Wall clock time and date at job start Tue Mar 31 2020 18:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.70644 * 2 1 4 4 C 1.53197 * 109.58071 * 120.35644 * 2 1 3 5 5 C 1.53047 * 109.30929 * 174.41894 * 4 2 1 6 6 H 1.09003 * 109.45835 * 58.65621 * 5 4 2 7 7 N 1.46499 * 109.45890 * 178.61159 * 5 4 2 8 8 C 1.36933 * 120.00088 * 205.00244 * 7 5 4 9 9 H 1.08000 * 119.99887 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00120 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99885 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00175 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47069 * 90.00187 * 12 10 8 14 14 H 1.48500 * 109.47344 * 210.00421 * 12 10 8 15 15 H 1.48500 * 109.46889 * 330.00551 * 12 10 8 16 16 C 1.53076 * 109.65910 * 298.69862 * 5 4 2 17 17 C 1.53197 * 109.29434 * 61.15362 * 16 5 4 18 18 N 1.46921 * 108.89021 * 305.57840 * 17 16 5 19 19 C 1.34781 * 120.62793 * 233.51117 * 18 17 16 20 20 O 1.21729 * 119.99834 * 173.05216 * 19 18 17 21 21 C 1.46453 * 119.99888 * 353.06136 * 19 18 17 22 22 C 1.37470 * 125.80735 * 156.31540 * 21 19 18 23 23 C 1.40658 * 107.55314 * 179.87461 * 22 21 19 24 24 S 1.76021 * 142.39046 * 180.02562 * 23 22 21 25 25 C 1.75588 * 91.31026 * 180.36935 * 24 23 22 26 26 C 1.32770 * 110.47455 * 359.97438 * 25 24 23 27 27 C 1.38243 * 108.03700 * 0.38504 * 23 22 21 28 28 N 1.37919 * 125.80796 * 336.61800 * 21 19 18 29 29 H 0.96999 * 125.68117 * 0.02562 * 28 21 19 30 30 H 1.08996 * 109.47479 * 176.94695 * 1 2 3 31 31 H 1.08996 * 109.47032 * 296.95475 * 1 2 3 32 32 H 1.09004 * 109.47133 * 56.94971 * 1 2 3 33 33 H 1.08993 * 109.50015 * 294.36781 * 4 2 1 34 34 H 1.09000 * 109.49989 * 54.43775 * 4 2 1 35 35 H 0.96998 * 120.00144 * 25.00091 * 7 5 4 36 36 H 0.96997 * 120.00091 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.39092 * 301.27629 * 16 5 4 38 38 H 1.08998 * 109.61944 * 181.16712 * 16 5 4 39 39 H 1.08996 * 109.58553 * 185.71907 * 17 16 5 40 40 H 1.09001 * 109.58612 * 65.43573 * 17 16 5 41 41 H 1.07996 * 126.21550 * 359.97438 * 22 21 19 42 42 H 1.08003 * 124.76487 * 180.02562 * 25 24 23 43 43 H 1.08007 * 122.16246 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7294 1.2455 5 6 3.5674 -0.8482 1.1702 6 1 4.0061 0.1472 1.0994 7 7 4.0650 -1.5159 2.3755 8 6 5.3495 -1.2989 2.7976 9 1 5.9958 -0.6359 2.2417 10 6 5.8212 -1.9321 3.9393 11 7 7.0556 -1.7231 4.3453 12 14 4.7035 -3.0795 4.9004 13 1 4.8448 -4.4618 4.3765 14 1 5.0831 -3.0529 6.3358 15 1 3.2940 -2.6359 4.7529 16 6 3.9600 -1.6644 -0.0638 17 6 3.4650 -0.9471 -1.3237 18 7 2.0225 -0.6997 -1.1944 19 6 1.1674 -1.1062 -2.1536 20 8 -0.0334 -1.0099 -1.9791 21 6 1.6830 -1.6640 -3.4057 22 6 1.0039 -2.5115 -4.2486 23 6 1.8534 -2.8041 -5.3308 24 16 1.9336 -3.7177 -6.8332 25 6 3.5729 -3.1631 -7.1300 26 6 3.9762 -2.3613 -6.1516 27 6 3.0473 -2.1366 -5.1304 28 7 2.9346 -1.4331 -3.9370 29 1 3.6220 -0.8734 -3.5431 30 1 -0.3634 -1.0261 -0.0547 31 1 -0.3633 0.4658 0.9160 32 1 -0.3633 0.5605 -0.8614 33 1 1.7659 -0.1669 2.1368 34 1 1.6023 -1.7252 1.2917 35 1 3.4846 -2.1117 2.8745 36 1 7.3851 -2.1652 5.1433 37 1 3.5035 -2.6523 -0.0045 38 1 5.0445 -1.7661 -0.1055 39 1 3.6517 -1.5719 -2.1970 40 1 3.9901 0.0017 -1.4342 41 1 0.0000 -2.8835 -4.1063 42 1 4.1692 -3.4353 -7.9884 43 1 4.9582 -1.9116 -6.1447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044810767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:54 Heat of formation + Delta-G solvation = 81.497604 kcal Electronic energy + Delta-G solvation = -26361.435478 eV Core-core repulsion = 22728.580095 eV Total energy + Delta-G solvation = -3632.855383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80148 -40.08697 -37.59704 -35.67882 -34.78889 -32.89044 -32.06296 -31.17112 -30.00776 -28.42927 -27.17619 -24.68577 -23.64522 -23.17082 -22.78336 -21.20794 -20.62895 -20.22026 -19.37820 -18.08289 -17.59126 -16.60937 -16.08805 -15.81309 -15.66221 -14.96874 -14.68195 -14.56426 -14.31655 -14.13867 -13.94370 -13.65870 -13.49675 -13.12179 -12.94300 -12.59065 -12.47921 -12.30011 -12.07621 -11.97238 -11.91478 -11.46815 -11.10585 -11.08264 -11.00943 -10.99116 -10.61475 -10.36244 -10.01001 -9.94273 -9.67367 -9.32642 -9.01320 -8.68266 -8.29298 -7.90306 -7.37201 -5.85259 -3.21653 0.54142 1.30032 1.74370 1.83889 2.51255 2.54937 2.80930 3.19389 3.32541 3.36025 3.40925 4.31249 4.50220 4.52268 4.72007 4.73459 4.88633 5.02693 5.08670 5.10622 5.19253 5.28383 5.33619 5.46936 5.49168 5.59006 5.65664 5.72671 5.74391 5.82807 5.92171 5.94693 6.12513 6.21392 6.24051 6.26563 6.31742 6.45373 6.57742 6.68255 6.82367 7.02374 7.27662 7.89214 7.99830 8.33698 9.11503 9.84419 10.03856 11.32794 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002964 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.685652 B = 9445.471546 C =10534.414804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.057 0.943 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.090 0.910 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.149 4.149 17 C 0.086 3.914 18 N -0.600 5.600 19 C 0.585 3.415 20 O -0.519 6.519 21 C 0.016 3.984 22 C -0.079 4.079 23 C -0.216 4.216 24 S 0.126 5.874 25 C -0.190 4.190 26 C -0.113 4.113 27 C 0.059 3.941 28 N -0.542 5.542 29 H 0.424 0.576 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.155 0.845 42 H 0.172 0.828 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 0.359 -22.461 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.190 4.190 17 C -0.038 4.038 18 N -0.333 5.333 19 C 0.373 3.627 20 O -0.395 6.395 21 C -0.099 4.099 22 C -0.109 4.109 23 C -0.337 4.337 24 S 0.385 5.615 25 C -0.326 4.326 26 C -0.146 4.146 27 C -0.060 4.060 28 N -0.150 5.150 29 H 0.268 0.732 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.047 -0.301 -22.963 25.483 hybrid contribution 0.990 0.227 1.725 2.002 sum -10.056 -0.074 -21.238 23.499 Atomic orbital electron populations 1.22228 0.92511 1.03902 1.00783 1.21357 0.95678 0.95018 0.83293 0.90612 1.22354 0.97411 1.01169 0.96923 1.20131 0.90840 0.95300 0.86312 0.92550 1.42778 1.13108 1.55101 1.27880 1.19041 0.87443 1.23622 1.07581 0.89207 1.24673 0.96088 1.00041 0.98154 1.69694 1.15097 1.47011 1.26165 0.86561 0.80536 0.81546 0.79939 1.21081 1.21687 1.20267 1.22632 1.02192 0.99941 0.94212 1.22316 0.79869 1.00829 1.00750 1.48149 1.07428 1.57231 1.20460 1.17061 0.86067 0.77906 0.81648 1.90922 1.14470 1.54873 1.79277 1.20466 0.85675 1.06000 0.97754 1.20363 0.99430 0.99667 0.91463 1.22683 0.99252 1.08996 1.02722 1.83907 1.11366 1.50346 1.15841 1.25221 0.99677 1.04076 1.03640 1.18921 0.99966 1.02687 0.93023 1.18432 0.96221 1.00480 0.90842 1.42841 1.13698 1.40609 1.17821 0.73182 0.90859 0.93521 0.91273 0.90289 0.91677 0.80560 0.92976 0.92004 0.89932 0.89907 0.90912 0.82773 0.81060 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 7.59 37.16 0.28 -1.50 16 2 C 0.15 1.94 3.49 -67.60 -0.24 1.71 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.09 4.84 -26.61 -0.13 -2.22 16 5 C 0.18 3.22 2.73 -67.87 -0.19 3.04 16 6 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.75 -16.74 4.93 -53.36 -0.26 -17.01 16 8 C -0.25 -6.65 10.41 -15.06 -0.16 -6.81 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 11 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 12 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 16 C -0.15 -2.29 5.67 -26.59 -0.15 -2.44 16 17 C 0.09 1.00 5.27 -3.71 -0.02 0.98 16 18 N -0.60 -7.64 2.97 -166.83 -0.50 -8.14 16 19 C 0.59 7.99 7.53 -12.95 -0.10 7.90 16 20 O -0.52 -8.11 12.35 5.16 0.06 -8.04 16 21 C 0.02 0.19 6.36 -82.10 -0.52 -0.33 16 22 C -0.08 -0.97 10.68 -38.95 -0.42 -1.38 16 23 C -0.22 -2.49 7.26 -38.67 -0.28 -2.77 16 24 S 0.13 1.13 23.31 -107.50 -2.51 -1.37 16 25 C -0.19 -1.44 11.13 28.86 0.32 -1.12 16 26 C -0.11 -0.96 10.16 -40.85 -0.42 -1.37 16 27 C 0.06 0.63 7.67 -84.00 -0.64 -0.02 16 28 N -0.54 -5.64 4.88 -7.34 -0.04 -5.68 16 29 H 0.42 3.55 6.33 -40.82 -0.26 3.29 16 30 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.94 6.75 -51.93 -0.35 0.59 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 0.87 4.19 -51.93 -0.22 0.65 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -32.03 352.46 -10.26 -42.29 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.65 Total: 9.69 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.75 Total: -6.24 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.02 Total: -58.63 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.06 Total: -8.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.03 -10.26 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.789 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds