Wall clock time and date at job start Tue Mar 31 2020 18:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58837 * 2 1 4 4 C 1.53193 * 109.58746 * 239.71650 * 2 1 3 5 5 C 1.53037 * 109.31321 * 185.57582 * 4 2 1 6 6 H 1.09002 * 109.44974 * 301.35439 * 5 4 2 7 7 N 1.46503 * 109.45817 * 181.38609 * 5 4 2 8 8 C 1.36937 * 119.99860 * 154.93756 * 7 5 4 9 9 H 1.08001 * 120.00123 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00307 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99549 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00366 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47274 * 59.99636 * 12 10 8 14 14 H 1.48502 * 109.47510 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47039 * 299.99517 * 12 10 8 16 16 C 1.53045 * 109.53606 * 61.37004 * 5 4 2 17 17 C 1.53196 * 109.30878 * 298.63095 * 16 5 4 18 18 N 1.46921 * 108.89239 * 54.56903 * 17 16 5 19 19 C 1.34771 * 120.63476 * 126.46007 * 18 17 16 20 20 O 1.21735 * 120.00286 * 185.21692 * 19 18 17 21 21 C 1.46409 * 119.99768 * 5.21405 * 19 18 17 22 22 C 1.35783 * 124.95862 * 205.50458 * 21 19 18 23 23 C 1.38872 * 115.18436 * 179.97438 * 22 21 19 24 24 N 1.39748 * 139.91502 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.62972 * 0.02562 * 24 23 22 26 26 C 1.36215 * 108.73403 * 180.02562 * 24 23 22 27 27 C 1.34510 * 109.29885 * 0.02562 * 26 24 23 28 28 C 1.38247 * 113.39241 * 0.02562 * 23 22 21 29 29 S 1.75623 * 124.96085 * 25.20613 * 21 19 18 30 30 H 1.08996 * 109.47082 * 182.74400 * 1 2 3 31 31 H 1.09004 * 109.47089 * 302.74649 * 1 2 3 32 32 H 1.09004 * 109.47007 * 62.73836 * 1 2 3 33 33 H 1.09000 * 109.49443 * 65.62785 * 4 2 1 34 34 H 1.09001 * 109.52594 * 305.54617 * 4 2 1 35 35 H 0.96999 * 120.00172 * 334.93214 * 7 5 4 36 36 H 0.97007 * 119.99817 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49756 * 178.68110 * 16 5 4 38 38 H 1.09000 * 109.49676 * 58.58610 * 16 5 4 39 39 H 1.09002 * 109.58392 * 174.42113 * 17 16 5 40 40 H 1.08994 * 109.58793 * 294.70646 * 17 16 5 41 41 H 1.07996 * 122.40795 * 359.94508 * 22 21 19 42 42 H 1.08002 * 125.34865 * 180.02562 * 26 24 23 43 43 H 1.07998 * 126.07818 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 1 4.0059 0.1489 -1.0990 7 7 4.0651 -1.5127 -2.3773 8 6 5.3492 -1.2941 -2.7999 9 1 5.9950 -0.6303 -2.2442 10 6 5.8207 -1.9249 -3.9429 11 7 5.0336 -2.7336 -4.6204 12 14 7.5721 -1.6262 -4.5197 13 1 8.5215 -2.0491 -3.4591 14 1 7.8272 -2.4105 -5.7546 15 1 7.7597 -0.1809 -4.8044 16 6 3.9569 -1.6658 0.0614 17 6 3.4650 -0.9486 1.3225 18 7 2.0229 -0.6983 1.1956 19 6 1.1683 -1.1044 2.1553 20 8 -0.0318 -0.9765 1.9956 21 6 1.6832 -1.6994 3.3900 22 6 0.9979 -2.5638 4.1817 23 6 1.6826 -3.0042 5.3068 24 7 1.4991 -3.8419 6.4103 25 1 0.6984 -4.3540 6.6040 26 6 2.6303 -3.8203 7.1688 27 6 3.5329 -3.0025 6.5979 28 6 2.9547 -2.4745 5.4176 29 16 3.2800 -1.4050 4.0592 30 1 -0.3633 -1.0264 0.0492 31 1 -0.3633 0.5559 0.8644 32 1 -0.3633 0.4707 -0.9136 33 1 1.7660 -0.1641 -2.1370 34 1 1.6030 -1.7237 -1.2941 35 1 3.4851 -2.1087 -2.8766 36 1 5.3632 -3.1747 -5.4190 37 1 5.0412 -1.7698 0.1014 38 1 3.4983 -2.6529 0.0018 39 1 3.6517 -1.5746 2.1951 40 1 3.9921 -0.0010 1.4330 41 1 -0.0074 -2.8853 3.9532 42 1 2.7792 -4.3730 8.0846 43 1 4.5224 -2.7868 6.9728 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044841500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:01 Heat of formation + Delta-G solvation = 49.738206 kcal Electronic energy + Delta-G solvation = -26159.141307 eV Core-core repulsion = 22524.908733 eV Total energy + Delta-G solvation = -3634.232574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09202 -41.54779 -38.80955 -36.28933 -36.08772 -34.03076 -33.66470 -31.79163 -31.08609 -29.22049 -28.25291 -26.10135 -25.19750 -24.53684 -23.19408 -22.22074 -21.60262 -21.28905 -19.66026 -19.43953 -19.03083 -17.76915 -17.13267 -16.73449 -16.57706 -16.43470 -15.67113 -15.54463 -15.45791 -15.39402 -15.23280 -14.77607 -14.49383 -14.28731 -13.96148 -13.68332 -13.58287 -13.28583 -13.11235 -12.98368 -12.88979 -12.78654 -12.63295 -12.34593 -12.20674 -12.06082 -12.03693 -11.80754 -11.54653 -11.36356 -10.87568 -10.57086 -10.29007 -9.68233 -9.08556 -8.96932 -8.52727 -7.90999 -5.20017 -0.44776 0.44378 0.98595 1.42776 1.49920 1.52669 1.58442 1.73786 1.76678 2.14296 2.25693 2.58847 3.41431 3.43891 3.73254 3.83083 3.98155 4.00565 4.07105 4.18768 4.21737 4.26555 4.31363 4.51471 4.57950 4.60963 4.69033 4.71104 4.75945 4.85815 4.98281 5.00552 5.05509 5.08977 5.15413 5.25587 5.41155 5.48953 5.55246 5.59905 5.66878 5.82843 6.29657 6.31901 6.63685 7.03892 7.36364 8.11378 8.35044 9.32495 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.003064 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.439501 B = 9135.719766 C =10414.609494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.152 3.848 3 H 0.093 0.907 4 C -0.124 4.124 5 C 0.175 3.825 6 H 0.054 0.946 7 N -0.737 5.737 8 C -0.236 4.236 9 H 0.081 0.919 10 C -0.078 4.078 11 N -0.973 5.973 12 Si 0.972 3.028 13 H -0.276 1.276 14 H -0.300 1.300 15 H -0.277 1.277 16 C -0.135 4.135 17 C 0.100 3.900 18 N -0.598 5.598 19 C 0.589 3.411 20 O -0.554 6.554 21 C -0.271 4.271 22 C -0.027 4.027 23 C -0.006 4.006 24 N -0.548 5.548 25 H 0.434 0.566 26 C 0.086 3.914 27 C -0.201 4.201 28 C -0.219 4.219 29 S 0.194 5.806 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.147 0.853 42 H 0.225 0.775 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 0.672 27.026 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 H 0.111 0.889 4 C -0.163 4.163 5 C 0.066 3.934 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.098 0.902 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.202 1.202 14 H -0.226 1.226 15 H -0.203 1.203 16 C -0.176 4.176 17 C -0.025 4.025 18 N -0.330 5.330 19 C 0.378 3.622 20 O -0.436 6.436 21 C -0.391 4.391 22 C -0.063 4.063 23 C -0.119 4.119 24 N -0.151 5.151 25 H 0.274 0.726 26 C -0.049 4.049 27 C -0.230 4.230 28 C -0.340 4.340 29 S 0.458 5.542 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.164 0.836 42 H 0.241 0.759 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.633 1.639 26.488 27.130 hybrid contribution -0.844 -1.559 -0.582 1.866 sum -6.477 0.080 25.906 26.703 Atomic orbital electron populations 1.22065 0.92423 1.02451 1.01184 1.21356 0.95690 0.95531 0.82488 0.88946 1.22160 0.95804 1.00548 0.97749 1.20401 0.92309 0.94838 0.85847 0.92819 1.42640 1.12226 1.54592 1.28097 1.19615 0.90100 1.21100 1.05936 0.90161 1.25558 1.02049 1.00478 0.98909 1.69828 1.37274 1.35291 1.19960 0.85236 0.80218 0.77427 0.77047 1.20244 1.22649 1.20337 1.22419 1.01245 0.99122 0.94833 1.22346 0.79258 1.02045 0.98862 1.48076 1.07844 1.57053 1.20013 1.17159 0.85605 0.77382 0.82075 1.90857 1.15680 1.57042 1.80008 1.23701 1.01262 1.11233 1.02891 1.19289 1.00256 0.95715 0.91044 1.17992 0.96078 1.03083 0.94746 1.42045 1.16645 1.38117 1.18243 0.72616 1.22664 0.84272 0.99957 0.98010 1.20559 1.02465 1.04637 0.95320 1.24153 0.99196 1.07167 1.03512 1.83906 1.09959 1.47805 1.12510 0.93179 0.91586 0.92206 0.90552 0.93250 0.79840 0.94205 0.91066 0.93859 0.88372 0.88841 0.83562 0.75906 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 7.59 71.98 0.55 -3.04 16 2 C 0.15 4.42 3.49 44.97 0.16 4.57 16 3 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.12 -4.19 4.84 30.67 0.15 -4.04 16 5 C 0.17 6.70 2.73 45.02 0.12 6.83 16 6 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 7 N -0.74 -36.77 5.12 -322.80 -1.65 -38.42 16 8 C -0.24 -12.81 9.93 84.03 0.83 -11.97 16 9 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 11 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 12 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 C -0.14 -4.66 5.66 30.67 0.17 -4.48 16 17 C 0.10 2.72 5.51 86.36 0.48 3.20 16 18 N -0.60 -17.52 2.98 -799.90 -2.38 -19.91 16 19 C 0.59 18.18 7.51 86.37 0.65 18.83 16 20 O -0.55 -19.26 12.32 -4.46 -0.05 -19.31 16 21 C -0.27 -7.33 5.87 23.83 0.14 -7.19 16 22 C -0.03 -0.66 9.95 21.85 0.22 -0.44 16 23 C -0.01 -0.13 7.67 38.03 0.29 0.16 16 24 N -0.55 -6.86 6.21 -188.37 -1.17 -8.03 16 25 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 26 C 0.09 0.82 11.85 83.16 0.99 1.80 16 27 C -0.20 -3.07 10.85 22.26 0.24 -2.83 16 28 C -0.22 -4.71 7.31 23.11 0.17 -4.54 16 29 S 0.19 4.41 19.06 -56.49 -1.08 3.33 16 30 H 0.05 1.64 6.83 -2.39 -0.02 1.63 16 31 H 0.07 1.98 6.67 -2.39 -0.02 1.96 16 32 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.37 20.26 7.80 -92.71 -0.72 19.53 16 36 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 2.53 3.51 -21.93 -0.08 2.46 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 42 H 0.22 -0.10 8.06 -2.91 -0.02 -0.12 16 43 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -72.25 355.04 1.03 -71.22 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.56 Total: 30.00 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.62 Total: -7.13 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -4.92 Total: -125.88 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.08 Total: 3.33 kcal Total: -72.25 1.03 -71.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.955 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds