Wall clock time and date at job start Tue Mar 31 2020 18:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.70157 * 2 1 4 4 C 1.53186 * 109.58727 * 120.35593 * 2 1 3 5 5 C 1.53042 * 109.31369 * 65.15314 * 4 2 1 6 6 H 1.09005 * 109.44818 * 301.34517 * 5 4 2 7 7 N 1.46507 * 109.46121 * 181.38844 * 5 4 2 8 8 C 1.36933 * 120.00041 * 154.93088 * 7 5 4 9 9 H 1.07994 * 120.00328 * 359.71957 * 8 7 5 10 10 C 1.38817 * 119.99824 * 179.72478 * 8 7 5 11 11 N 1.31616 * 119.99766 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 119.99964 * 359.97438 * 10 8 7 13 13 H 1.48495 * 109.47479 * 90.00240 * 12 10 8 14 14 H 1.48498 * 109.47087 * 210.00376 * 12 10 8 15 15 H 1.48504 * 109.47264 * 329.99922 * 12 10 8 16 16 C 1.53032 * 109.53981 * 61.36402 * 5 4 2 17 17 C 1.53188 * 109.31273 * 298.63426 * 16 5 4 18 18 N 1.46928 * 108.77740 * 54.63586 * 17 16 5 19 19 C 1.34777 * 120.63109 * 126.36192 * 18 17 16 20 20 O 1.21730 * 119.99718 * 179.77132 * 19 18 17 21 21 C 1.46451 * 119.99950 * 359.78269 * 19 18 17 22 22 C 1.37468 * 125.80545 * 210.12839 * 21 19 18 23 23 C 1.40653 * 107.55706 * 180.02562 * 22 21 19 24 24 S 1.76022 * 142.39596 * 180.02562 * 23 22 21 25 25 C 1.75591 * 91.31214 * 180.02562 * 24 23 22 26 26 C 1.32782 * 110.47309 * 359.97438 * 25 24 23 27 27 C 1.38250 * 108.03528 * 0.02562 * 23 22 21 28 28 N 1.37916 * 125.80871 * 29.82451 * 21 19 18 29 29 H 0.97000 * 125.68568 * 359.97438 * 28 21 19 30 30 H 1.09004 * 109.47313 * 180.35689 * 1 2 3 31 31 H 1.08999 * 109.47058 * 300.35634 * 1 2 3 32 32 H 1.08998 * 109.47432 * 60.35552 * 1 2 3 33 33 H 1.08999 * 109.49803 * 305.20118 * 4 2 1 34 34 H 1.08998 * 109.49676 * 185.10043 * 4 2 1 35 35 H 0.97005 * 119.99631 * 334.65382 * 7 5 4 36 36 H 0.97004 * 119.99913 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.50000 * 58.58708 * 16 5 4 38 38 H 1.09008 * 109.49835 * 178.68247 * 16 5 4 39 39 H 1.09007 * 109.58719 * 174.42292 * 17 16 5 40 40 H 1.09003 * 109.58839 * 294.70301 * 17 16 5 41 41 H 1.07999 * 126.21733 * 359.97438 * 22 21 19 42 42 H 1.07999 * 124.76568 * 180.02562 * 25 24 23 43 43 H 1.07998 * 122.15848 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6415 -2.2041 1.1701 6 1 0.5565 -2.2813 1.0993 7 7 2.1024 -2.8978 2.3754 8 6 1.4641 -4.0332 2.7982 9 1 0.6183 -4.4147 2.2458 10 6 1.9044 -4.6936 3.9371 11 7 1.2907 -5.7846 4.3437 12 14 3.3679 -4.0340 4.8923 13 1 2.8941 -3.0824 5.9291 14 1 4.0822 -5.1610 5.5441 15 1 4.2910 -3.3343 3.9629 16 6 2.2800 -2.8464 -0.0635 17 6 1.7691 -2.1411 -1.3237 18 7 2.0225 -0.6996 -1.1945 19 6 2.6944 -0.0318 -2.1532 20 8 2.8943 1.1633 -2.0364 21 6 3.1839 -0.7440 -3.3356 22 6 4.3037 -0.4192 -4.0638 23 6 4.4136 -1.3513 -5.1115 24 16 5.4140 -1.7843 -6.4935 25 6 4.3659 -3.1394 -6.8788 26 6 3.3648 -3.2140 -6.0097 27 6 3.3560 -2.2359 -5.0100 28 7 2.6031 -1.8581 -3.9045 29 1 1.8009 -2.3021 -3.5877 30 1 -0.3634 -1.0277 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 1.6075 -0.2784 2.1368 34 1 3.1297 -0.6504 1.2912 35 1 2.8621 -2.5551 2.8716 36 1 1.5985 -6.2464 5.1393 37 1 3.3639 -2.7474 -0.0053 38 1 2.0123 -3.9023 -0.1036 39 1 2.2944 -2.5276 -2.1972 40 1 0.6991 -2.3178 -1.4330 41 1 4.9762 0.4027 -3.8676 42 1 4.5150 -3.8175 -7.7061 43 1 2.6060 -3.9800 -6.0713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044810768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:57 Heat of formation + Delta-G solvation = 47.601034 kcal Electronic energy + Delta-G solvation = -26377.732159 eV Core-core repulsion = 22743.406910 eV Total energy + Delta-G solvation = -3634.325249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68238 -41.02979 -39.02422 -36.52808 -36.26636 -34.06736 -33.55406 -32.02513 -31.63980 -29.35439 -28.67261 -26.01856 -24.79023 -24.45072 -23.81065 -22.64208 -21.78967 -20.98727 -20.18642 -19.66176 -18.84548 -17.89222 -17.06562 -16.84627 -16.57772 -16.43029 -15.89722 -15.57494 -15.30534 -15.28298 -15.09040 -14.86547 -14.66784 -14.54330 -14.16140 -14.03899 -13.88120 -13.49393 -13.13813 -13.00192 -12.88386 -12.77318 -12.53443 -12.45451 -12.22798 -12.08650 -11.96836 -11.80636 -11.74612 -11.30791 -11.16382 -10.94765 -10.74847 -9.89567 -9.33236 -9.10051 -8.65361 -8.02485 -5.35248 -0.23476 0.57390 0.85536 1.15648 1.37846 1.38999 1.46177 1.59971 1.77046 1.79003 2.19430 2.47618 3.28251 3.30636 3.48007 3.72188 3.79851 3.84945 3.97673 3.99182 4.15782 4.18885 4.34746 4.42161 4.46955 4.49447 4.56487 4.64217 4.69620 4.75326 4.92547 4.96586 4.98454 4.99741 5.08610 5.18217 5.26075 5.40645 5.41630 5.50893 5.58482 5.77724 6.16269 6.21764 6.27944 6.86986 7.07515 7.84221 8.01850 9.18755 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.003011 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.007613 B = 9295.585937 C =10238.820629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.096 0.904 4 C -0.129 4.129 5 C 0.178 3.822 6 H 0.061 0.939 7 N -0.752 5.752 8 C -0.222 4.222 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.280 1.280 14 H -0.299 1.299 15 H -0.258 1.258 16 C -0.141 4.141 17 C 0.094 3.906 18 N -0.592 5.592 19 C 0.588 3.412 20 O -0.562 6.562 21 C 0.000 4.000 22 C -0.091 4.091 23 C -0.248 4.248 24 S 0.130 5.870 25 C -0.170 4.170 26 C -0.129 4.129 27 C 0.062 3.938 28 N -0.534 5.534 29 H 0.433 0.567 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.152 0.848 42 H 0.207 0.793 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 8.827 -23.971 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.114 0.886 4 C -0.168 4.168 5 C 0.070 3.930 6 H 0.079 0.921 7 N -0.394 5.394 8 C -0.353 4.353 9 H 0.082 0.918 10 C -0.253 4.253 11 N -0.633 5.633 12 Si 0.777 3.223 13 H -0.206 1.206 14 H -0.226 1.226 15 H -0.182 1.182 16 C -0.182 4.182 17 C -0.030 4.030 18 N -0.324 5.324 19 C 0.377 3.623 20 O -0.441 6.441 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.367 4.367 24 S 0.389 5.611 25 C -0.306 4.306 26 C -0.161 4.161 27 C -0.057 4.057 28 N -0.143 5.143 29 H 0.279 0.721 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.195 0.805 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.170 0.830 42 H 0.223 0.777 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.510 9.798 -24.430 26.705 hybrid contribution -0.701 -0.875 2.009 2.301 sum 3.809 8.923 -22.421 24.430 Atomic orbital electron populations 1.22117 0.92971 1.03112 1.03194 1.21207 0.95434 0.96596 0.82422 0.88577 1.22161 1.01079 0.95453 0.98108 1.20414 0.97475 0.90065 0.85061 0.92130 1.42859 1.37034 1.29765 1.29788 1.19022 1.09514 1.00406 1.06399 0.91777 1.25406 1.02170 0.97872 0.99892 1.69861 1.44890 1.21418 1.27166 0.85510 0.80412 0.77291 0.79132 1.20581 1.22624 1.18246 1.22426 1.00378 1.00235 0.95175 1.22331 1.02693 0.78637 0.99304 1.48211 1.54191 1.09711 1.20249 1.17178 0.77430 0.85884 0.81784 1.90826 1.58821 1.15026 1.79412 1.20002 0.99367 0.92898 0.99145 1.20492 0.97678 1.00101 0.93866 1.22935 1.03738 1.04534 1.05526 1.83921 1.28296 1.26957 1.21948 1.25714 0.97778 1.02464 1.04663 1.19214 1.02742 1.00072 0.94094 1.18877 0.94119 0.99446 0.93265 1.42679 1.25073 1.23837 1.22686 0.72087 0.91687 0.90035 0.91853 0.89660 0.92456 0.80508 0.93467 0.93238 0.91430 0.88355 0.88426 0.83027 0.77653 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.03 71.98 0.65 -2.58 16 2 C 0.15 3.61 3.21 44.97 0.14 3.75 16 3 H 0.10 2.53 7.00 -2.39 -0.02 2.51 16 4 C -0.13 -3.66 5.02 30.67 0.15 -3.50 16 5 C 0.18 5.98 2.52 45.01 0.11 6.09 16 6 H 0.06 2.07 6.43 -2.38 -0.02 2.05 16 7 N -0.75 -32.97 4.92 -322.81 -1.59 -34.56 16 8 C -0.22 -11.98 10.41 84.04 0.87 -11.10 16 9 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 10 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 11 N -0.98 -61.46 13.97 21.65 0.30 -61.16 16 12 Si 0.95 44.89 27.73 68.60 1.90 46.79 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 14 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 15 H -0.26 -11.18 6.52 99.48 0.65 -10.53 16 16 C -0.14 -4.23 5.66 30.67 0.17 -4.05 16 17 C 0.09 2.03 5.12 86.36 0.44 2.47 16 18 N -0.59 -14.49 2.68 -799.92 -2.14 -16.64 16 19 C 0.59 16.27 7.61 86.38 0.66 16.93 16 20 O -0.56 -18.92 16.41 -4.45 -0.07 -18.99 16 21 C 0.00 0.00 6.32 40.14 0.25 0.26 16 22 C -0.09 -2.27 10.72 22.68 0.24 -2.02 16 23 C -0.25 -5.51 7.26 22.86 0.17 -5.35 16 24 S 0.13 2.12 23.31 -56.49 -1.32 0.81 16 25 C -0.17 -2.01 11.13 66.64 0.74 -1.27 16 26 C -0.13 -1.80 10.16 21.49 0.22 -1.58 16 27 C 0.06 1.23 7.67 38.40 0.29 1.52 16 28 N -0.53 -10.35 4.86 -177.14 -0.86 -11.21 16 29 H 0.43 6.28 6.49 -92.71 -0.60 5.68 16 30 H 0.06 1.37 5.73 -2.38 -0.01 1.36 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.36 15.72 5.66 -92.70 -0.53 15.19 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.10 1.87 3.90 -2.38 -0.01 1.86 16 40 H 0.10 1.73 7.51 -2.39 -0.02 1.71 16 41 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 42 H 0.21 0.96 8.06 -2.91 -0.02 0.93 16 43 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -71.52 354.07 1.70 -69.83 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.12 Total: 28.64 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.59 Total: -3.51 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -4.29 Total: -123.57 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.07 Total: -18.99 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -1.32 Total: 0.81 kcal Total: -71.52 1.70 -69.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044810768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.427 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds