Wall clock time and date at job start Tue Mar 31 2020 18:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58837 * 2 1 4 4 C 1.53193 * 109.58746 * 239.71650 * 2 1 3 5 5 C 1.53037 * 109.31321 * 185.57582 * 4 2 1 6 6 H 1.09002 * 109.44974 * 301.35439 * 5 4 2 7 7 N 1.46503 * 109.45817 * 181.38609 * 5 4 2 8 8 C 1.36937 * 119.99860 * 154.93756 * 7 5 4 9 9 H 1.08001 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00307 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99549 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00366 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47274 * 59.99636 * 12 10 8 14 14 H 1.48502 * 109.47510 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47039 * 299.99517 * 12 10 8 16 16 C 1.53045 * 109.53606 * 61.37004 * 5 4 2 17 17 C 1.53196 * 109.30878 * 298.63095 * 16 5 4 18 18 N 1.46921 * 108.89239 * 54.56903 * 17 16 5 19 19 C 1.34771 * 120.63476 * 126.46007 * 18 17 16 20 20 O 1.21735 * 120.00286 * 185.21692 * 19 18 17 21 21 C 1.46409 * 119.99768 * 5.21405 * 19 18 17 22 22 C 1.35783 * 124.95862 * 205.50458 * 21 19 18 23 23 C 1.38872 * 115.18436 * 179.97438 * 22 21 19 24 24 N 1.39748 * 139.91502 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.62972 * 0.02562 * 24 23 22 26 26 C 1.36215 * 108.73403 * 180.02562 * 24 23 22 27 27 C 1.34510 * 109.29885 * 0.02562 * 26 24 23 28 28 C 1.38247 * 113.39241 * 0.02562 * 23 22 21 29 29 S 1.75623 * 124.96085 * 25.20613 * 21 19 18 30 30 H 1.08996 * 109.47082 * 182.74400 * 1 2 3 31 31 H 1.09004 * 109.47089 * 302.74649 * 1 2 3 32 32 H 1.09004 * 109.47007 * 62.73836 * 1 2 3 33 33 H 1.09000 * 109.49443 * 65.62785 * 4 2 1 34 34 H 1.09001 * 109.52594 * 305.54617 * 4 2 1 35 35 H 0.96999 * 120.00172 * 334.93214 * 7 5 4 36 36 H 0.97007 * 119.99817 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49756 * 178.68110 * 16 5 4 38 38 H 1.09000 * 109.49676 * 58.58610 * 16 5 4 39 39 H 1.09002 * 109.58392 * 174.42113 * 17 16 5 40 40 H 1.08994 * 109.58793 * 294.70646 * 17 16 5 41 41 H 1.07996 * 122.40795 * 359.94508 * 22 21 19 42 42 H 1.08002 * 125.34865 * 180.02562 * 26 24 23 43 43 H 1.07998 * 126.07818 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 1 4.0059 0.1489 -1.0990 7 7 4.0651 -1.5127 -2.3773 8 6 5.3492 -1.2941 -2.7999 9 1 5.9950 -0.6303 -2.2442 10 6 5.8207 -1.9249 -3.9429 11 7 5.0336 -2.7336 -4.6204 12 14 7.5721 -1.6262 -4.5197 13 1 8.5215 -2.0491 -3.4591 14 1 7.8272 -2.4105 -5.7546 15 1 7.7597 -0.1809 -4.8044 16 6 3.9569 -1.6658 0.0614 17 6 3.4650 -0.9486 1.3225 18 7 2.0229 -0.6983 1.1956 19 6 1.1683 -1.1044 2.1553 20 8 -0.0318 -0.9765 1.9956 21 6 1.6832 -1.6994 3.3900 22 6 0.9979 -2.5638 4.1817 23 6 1.6826 -3.0042 5.3068 24 7 1.4991 -3.8419 6.4103 25 1 0.6984 -4.3540 6.6040 26 6 2.6303 -3.8203 7.1688 27 6 3.5329 -3.0025 6.5979 28 6 2.9547 -2.4745 5.4176 29 16 3.2800 -1.4050 4.0592 30 1 -0.3633 -1.0264 0.0492 31 1 -0.3633 0.5559 0.8644 32 1 -0.3633 0.4707 -0.9136 33 1 1.7660 -0.1641 -2.1370 34 1 1.6030 -1.7237 -1.2941 35 1 3.4851 -2.1087 -2.8766 36 1 5.3632 -3.1747 -5.4190 37 1 5.0412 -1.7698 0.1014 38 1 3.4983 -2.6529 0.0018 39 1 3.6517 -1.5746 2.1951 40 1 3.9921 -0.0010 1.4330 41 1 -0.0074 -2.8853 3.9532 42 1 2.7792 -4.3730 8.0846 43 1 4.5224 -2.7868 6.9728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044841500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:02 Heat of formation + Delta-G solvation = 70.406586 kcal Electronic energy + Delta-G solvation = -26158.245059 eV Core-core repulsion = 22524.908733 eV Total energy + Delta-G solvation = -3633.336326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35284 -40.35759 -37.44836 -35.27912 -34.50938 -32.74632 -31.92455 -31.09230 -29.39043 -28.21860 -26.95385 -24.61863 -23.95487 -23.00900 -22.18082 -21.26826 -20.64068 -19.94175 -18.65214 -18.44740 -17.11220 -16.75828 -15.93847 -15.59254 -15.42860 -14.83307 -14.70123 -14.48817 -14.33883 -13.97617 -13.70357 -13.61651 -13.24323 -13.10193 -12.76116 -12.56668 -12.35377 -12.16895 -11.97882 -11.69475 -11.59152 -11.34349 -10.92412 -10.89104 -10.76586 -10.71418 -10.38104 -10.25731 -9.84137 -9.81221 -9.68721 -9.09047 -8.90619 -8.46347 -8.20936 -7.72779 -6.97122 -5.76937 -3.06209 0.45820 1.32885 1.86509 2.26770 2.47033 2.69448 3.07411 3.25280 3.43683 3.48228 3.49201 4.45385 4.57812 4.68266 4.78268 4.98860 5.09360 5.17516 5.27069 5.29957 5.36781 5.49224 5.56830 5.58411 5.65624 5.74909 5.82054 5.83583 5.93604 6.03440 6.15901 6.27965 6.30873 6.38833 6.46887 6.49660 6.53667 6.56543 6.77118 6.91347 7.05742 7.16900 7.49114 7.68564 8.20681 8.41241 9.52424 10.09822 10.44667 11.45531 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.003064 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.439501 B = 9135.719766 C =10414.609494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.146 4.146 17 C 0.092 3.908 18 N -0.595 5.595 19 C 0.590 3.410 20 O -0.529 6.529 21 C -0.235 4.235 22 C -0.036 4.036 23 C 0.023 3.977 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.053 3.947 27 C -0.172 4.172 28 C -0.209 4.209 29 S 0.191 5.809 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.384 0.616 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.176 0.824 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 0.492 23.962 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.187 4.187 17 C -0.033 4.033 18 N -0.328 5.328 19 C 0.378 3.622 20 O -0.409 6.409 21 C -0.355 4.355 22 C -0.072 4.072 23 C -0.091 4.091 24 N -0.160 5.160 25 H 0.255 0.745 26 C -0.080 4.080 27 C -0.201 4.201 28 C -0.330 4.330 29 S 0.456 5.544 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.163 0.837 42 H 0.193 0.807 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.449 1.430 23.378 24.293 hybrid contribution -0.535 -1.423 0.139 1.526 sum -6.984 0.008 23.516 24.532 Atomic orbital electron populations 1.22216 0.92747 1.03650 1.00653 1.21362 0.95519 0.95023 0.83464 0.90825 1.22308 0.97573 1.01076 0.96474 1.20174 0.90936 0.95003 0.87049 0.93328 1.42419 1.12961 1.54419 1.26513 1.19192 0.89153 1.22322 1.06480 0.91174 1.24747 0.98143 0.99828 0.98171 1.69658 1.35464 1.33516 1.19431 0.86281 0.84603 0.77464 0.77910 1.21245 1.21748 1.21270 1.22651 1.01876 1.00064 0.94127 1.22371 0.79581 1.01184 1.00194 1.48051 1.07618 1.57026 1.20079 1.16917 0.85891 0.77881 0.81547 1.90880 1.14741 1.56004 1.79257 1.23886 0.99722 1.09246 1.02687 1.19156 1.00322 0.96676 0.91005 1.18000 0.96008 1.01353 0.93700 1.41908 1.15592 1.39110 1.19412 0.74462 1.21855 0.85987 1.02231 0.97929 1.20143 1.00885 1.03468 0.95610 1.23816 0.98625 1.07551 1.03014 1.84203 1.10995 1.47462 1.11786 0.91197 0.91203 0.93689 0.90449 0.91680 0.78233 0.93455 0.90327 0.92032 0.89587 0.90883 0.83691 0.80681 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.59 37.16 0.28 -1.68 16 2 C 0.15 2.20 3.49 -67.58 -0.24 1.96 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.27 4.84 -26.61 -0.13 -2.40 16 5 C 0.18 3.43 2.73 -67.89 -0.19 3.24 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 N -0.72 -17.73 5.12 -53.38 -0.27 -18.00 16 8 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 11 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 12 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 17 C 0.09 1.29 5.51 -3.71 -0.02 1.27 16 18 N -0.60 -8.80 2.98 -166.82 -0.50 -9.30 16 19 C 0.59 9.04 7.51 -12.97 -0.10 8.95 16 20 O -0.53 -9.02 12.32 5.16 0.06 -8.96 16 21 C -0.24 -3.19 5.87 -37.17 -0.22 -3.40 16 22 C -0.04 -0.44 9.95 -40.23 -0.40 -0.84 16 23 C 0.02 0.25 7.67 -84.01 -0.64 -0.39 16 24 N -0.56 -4.37 6.21 -10.89 -0.07 -4.44 16 25 H 0.42 1.96 8.96 -40.82 -0.37 1.59 16 26 C 0.05 0.37 11.85 -16.92 -0.20 0.17 16 27 C -0.17 -1.58 10.85 -39.60 -0.43 -2.01 16 28 C -0.21 -2.43 7.31 -38.28 -0.28 -2.71 16 29 S 0.19 2.25 19.06 -107.50 -2.05 0.20 16 30 H 0.07 1.12 6.83 -51.93 -0.35 0.77 16 31 H 0.07 1.05 6.67 -51.93 -0.35 0.71 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.14 3.51 -21.19 -0.07 1.06 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -32.73 355.04 -10.38 -43.11 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -5.65 Total: 9.82 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.95 Total: -7.62 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.11 Total: -59.00 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.06 Total: -8.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.05 Total: 0.20 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.73 -10.38 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.519 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds