.1022 -2.8949 -2.3790 8 6 1.4645 -4.0302 -2.8027 9 1 0.6221 -4.4155 -2.2476 10 6 1.9008 -4.6859 -3.9457 11 7 2.9279 -4.2165 -4.6220 12 14 1.0314 -6.2350 -4.5234 13 1 -0.0668 -5.8686 -5.4534 14 1 0.4688 -6.9531 -3.3517 15 1 2.0009 -7.1146 -5.2244 16 6 2.2802 -2.8463 0.0599 17 6 1.7691 -2.1427 1.3210 18 7 2.0225 -0.7010 1.1936 19 6 2.6944 -0.0345 2.1531 20 8 3.0065 1.1295 1.9808 21 6 3.0490 -0.7105 3.4030 22 6 4.0849 -0.3653 4.2381 23 6 4.0743 -1.2633 5.3207 24 16 4.9150 -1.6534 6.8172 25 6 3.8307 -3.0004 7.1224 26 6 2.9317 -3.1024 6.1506 27 6 3.0343 -2.1535 5.1283 28 7 2.4041 -1.8053 3.9393 29 1 1.6381 -2.2568 3.5515 30 1 -0.3634 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 3.1296 -0.6489 -1.2921 34 1 1.6074 -0.2758 -2.1372 35 1 2.8590 -2.5490 -2.8774 36 1 3.3796 -3.4124 -4.3218 37 1 2.0126 -3.9022 0.0989 38 1 3.3641 -2.7471 0.0017 39 1 2.2944 -2.5303 2.1940 40 1 0.6988 -2.3172 1.4313 41 1 4.7796 0.4483 4.0906 42 1 3.8866 -3.6537 7.9806 43 1 2.1708 -3.8687 6.1496 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044810766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:49 Heat of formation + Delta-G solvation = 42.809034 kcal Electronic energy + Delta-G solvation = -26342.613797 eV Core-core repulsion = 22708.080751 eV Total energy + Delta-G solvation = -3634.533046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.70926 -41.07074 -39.06436 -36.65699 -36.32826 -34.13491 -33.55258 -32.03636 -31.01956 -29.28628 -28.61941 -25.92783 -25.04560 -24.50380 -23.89737 -22.85075 -21.79775 -20.93292 -20.08008 -19.43738 -19.03109 -17.95667 -17.17451 -16.68398 -16.51877 -16.45971 -16.13675 -15.61632 -15.49663 -15.28107 -15.11880 -15.04321 -14.63901 -14.56138 -14.16644 -13.94307 -13.89674 -13.40802 -13.05343 -12.86426 -12.80390 -12.67187 -12.51245 -12.43291 -12.18907 -12.03365 -11.87692 -11.76350 -11.55050 -11.32426 -11.09576 -10.92019 -10.77011 -9.93744 -9.16083 -9.11276 -8.67434 -8.37902 -5.32916 -0.27628 0.55764 0.81143 1.14108 1.56144 1.58535 1.68991 1.75547 1.79330 1.82373 2.15246 2.71439 3.26602 3.40044 3.56705 3.67395 3.76990 3.79575 3.91589 3.96695 4.08770 4.13420 4.32737 4.35829 4.40640 4.45825 4.52914 4.56856 4.64611 4.73398 4.86996 4.89942 4.92129 4.93332 5.06746 5.13707 5.19752 5.35537 5.38834 5.44921 5.55595 5.60956 6.12729 6.25942 6.49055 6.82767 7.08504 7.98061 8.11729 9.13798 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015083 B = 0.002877 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.967212 B = 9730.162470 C =10866.313120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.093 0.907 4 C -0.126 4.126 5 C 0.181 3.819 6 H 0.059 0.941 7 N -0.750 5.750 8 C -0.323 4.323 9 H 0.072 0.928 10 C -0.108 4.108 11 N -0.980 5.980 12 Si 1.128 2.872 13 H -0.286 1.286 14 H -0.269 1.269 15 H -0.298 1.298 16 C -0.138 4.138 17 C 0.096 3.904 18 N -0.595 5.595 19 C 0.588 3.412 20 O -0.563 6.563 21 C -0.003 4.003 22 C -0.088 4.088 23 C -0.250 4.250 24 S 0.130 5.870 25 C -0.168 4.168 26 C -0.129 4.129 27 C 0.065 3.935 28 N -0.533 5.533 29 H 0.433 0.567 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.356 0.644 36 H 0.243 0.757 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.151 0.849 42 H 0.208 0.792 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 3.603 25.879 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.111 0.889 4 C -0.165 4.165 5 C 0.073 3.927 6 H 0.077 0.923 7 N -0.391 5.391 8 C -0.454 4.454 9 H 0.090 0.910 10 C -0.299 4.299 11 N -0.628 5.628 12 Si 0.953 3.047 13 H -0.213 1.213 14 H -0.194 1.194 15 H -0.225 1.225 16 C -0.179 4.179 17 C -0.027 4.027 18 N -0.327 5.327 19 C 0.377 3.623 20 O -0.442 6.442 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.369 4.369 24 S 0.389 5.611 25 C -0.304 4.304 26 C -0.161 4.161 27 C -0.054 4.054 28 N -0.142 5.142 29 H 0.279 0.721 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.187 0.813 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.169 0.831 42 H 0.225 0.775 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.548 3.468 25.399 25.761 hybrid contribution -0.724 0.688 -0.544 1.137 sum -3.272 4.155 24.855 25.411 Atomic orbital electron populations 1.22105 0.92612 1.03207 1.03265 1.21169 0.95574 0.96413 0.82404 0.88886 1.22111 1.00390 0.96047 0.97908 1.20355 0.97084 0.89825 0.85424 0.92313 1.42702 1.37435 1.30011 1.28952 1.20386 1.12193 1.03343 1.09518 0.90956 1.27163 0.99788 1.07335 0.95601 1.70962 1.24070 1.24876 1.42903 0.82613 0.74095 0.72060 0.75892 1.21305 1.19379 1.22492 1.22419 0.99868 1.00288 0.95371 1.22302 1.02751 0.78555 0.99060 1.48178 1.54593 1.09675 1.20217 1.17223 0.77326 0.85423 0.82323 1.90823 1.55251 1.17478 1.80656 1.19962 1.00326 0.93985 0.97443 1.20512 0.98867 1.00315 0.92155 1.22943 1.05191 1.04903 1.03904 1.83937 1.33815 1.28625 1.14673 1.25733 0.98369 1.02267 1.04038 1.19213 1.03846 1.00555 0.92535 1.18899 0.96047 0.99611 0.90868 1.42636 1.28396 1.25093 1.18088 0.72124 0.91505 0.91473 0.90231 0.93503 0.90629 0.81304 0.94674 0.91261 0.94231 0.88364 0.88094 0.83110 0.77521 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.02 71.98 0.65 -2.70 16 2 C 0.15 3.98 3.21 44.97 0.14 4.13 16 3 H 0.09 2.70 7.00 -2.39 -0.02 2.68 16 4 C -0.13 -4.07 5.02 30.67 0.15 -3.91 16 5 C 0.18 6.61 2.52 45.02 0.11 6.73 16 6 H 0.06 2.10 6.44 -2.39 -0.02 2.08 16 7 N -0.75 -36.39 5.12 -322.81 -1.65 -38.05 16 8 C -0.32 -17.33 9.93 84.03 0.83 -16.50 16 9 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 10 C -0.11 -6.14 5.50 84.86 0.47 -5.67 16 11 N -0.98 -61.12 13.70 21.65 0.30 -60.82 16 12 Si 1.13 50.72 29.92 68.60 2.05 52.77 16 13 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 16 C -0.14 -4.44 5.66 30.67 0.17 -4.26 16 17 C 0.10 2.20 4.86 86.36 0.42 2.62 16 18 N -0.59 -15.59 2.68 -799.92 -2.14 -17.74 16 19 C 0.59 17.22 7.61 86.38 0.66 17.87 16 20 O -0.56 -20.04 16.38 -4.46 -0.07 -20.11 16 21 C 0.00 -0.08 6.34 40.15 0.25 0.18 16 22 C -0.09 -2.27 10.69 22.68 0.24 -2.02 16 23 C -0.25 -5.64 7.26 22.86 0.17 -5.47 16 24 S 0.13 2.14 23.31 -56.49 -1.32 0.82 16 25 C -0.17 -1.94 11.13 66.64 0.74 -1.20 16 26 C -0.13 -1.76 10.16 21.49 0.22 -1.54 16 27 C 0.07 1.29 7.67 38.40 0.29 1.59 16 28 N -0.53 -10.53 4.87 -177.15 -0.86 -11.39 16 29 H 0.43 6.37 6.39 -92.70 -0.59 5.77 16 30 H 0.07 1.44 5.72 -2.38 -0.01 1.42 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.36 18.63 6.63 -92.71 -0.61 18.02 16 36 H 0.24 15.19 6.77 -92.71 -0.63 14.56 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.97 4.22 -2.38 -0.01 1.96 16 40 H 0.10 1.78 7.49 -2.39 -0.02 1.76 16 41 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -72.70 355.41 1.83 -70.87 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.00 Total: 33.81 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 5.53 Total: -10.17 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -4.36 Total: -127.99 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.07 Total: -20.11 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -72.70 1.83 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.680 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds