Wall clock time and date at job start Tue Mar 31 2020 18:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.70644 * 2 1 4 4 C 1.53197 * 109.58071 * 120.35644 * 2 1 3 5 5 C 1.53047 * 109.30929 * 174.41894 * 4 2 1 6 6 H 1.09003 * 109.45835 * 58.65621 * 5 4 2 7 7 N 1.46499 * 109.45890 * 178.61159 * 5 4 2 8 8 C 1.36933 * 120.00088 * 205.00244 * 7 5 4 9 9 H 1.08000 * 119.99887 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00120 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99885 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00175 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47069 * 90.00187 * 12 10 8 14 14 H 1.48500 * 109.47344 * 210.00421 * 12 10 8 15 15 H 1.48500 * 109.46889 * 330.00551 * 12 10 8 16 16 C 1.53076 * 109.65910 * 298.69862 * 5 4 2 17 17 C 1.53197 * 109.29434 * 61.15362 * 16 5 4 18 18 N 1.46921 * 108.89021 * 305.57840 * 17 16 5 19 19 C 1.34781 * 120.62793 * 233.51117 * 18 17 16 20 20 O 1.21729 * 119.99834 * 173.05216 * 19 18 17 21 21 C 1.46453 * 119.99888 * 353.06136 * 19 18 17 22 22 C 1.37470 * 125.80735 * 156.31540 * 21 19 18 23 23 C 1.40658 * 107.55314 * 179.87461 * 22 21 19 24 24 S 1.76021 * 142.39046 * 180.02562 * 23 22 21 25 25 C 1.75588 * 91.31026 * 180.36935 * 24 23 22 26 26 C 1.32770 * 110.47455 * 359.97438 * 25 24 23 27 27 C 1.38243 * 108.03700 * 0.38504 * 23 22 21 28 28 N 1.37919 * 125.80796 * 336.61800 * 21 19 18 29 29 H 0.96999 * 125.68117 * 0.02562 * 28 21 19 30 30 H 1.08996 * 109.47479 * 176.94695 * 1 2 3 31 31 H 1.08996 * 109.47032 * 296.95475 * 1 2 3 32 32 H 1.09004 * 109.47133 * 56.94971 * 1 2 3 33 33 H 1.08993 * 109.50015 * 294.36781 * 4 2 1 34 34 H 1.09000 * 109.49989 * 54.43775 * 4 2 1 35 35 H 0.96998 * 120.00144 * 25.00091 * 7 5 4 36 36 H 0.96997 * 120.00091 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.39092 * 301.27629 * 16 5 4 38 38 H 1.08998 * 109.61944 * 181.16712 * 16 5 4 39 39 H 1.08996 * 109.58553 * 185.71907 * 17 16 5 40 40 H 1.09001 * 109.58612 * 65.43573 * 17 16 5 41 41 H 1.07996 * 126.21550 * 359.97438 * 22 21 19 42 42 H 1.08003 * 124.76487 * 180.02562 * 25 24 23 43 43 H 1.08007 * 122.16246 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7294 1.2455 5 6 3.5674 -0.8482 1.1702 6 1 4.0061 0.1472 1.0994 7 7 4.0650 -1.5159 2.3755 8 6 5.3495 -1.2989 2.7976 9 1 5.9958 -0.6359 2.2417 10 6 5.8212 -1.9321 3.9393 11 7 7.0556 -1.7231 4.3453 12 14 4.7035 -3.0795 4.9004 13 1 4.8448 -4.4618 4.3765 14 1 5.0831 -3.0529 6.3358 15 1 3.2940 -2.6359 4.7529 16 6 3.9600 -1.6644 -0.0638 17 6 3.4650 -0.9471 -1.3237 18 7 2.0225 -0.6997 -1.1944 19 6 1.1674 -1.1062 -2.1536 20 8 -0.0334 -1.0099 -1.9791 21 6 1.6830 -1.6640 -3.4057 22 6 1.0039 -2.5115 -4.2486 23 6 1.8534 -2.8041 -5.3308 24 16 1.9336 -3.7177 -6.8332 25 6 3.5729 -3.1631 -7.1300 26 6 3.9762 -2.3613 -6.1516 27 6 3.0473 -2.1366 -5.1304 28 7 2.9346 -1.4331 -3.9370 29 1 3.6220 -0.8734 -3.5431 30 1 -0.3634 -1.0261 -0.0547 31 1 -0.3633 0.4658 0.9160 32 1 -0.3633 0.5605 -0.8614 33 1 1.7659 -0.1669 2.1368 34 1 1.6023 -1.7252 1.2917 35 1 3.4846 -2.1117 2.8745 36 1 7.3851 -2.1652 5.1433 37 1 3.5035 -2.6523 -0.0045 38 1 5.0445 -1.7661 -0.1055 39 1 3.6517 -1.5719 -2.1970 40 1 3.9901 0.0017 -1.4342 41 1 0.0000 -2.8835 -4.1063 42 1 4.1692 -3.4353 -7.9884 43 1 4.9582 -1.9116 -6.1447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044810767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:53 Heat of formation + Delta-G solvation = 61.799253 kcal Electronic energy + Delta-G solvation = -26362.289663 eV Core-core repulsion = 22728.580095 eV Total energy + Delta-G solvation = -3633.709568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.68597 -41.10455 -38.85628 -36.50435 -36.27182 -34.07253 -33.77522 -32.03544 -31.64277 -29.39363 -28.30678 -26.06930 -24.79544 -24.30900 -23.85373 -22.31682 -21.62481 -21.48938 -20.28360 -19.66998 -18.85594 -17.52431 -17.16322 -16.79558 -16.77771 -16.40650 -15.95803 -15.56164 -15.52822 -15.18730 -14.98395 -14.84844 -14.63359 -14.59077 -14.13417 -13.89120 -13.72419 -13.43596 -13.24082 -13.02902 -12.91196 -12.78526 -12.65705 -12.41679 -12.12804 -12.09137 -12.02621 -11.80872 -11.74525 -11.43591 -10.97496 -10.73530 -10.40760 -9.76923 -9.34149 -9.08889 -8.64458 -8.03150 -5.36147 -0.23140 0.58763 0.86716 1.16129 1.37402 1.38612 1.46083 1.63485 1.78326 1.86126 2.22807 2.47135 3.28329 3.33629 3.46469 3.70931 3.80708 3.87961 3.97892 4.00308 4.12578 4.24623 4.37187 4.41674 4.50899 4.52897 4.56497 4.62283 4.75940 4.79796 4.89745 4.94764 4.98629 5.08782 5.11161 5.20504 5.35040 5.40968 5.43280 5.57580 5.62746 5.76749 6.20396 6.21251 6.30912 6.95570 7.06773 7.83346 8.01096 9.18074 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.002964 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.685652 B = 9445.471546 C =10534.414804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.152 3.848 3 H 0.094 0.906 4 C -0.129 4.129 5 C 0.177 3.823 6 H 0.055 0.945 7 N -0.752 5.752 8 C -0.224 4.224 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.283 1.283 14 H -0.298 1.298 15 H -0.254 1.254 16 C -0.140 4.140 17 C 0.095 3.905 18 N -0.599 5.599 19 C 0.586 3.414 20 O -0.543 6.543 21 C -0.002 4.002 22 C -0.089 4.089 23 C -0.248 4.248 24 S 0.128 5.872 25 C -0.171 4.171 26 C -0.129 4.129 27 C 0.061 3.939 28 N -0.535 5.535 29 H 0.433 0.567 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.363 0.637 36 H 0.257 0.743 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.152 0.848 42 H 0.206 0.794 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.345 0.333 -24.427 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.112 0.888 4 C -0.168 4.168 5 C 0.069 3.931 6 H 0.073 0.927 7 N -0.394 5.394 8 C -0.355 4.355 9 H 0.082 0.918 10 C -0.254 4.254 11 N -0.633 5.633 12 Si 0.776 3.224 13 H -0.209 1.209 14 H -0.225 1.225 15 H -0.178 1.178 16 C -0.181 4.181 17 C -0.028 4.028 18 N -0.331 5.331 19 C 0.375 3.625 20 O -0.422 6.422 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.368 4.368 24 S 0.387 5.613 25 C -0.307 4.307 26 C -0.162 4.162 27 C -0.058 4.058 28 N -0.144 5.144 29 H 0.278 0.722 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.170 0.830 42 H 0.223 0.777 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.629 -0.306 -24.968 27.545 hybrid contribution 1.177 0.245 2.151 2.464 sum -10.452 -0.061 -22.817 25.097 Atomic orbital electron populations 1.22084 0.92301 1.02763 1.01253 1.21361 0.95741 0.95551 0.82412 0.88839 1.22229 0.95148 1.01185 0.98242 1.20390 0.92525 0.94941 0.85225 0.92743 1.42838 1.11536 1.55538 1.29525 1.19027 0.88682 1.21387 1.06375 0.91817 1.25416 0.97533 1.02578 0.99840 1.69860 1.17305 1.49146 1.27031 0.85508 0.79778 0.79329 0.77747 1.20949 1.22494 1.17819 1.22417 1.01231 0.99411 0.95034 1.22301 0.79348 1.01958 0.99192 1.48151 1.07681 1.57011 1.20258 1.17197 0.85784 0.77435 0.82061 1.90910 1.15491 1.55896 1.79907 1.20226 0.86726 1.07046 0.97674 1.20502 0.99652 0.99790 0.92031 1.22949 0.99667 1.10404 1.03775 1.83916 1.12785 1.49997 1.14560 1.25704 0.98679 1.02283 1.04004 1.19218 1.00836 1.03529 0.92588 1.18881 0.96469 0.99601 0.90879 1.42729 1.13225 1.40649 1.17805 0.72155 0.92693 0.92048 0.91839 0.89968 0.92399 0.80454 0.93444 0.93155 0.91366 0.88391 0.88396 0.82982 0.77708 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 7.59 71.98 0.55 -2.59 16 2 C 0.15 3.68 3.49 44.98 0.16 3.84 16 3 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.13 -3.66 4.84 30.68 0.15 -3.51 16 5 C 0.18 6.00 2.73 45.03 0.12 6.12 16 6 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 7 N -0.75 -33.14 4.93 -322.75 -1.59 -34.73 16 8 C -0.22 -12.11 10.41 84.03 0.87 -11.24 16 9 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 10 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 11 N -0.98 -61.66 13.97 21.65 0.30 -61.36 16 12 Si 0.95 44.96 27.74 68.60 1.90 46.86 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.25 -10.89 6.52 99.48 0.65 -10.25 16 16 C -0.14 -4.17 5.67 30.69 0.17 -3.99 16 17 C 0.10 2.03 5.27 86.36 0.46 2.49 16 18 N -0.60 -14.32 2.97 -799.94 -2.38 -16.70 16 19 C 0.59 15.53 7.53 86.38 0.65 16.18 16 20 O -0.54 -16.86 12.35 -4.44 -0.05 -16.92 16 21 C 0.00 -0.06 6.36 40.15 0.26 0.20 16 22 C -0.09 -2.17 10.68 22.68 0.24 -1.93 16 23 C -0.25 -5.44 7.26 22.86 0.17 -5.28 16 24 S 0.13 2.08 23.31 -56.49 -1.32 0.76 16 25 C -0.17 -2.01 11.13 66.64 0.74 -1.27 16 26 C -0.13 -1.80 10.16 21.49 0.22 -1.58 16 27 C 0.06 1.19 7.67 38.40 0.29 1.49 16 28 N -0.54 -10.23 4.88 -177.14 -0.87 -11.09 16 29 H 0.43 6.25 6.33 -92.71 -0.59 5.66 16 30 H 0.05 1.57 6.74 -2.39 -0.02 1.55 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.66 6.75 -2.38 -0.02 1.64 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.36 15.79 5.66 -92.71 -0.52 15.26 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 1.85 4.19 -2.39 -0.01 1.84 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 42 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -70.45 352.46 1.40 -69.04 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.11 Total: 28.30 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 5.51 Total: -4.17 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.53 Total: -123.88 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.05 Total: -16.92 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.76 kcal Total: -70.45 1.40 -69.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.844 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds