Wall clock time and date at job start Tue Mar 31 2020 18:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70806 * 2 1 4 4 C 1.53165 * 109.58818 * 239.63730 * 2 1 3 5 5 C 1.53036 * 109.33071 * 185.57258 * 4 2 1 6 6 H 1.08996 * 109.46405 * 181.38834 * 5 4 2 7 7 N 1.46503 * 109.46076 * 301.35708 * 5 4 2 8 8 C 1.36932 * 120.00382 * 205.02650 * 7 5 4 9 9 H 1.07999 * 119.99915 * 359.97438 * 8 7 5 10 10 C 1.38808 * 120.00108 * 180.02562 * 8 7 5 11 11 N 1.31623 * 120.00111 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00111 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47280 * 90.00312 * 12 10 8 14 14 H 1.48495 * 109.47324 * 330.00767 * 12 10 8 15 15 H 1.48497 * 109.47510 * 210.00113 * 12 10 8 16 16 C 1.53039 * 109.52570 * 61.37039 * 5 4 2 17 17 C 1.53184 * 109.31597 * 298.64184 * 16 5 4 18 18 N 1.46925 * 108.77291 * 54.63509 * 17 16 5 19 19 C 1.34778 * 120.63207 * 126.40989 * 18 17 16 20 20 O 1.21733 * 120.00093 * 175.38582 * 19 18 17 21 21 C 1.46412 * 119.99896 * 355.39509 * 19 18 17 22 22 C 1.35781 * 124.95983 * 222.67160 * 21 19 18 23 23 C 1.38867 * 115.18474 * 180.02562 * 22 21 19 24 24 N 1.39745 * 139.91467 * 180.02562 * 23 22 21 25 25 H 0.97004 * 125.62861 * 359.97438 * 24 23 22 26 26 C 1.36213 * 108.73670 * 179.97438 * 24 23 22 27 27 C 1.34507 * 109.29741 * 0.02562 * 26 24 23 28 28 C 1.38245 * 113.39392 * 359.97438 * 23 22 21 29 29 S 1.75621 * 124.95841 * 42.36950 * 21 19 18 30 30 H 1.09000 * 109.46801 * 305.71745 * 1 2 3 31 31 H 1.08997 * 109.47164 * 65.71135 * 1 2 3 32 32 H 1.08994 * 109.47171 * 185.71531 * 1 2 3 33 33 H 1.09004 * 109.48072 * 65.62070 * 4 2 1 34 34 H 1.09006 * 109.50137 * 305.53821 * 4 2 1 35 35 H 0.97009 * 119.99525 * 25.02867 * 7 5 4 36 36 H 0.97007 * 119.99943 * 180.02562 * 11 10 8 37 37 H 1.08998 * 109.49617 * 58.60054 * 16 5 4 38 38 H 1.09004 * 109.49340 * 178.69087 * 16 5 4 39 39 H 1.08994 * 109.59092 * 174.42013 * 17 16 5 40 40 H 1.08997 * 109.58808 * 294.71140 * 17 16 5 41 41 H 1.07997 * 122.40615 * 0.02562 * 22 21 19 42 42 H 1.08004 * 125.34943 * 179.97438 * 26 24 23 43 43 H 1.07994 * 126.07655 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2451 5 6 3.5674 -0.8481 -1.1702 6 1 3.9375 -1.3450 -2.0670 7 7 4.1570 0.4897 -1.0751 8 6 5.4411 0.7038 -1.4999 9 1 6.0193 -0.1136 -1.9048 10 6 5.9999 1.9712 -1.4093 11 7 7.2339 2.1771 -1.8181 12 14 5.0001 3.3848 -0.7084 13 1 5.2091 3.4588 0.7600 14 1 3.5598 3.1612 -0.9925 15 1 5.4364 4.6584 -1.3351 16 6 3.9568 -1.6658 0.0634 17 6 3.4651 -0.9471 1.3236 18 7 2.0226 -0.6996 1.1944 19 6 1.1675 -1.1063 2.1535 20 8 -0.0137 -0.8221 2.0762 21 6 1.6592 -1.8896 3.2885 22 6 1.0346 -2.9748 3.8138 23 6 1.6816 -3.5649 4.8915 24 7 1.5254 -4.6344 5.7774 25 1 0.7867 -5.2632 5.7794 26 6 2.5815 -4.6480 6.6375 27 6 3.4096 -3.6305 6.3406 28 6 2.8607 -2.9316 5.2377 29 16 3.1469 -1.5675 4.1644 30 1 -0.3633 0.6000 0.8344 31 1 -0.3633 0.4227 -0.9367 32 1 -0.3633 -1.0225 0.1023 33 1 1.7657 -0.1668 -2.1364 34 1 1.6028 -1.7253 -1.2910 35 1 3.6378 1.2238 -0.7111 36 1 7.6246 3.0628 -1.7544 37 1 3.4982 -2.6529 0.0051 38 1 5.0411 -1.7697 0.1035 39 1 3.6518 -1.5719 2.1970 40 1 3.9921 0.0007 1.4329 41 1 0.1016 -3.3517 3.4217 42 1 2.7301 -5.3629 7.4333 43 1 4.3298 -3.3896 6.8520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044841501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:06 Heat of formation + Delta-G solvation = 75.571485 kcal Electronic energy + Delta-G solvation = -26754.862092 eV Core-core repulsion = 23121.749733 eV Total energy + Delta-G solvation = -3633.112359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34166 -40.38334 -37.64204 -35.28880 -34.33562 -32.69197 -31.94681 -31.08311 -29.71631 -28.34263 -27.06506 -24.65150 -23.91581 -23.10377 -22.21819 -21.41267 -20.76366 -19.52478 -18.60653 -18.09401 -17.75127 -16.69109 -15.97909 -15.57712 -15.43170 -14.83559 -14.58516 -14.47709 -14.24126 -14.19462 -13.73777 -13.60934 -13.33954 -13.12263 -12.76991 -12.50595 -12.28875 -12.18166 -12.08012 -11.94299 -11.48630 -11.30304 -11.09637 -10.93841 -10.84123 -10.76770 -10.42676 -10.24394 -10.05159 -9.78490 -9.58975 -9.09134 -8.96544 -8.36561 -8.16395 -7.70780 -7.29282 -5.78734 -3.14463 0.53266 1.30945 1.88174 2.31348 2.49587 2.70657 3.06619 3.26052 3.35794 3.38741 3.44892 4.49040 4.57175 4.70096 4.79726 5.01248 5.13259 5.14173 5.24815 5.28331 5.34528 5.52773 5.55897 5.58381 5.63825 5.73744 5.77451 5.83353 5.88746 5.99950 6.04112 6.15508 6.31721 6.32787 6.40141 6.46978 6.55626 6.61772 6.64834 6.70605 6.93764 7.18523 7.55361 7.97438 8.23409 8.40287 9.18271 9.91004 10.10595 11.39547 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.003739 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.474648 B = 7486.522932 C = 8360.295150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.145 3.855 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.061 0.939 7 N -0.747 5.747 8 C -0.242 4.242 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.877 3.123 13 H -0.283 1.283 14 H -0.278 1.278 15 H -0.290 1.290 16 C -0.145 4.145 17 C 0.097 3.903 18 N -0.591 5.591 19 C 0.588 3.412 20 O -0.530 6.530 21 C -0.228 4.228 22 C -0.046 4.046 23 C 0.027 3.973 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.052 3.948 27 C -0.170 4.170 28 C -0.206 4.206 29 S 0.193 5.807 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.143 0.857 42 H 0.176 0.824 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -14.654 15.177 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.708 3.292 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.217 1.217 16 C -0.186 4.186 17 C -0.027 4.027 18 N -0.323 5.323 19 C 0.375 3.625 20 O -0.410 6.410 21 C -0.348 4.348 22 C -0.082 4.082 23 C -0.087 4.087 24 N -0.161 5.161 25 H 0.255 0.745 26 C -0.082 4.082 27 C -0.199 4.199 28 C -0.327 4.327 29 S 0.458 5.542 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.160 0.840 42 H 0.193 0.807 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.464 -13.496 14.870 23.123 hybrid contribution -1.790 -0.331 0.740 1.965 sum -13.254 -13.826 15.610 24.708 Atomic orbital electron populations 1.22212 0.92858 1.03399 1.00910 1.21293 0.95220 0.95580 0.83645 0.90790 1.22293 0.97459 1.00696 0.97096 1.20174 0.90119 0.87148 0.95633 0.92064 1.42881 1.14271 1.05205 1.76685 1.19066 0.87972 0.95956 1.34225 0.89092 1.24640 0.96031 0.97051 1.01168 1.69695 1.13467 1.22036 1.52848 0.86668 0.79884 0.83471 0.79217 1.20995 1.20376 1.21681 1.22456 1.02051 0.97999 0.96122 1.22230 0.78809 1.02191 0.99474 1.48100 1.07955 1.56388 1.19874 1.16949 0.85601 0.78983 0.80950 1.90869 1.16306 1.56737 1.77063 1.23867 1.01905 1.03956 1.05114 1.19040 1.00250 0.94908 0.94002 1.17967 0.98313 0.94263 0.98129 1.41882 1.22010 1.25458 1.26718 0.74495 1.21831 0.88494 1.01142 0.96697 1.20141 1.02480 0.97952 0.99321 1.23550 1.00759 1.03838 1.04587 1.84301 1.18760 1.28607 1.22569 0.90655 0.93680 0.91748 0.90436 0.91495 0.80627 0.93061 0.92810 0.90047 0.89805 0.89812 0.83952 0.80672 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.60 37.16 0.28 -1.77 16 2 C 0.14 2.34 3.20 -67.61 -0.22 2.12 16 3 H 0.07 1.30 6.64 -51.93 -0.34 0.96 16 4 C -0.14 -2.13 5.07 -26.63 -0.13 -2.26 16 5 C 0.18 3.24 3.10 -67.89 -0.21 3.03 16 6 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 7 N -0.75 -16.60 4.11 -53.39 -0.22 -16.82 16 8 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 9 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.65 13.97 55.49 0.78 -27.87 16 12 Si 0.88 21.73 27.73 -169.99 -4.71 17.01 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 C -0.15 -2.37 5.78 -26.62 -0.15 -2.53 16 17 C 0.10 1.54 5.60 -3.72 -0.02 1.52 16 18 N -0.59 -9.46 2.97 -166.87 -0.50 -9.96 16 19 C 0.59 9.44 7.35 -12.97 -0.10 9.35 16 20 O -0.53 -9.36 12.59 5.16 0.06 -9.30 16 21 C -0.23 -3.23 5.55 -37.17 -0.21 -3.44 16 22 C -0.05 -0.58 10.08 -40.23 -0.41 -0.98 16 23 C 0.03 0.31 7.67 -84.02 -0.64 -0.34 16 24 N -0.56 -4.42 6.21 -10.90 -0.07 -4.49 16 25 H 0.42 1.95 8.96 -40.82 -0.37 1.58 16 26 C 0.05 0.37 11.85 -16.92 -0.20 0.17 16 27 C -0.17 -1.63 10.85 -39.60 -0.43 -2.06 16 28 C -0.21 -2.51 7.31 -38.28 -0.28 -2.79 16 29 S 0.19 2.53 19.78 -107.50 -2.13 0.41 16 30 H 0.07 1.23 6.59 -51.93 -0.34 0.88 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.99 6.90 -51.93 -0.36 0.63 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.36 8.04 3.92 -40.82 -0.16 7.88 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.22 3.72 -25.99 -0.10 1.13 16 40 H 0.08 1.51 7.74 -51.93 -0.40 1.10 16 41 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -32.80 348.82 -9.96 -42.76 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.46 Total: 9.54 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.97 Total: -6.53 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.01 Total: -59.14 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.13 Total: 0.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.80 -9.96 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044841501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.327 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds