Wall clock time and date at job start Tue Mar 31 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.70157 * 2 1 4 4 C 1.53186 * 109.58727 * 120.35593 * 2 1 3 5 5 C 1.53042 * 109.31369 * 65.15314 * 4 2 1 6 6 H 1.09005 * 109.44818 * 301.34517 * 5 4 2 7 7 N 1.46507 * 109.46121 * 181.38844 * 5 4 2 8 8 C 1.36933 * 120.00041 * 154.93088 * 7 5 4 9 9 H 1.07994 * 120.00328 * 359.71957 * 8 7 5 10 10 C 1.38817 * 119.99824 * 179.72478 * 8 7 5 11 11 N 1.31616 * 119.99766 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99964 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47479 * 90.00240 * 12 10 8 14 14 H 1.48498 * 109.47087 * 210.00376 * 12 10 8 15 15 H 1.48504 * 109.47264 * 329.99922 * 12 10 8 16 16 C 1.53032 * 109.53981 * 61.36402 * 5 4 2 17 17 C 1.53188 * 109.31273 * 298.63426 * 16 5 4 18 18 N 1.46928 * 108.77740 * 54.63586 * 17 16 5 19 19 C 1.34777 * 120.63109 * 126.36192 * 18 17 16 20 20 O 1.21730 * 119.99718 * 179.77132 * 19 18 17 21 21 C 1.46451 * 119.99950 * 359.78269 * 19 18 17 22 22 C 1.37468 * 125.80545 * 210.12839 * 21 19 18 23 23 C 1.40653 * 107.55706 * 180.02562 * 22 21 19 24 24 S 1.76022 * 142.39596 * 180.02562 * 23 22 21 25 25 C 1.75591 * 91.31214 * 180.02562 * 24 23 22 26 26 C 1.32782 * 110.47309 * 359.97438 * 25 24 23 27 27 C 1.38250 * 108.03528 * 0.02562 * 23 22 21 28 28 N 1.37916 * 125.80871 * 29.82451 * 21 19 18 29 29 H 0.97000 * 125.68568 * 359.97438 * 28 21 19 30 30 H 1.09004 * 109.47313 * 180.35689 * 1 2 3 31 31 H 1.08999 * 109.47058 * 300.35634 * 1 2 3 32 32 H 1.08998 * 109.47432 * 60.35552 * 1 2 3 33 33 H 1.08999 * 109.49803 * 305.20118 * 4 2 1 34 34 H 1.08998 * 109.49676 * 185.10043 * 4 2 1 35 35 H 0.97005 * 119.99631 * 334.65382 * 7 5 4 36 36 H 0.97004 * 119.99913 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.50000 * 58.58708 * 16 5 4 38 38 H 1.09008 * 109.49835 * 178.68247 * 16 5 4 39 39 H 1.09007 * 109.58719 * 174.42292 * 17 16 5 40 40 H 1.09003 * 109.58839 * 294.70301 * 17 16 5 41 41 H 1.07999 * 126.21733 * 359.97438 * 22 21 19 42 42 H 1.07999 * 124.76568 * 180.02562 * 25 24 23 43 43 H 1.07998 * 122.15848 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6415 -2.2041 1.1701 6 1 0.5565 -2.2813 1.0993 7 7 2.1024 -2.8978 2.3754 8 6 1.4641 -4.0332 2.7982 9 1 0.6183 -4.4147 2.2458 10 6 1.9044 -4.6936 3.9371 11 7 1.2907 -5.7846 4.3437 12 14 3.3679 -4.0340 4.8923 13 1 2.8941 -3.0824 5.9291 14 1 4.0822 -5.1610 5.5441 15 1 4.2910 -3.3343 3.9629 16 6 2.2800 -2.8464 -0.0635 17 6 1.7691 -2.1411 -1.3237 18 7 2.0225 -0.6996 -1.1945 19 6 2.6944 -0.0318 -2.1532 20 8 2.8943 1.1633 -2.0364 21 6 3.1839 -0.7440 -3.3356 22 6 4.3037 -0.4192 -4.0638 23 6 4.4136 -1.3513 -5.1115 24 16 5.4140 -1.7843 -6.4935 25 6 4.3659 -3.1394 -6.8788 26 6 3.3648 -3.2140 -6.0097 27 6 3.3560 -2.2359 -5.0100 28 7 2.6031 -1.8581 -3.9045 29 1 1.8009 -2.3021 -3.5877 30 1 -0.3634 -1.0277 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.6075 -0.2784 2.1368 34 1 3.1297 -0.6504 1.2912 35 1 2.8621 -2.5551 2.8716 36 1 1.5985 -6.2464 5.1393 37 1 3.3639 -2.7474 -0.0053 38 1 2.0123 -3.9023 -0.1036 39 1 2.2944 -2.5276 -2.1972 40 1 0.6991 -2.3178 -1.4330 41 1 4.9762 0.4027 -3.8676 42 1 4.5150 -3.8175 -7.7061 43 1 2.6060 -3.9800 -6.0713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044810768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:58 Heat of formation + Delta-G solvation = 67.853879 kcal Electronic energy + Delta-G solvation = -26376.853930 eV Core-core repulsion = 22743.406910 eV Total energy + Delta-G solvation = -3633.447020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78393 -39.97096 -37.77535 -35.62831 -34.81103 -32.75216 -31.96653 -31.14258 -30.01673 -28.41279 -27.54983 -24.65119 -23.61677 -23.29354 -22.79789 -21.25645 -20.89770 -19.93186 -19.10625 -18.24207 -17.44123 -16.85363 -16.05102 -15.71968 -15.55448 -15.12982 -14.63271 -14.44741 -14.28145 -14.10336 -13.91221 -13.68189 -13.50498 -13.11123 -12.96790 -12.94792 -12.63801 -12.18305 -12.07174 -11.97870 -11.76686 -11.49412 -11.14077 -11.07740 -11.03730 -10.93148 -10.64594 -10.30282 -10.13371 -9.93730 -9.84598 -9.66339 -9.00497 -8.78589 -8.29117 -7.89939 -7.36848 -5.85210 -3.21461 0.55389 1.30173 1.75556 1.84671 2.51546 2.53381 2.77255 3.18010 3.32617 3.35966 3.40965 4.29470 4.50374 4.52328 4.72641 4.74501 4.90704 4.99079 5.06321 5.10822 5.19849 5.26822 5.34329 5.45365 5.49330 5.54756 5.61590 5.66519 5.72152 5.74832 5.87416 5.92554 6.07912 6.13445 6.22120 6.25144 6.26171 6.36180 6.47706 6.67415 6.82732 7.01744 7.25307 7.89319 7.95276 8.33748 9.11630 9.84591 10.04027 11.32857 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003011 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.007613 B = 9295.585937 C =10238.820629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.100 0.900 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.061 0.939 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.090 0.910 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.149 4.149 17 C 0.084 3.916 18 N -0.595 5.595 19 C 0.586 3.414 20 O -0.529 6.529 21 C 0.020 3.980 22 C -0.080 4.080 23 C -0.215 4.215 24 S 0.127 5.873 25 C -0.190 4.190 26 C -0.112 4.112 27 C 0.058 3.942 28 N -0.541 5.541 29 H 0.424 0.576 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 8.533 -21.906 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.118 0.882 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.079 0.921 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.039 4.039 18 N -0.328 5.328 19 C 0.374 3.626 20 O -0.405 6.405 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.335 4.335 24 S 0.386 5.614 25 C -0.326 4.326 26 C -0.146 4.146 27 C -0.060 4.060 28 N -0.149 5.149 29 H 0.268 0.732 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.190 9.466 -22.329 24.612 hybrid contribution -0.593 -0.768 1.542 1.822 sum 3.597 8.698 -20.787 22.819 Atomic orbital electron populations 1.22161 0.94600 1.02983 1.02254 1.21240 0.94264 0.97165 0.83290 0.88188 1.22273 1.01454 0.97222 0.96783 1.20167 0.97405 0.88809 0.86218 0.92120 1.42797 1.37256 1.30713 1.28123 1.19036 1.10972 0.99991 1.07634 0.89220 1.24672 0.98890 0.97174 0.98221 1.69697 1.42610 1.19398 1.26270 0.86563 0.83486 0.78161 0.80369 1.21013 1.21724 1.20344 1.22633 1.01267 1.00838 0.94317 1.22336 1.01176 0.79682 1.00736 1.48200 1.54602 1.09442 1.20524 1.17024 0.78007 0.86228 0.81376 1.90851 1.57520 1.13592 1.78565 1.20265 0.98608 0.91678 0.98953 1.20347 0.97529 0.99832 0.93353 1.22671 1.02284 1.04069 1.04520 1.83909 1.28225 1.26156 1.23062 1.25223 0.99335 1.03456 1.04617 1.18914 1.01470 0.99689 0.94491 1.18421 0.94779 0.99414 0.93362 1.42798 1.24860 1.24438 1.22786 0.73170 0.91515 0.90973 0.92696 0.90163 0.91761 0.80598 0.92985 0.92046 0.90037 0.89968 0.90803 0.82798 0.81052 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.03 37.16 0.34 -1.51 16 2 C 0.14 1.87 3.21 -67.60 -0.22 1.65 16 3 H 0.10 1.37 7.00 -51.93 -0.36 1.00 16 4 C -0.14 -2.05 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.18 2.52 -67.89 -0.17 3.01 16 6 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 7 N -0.75 -16.65 4.92 -53.38 -0.26 -16.91 16 8 C -0.25 -6.60 10.41 -15.06 -0.16 -6.76 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 11 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 12 Si 0.88 21.66 27.73 -169.99 -4.71 16.95 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.44 6.52 56.52 0.37 -6.08 16 16 C -0.15 -2.31 5.66 -26.62 -0.15 -2.46 16 17 C 0.08 0.99 5.12 -3.71 -0.02 0.97 16 18 N -0.60 -7.68 2.68 -166.83 -0.45 -8.13 16 19 C 0.59 8.30 7.61 -12.95 -0.10 8.20 16 20 O -0.53 -8.92 16.41 5.16 0.08 -8.83 16 21 C 0.02 0.25 6.32 -82.10 -0.52 -0.27 16 22 C -0.08 -1.01 10.72 -38.95 -0.42 -1.43 16 23 C -0.22 -2.51 7.26 -38.67 -0.28 -2.79 16 24 S 0.13 1.16 23.31 -107.50 -2.51 -1.35 16 25 C -0.19 -1.46 11.13 28.86 0.32 -1.14 16 26 C -0.11 -0.97 10.16 -40.85 -0.42 -1.38 16 27 C 0.06 0.63 7.67 -84.00 -0.64 -0.01 16 28 N -0.54 -5.70 4.86 -7.34 -0.04 -5.74 16 29 H 0.42 3.56 6.49 -40.82 -0.26 3.29 16 30 H 0.07 0.78 5.73 -51.93 -0.30 0.48 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.36 8.09 5.66 -40.82 -0.23 7.86 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 39 H 0.08 0.87 3.90 -51.93 -0.20 0.66 16 40 H 0.07 0.75 7.51 -51.93 -0.39 0.36 16 41 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -32.56 354.07 -9.91 -42.47 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.48 Total: 9.93 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.66 Total: -6.00 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.03 Total: -58.51 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.56 -9.91 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.326 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds